Gchil2793.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2793.t1
Unique Name	Gchil2793.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:520572..521900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926569.ANT_24830
PFAMs	CMAS
Max annot lvl	200795\|Chloroflexi
KEGG ko	ko:K00574
Evalue	8.99e-140
EggNOG OGs	COG2230@1\|root,COG2230@2\|Bacteria,2G8QA@200795\|Chloroflexi
EC	2.1.1.79
Description	Mycolic acid cyclopropane synthetase
COG category	H
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2793	Gchil2793	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 520572..521900 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2793.t1.start1	Gchil2793.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 520572..520574 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2793.t1.CDS1	Gchil2793.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 520572..521900 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2793.t1.exon1	Gchil2793.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 520572..521900 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2793.t1.stop1	Gchil2793.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 521898..521900 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2793.t1	Gchil2793.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 520572..521900 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:520572..521900+
coding sequence from alignment at tig00004406_pilon:520572..521900+

mRNA sequence

>Gchil2793.t1 ID=Gchil2793.t1|Name=Gchil2793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=443bp
MEMKPNTGSNQQVVLATKAPYVAQTLTFLSSIFANYPPKDFAFRLWDGSI
WKKADADTARFTVVLNHPAALRRMFLPPSDTRMARAYILGDFDIEGEATG
ALALGQHLWKTWGWRDLVSNAIQLIRLPSDAGPRDEHAAQLHGALHSQDR
DRSAIEFHYDVSNEFYNLWLDTRMVYSCGYFNNISDDIDTVQLNKIDMIC
RKLRLKPGDRLLDIGCGWGALVIHAVQKYGVQALGVTLSEKQVELARERV
QQAGISAHCKIELLDYRNIDESHPFDKIVSVGMVEHVGRTMLRTYFAKCH
RLLRAGGVFLNHGITLLHDRFKSEAQVKRGFFARYIFPDGDLQPLLFVLQ
HAAEAGWEIRDVESLREHYALTLQRWHARLVQHETEAVRLVGRQTYRLWT
LYLLGAGWGFSSGLHSIYQTLLYKAAPNDDTQLPLTRSDWYQ*

spliced messenger RNA

>Gchil2793.t1 ID=Gchil2793.t1|Name=Gchil2793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00004406_pilon:520572..521900+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATGAAACCCAACACGGGCAGCAACCAACAAGTGGTTCTCGCGAC
CAAAGCGCCATATGTAGCGCAAACGTTGACATTTCTGAGCTCCATCTTCG
CCAATTACCCGCCAAAAGACTTTGCGTTCCGTCTTTGGGACGGTTCCATA
TGGAAAAAGGCCGACGCCGATACCGCGCGCTTCACGGTAGTACTCAACCA
TCCCGCGGCGCTTCGACGTATGTTTCTGCCACCATCGGACACGCGCATGG
CGCGTGCCTACATCCTCGGCGACTTTGATATTGAAGGCGAGGCTACAGGC
GCACTTGCACTAGGACAGCATTTGTGGAAGACGTGGGGGTGGCGCGATTT
GGTGTCAAACGCCATCCAGCTCATCCGACTTCCATCCGACGCCGGCCCGC
GCGACGAGCATGCAGCGCAACTACACGGCGCGTTACACTCGCAAGATCGC
GATCGAAGCGCCATCGAGTTCCATTACGATGTGTCGAACGAGTTTTACAA
CTTGTGGCTCGACACTCGCATGGTATACTCGTGCGGTTACTTTAACAATA
TTTCTGACGACATTGACACCGTGCAGCTGAACAAGATAGACATGATTTGT
CGCAAACTGCGTCTCAAGCCGGGCGATCGACTGCTCGACATTGGGTGTGG
CTGGGGCGCGCTCGTCATCCATGCCGTGCAAAAGTACGGCGTACAGGCGC
TCGGTGTGACGCTCAGCGAAAAGCAAGTGGAGCTCGCGCGCGAACGCGTA
CAACAAGCAGGCATATCCGCGCACTGCAAGATCGAACTACTCGACTATCG
CAATATCGATGAATCTCACCCATTCGACAAAATTGTGAGCGTAGGCATGG
TAGAGCACGTAGGTCGCACCATGTTACGCACATACTTTGCCAAATGTCAC
CGTCTACTACGTGCCGGCGGTGTATTTCTCAACCATGGTATCACACTATT
ACACGATCGTTTCAAGAGCGAGGCACAGGTGAAACGCGGTTTCTTCGCGC
GTTACATTTTCCCAGACGGCGACTTACAGCCCTTGCTGTTCGTGCTGCAG
CACGCAGCGGAAGCGGGATGGGAAATTCGCGACGTAGAAAGTCTGCGCGA
GCACTACGCGCTCACGTTGCAGCGCTGGCACGCGCGATTGGTACAACACG
AGACGGAGGCGGTGCGTCTGGTGGGCAGACAAACGTACCGACTGTGGACG
CTGTACTTGCTAGGCGCCGGGTGGGGATTTTCGTCCGGGCTACACTCCAT
TTACCAGACGTTACTGTACAAGGCGGCGCCCAACGACGACACACAGCTAC
CGCTCACCAGGAGCGACTGGTACCAGTAG

protein sequence of Gchil2793.t1

>Gchil2793.t1 ID=Gchil2793.t1|Name=Gchil2793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=443bp
MEMKPNTGSNQQVVLATKAPYVAQTLTFLSSIFANYPPKDFAFRLWDGSI
WKKADADTARFTVVLNHPAALRRMFLPPSDTRMARAYILGDFDIEGEATG
ALALGQHLWKTWGWRDLVSNAIQLIRLPSDAGPRDEHAAQLHGALHSQDR
DRSAIEFHYDVSNEFYNLWLDTRMVYSCGYFNNISDDIDTVQLNKIDMIC
RKLRLKPGDRLLDIGCGWGALVIHAVQKYGVQALGVTLSEKQVELARERV
QQAGISAHCKIELLDYRNIDESHPFDKIVSVGMVEHVGRTMLRTYFAKCH
RLLRAGGVFLNHGITLLHDRFKSEAQVKRGFFARYIFPDGDLQPLLFVLQ
HAAEAGWEIRDVESLREHYALTLQRWHARLVQHETEAVRLVGRQTYRLWT
LYLLGAGWGFSSGLHSIYQTLLYKAAPNDDTQLPLTRSDWYQ*

mRNA from alignment at tig00004406_pilon:520572..521900+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2793.t1 ID=Gchil2793.t1|Name=Gchil2793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00004406_pilon:520572..521900+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATGAAACCCAACACGGGCAGCAACCAACAAGTGGTTCTCGCGAC
CAAAGCGCCATATGTAGCGCAAACGTTGACATTTCTGAGCTCCATCTTCG
CCAATTACCCGCCAAAAGACTTTGCGTTCCGTCTTTGGGACGGTTCCATA
TGGAAAAAGGCCGACGCCGATACCGCGCGCTTCACGGTAGTACTCAACCA
TCCCGCGGCGCTTCGACGTATGTTTCTGCCACCATCGGACACGCGCATGG
CGCGTGCCTACATCCTCGGCGACTTTGATATTGAAGGCGAGGCTACAGGC
GCACTTGCACTAGGACAGCATTTGTGGAAGACGTGGGGGTGGCGCGATTT
GGTGTCAAACGCCATCCAGCTCATCCGACTTCCATCCGACGCCGGCCCGC
GCGACGAGCATGCAGCGCAACTACACGGCGCGTTACACTCGCAAGATCGC
GATCGAAGCGCCATCGAGTTCCATTACGATGTGTCGAACGAGTTTTACAA
CTTGTGGCTCGACACTCGCATGGTATACTCGTGCGGTTACTTTAACAATA
TTTCTGACGACATTGACACCGTGCAGCTGAACAAGATAGACATGATTTGT
CGCAAACTGCGTCTCAAGCCGGGCGATCGACTGCTCGACATTGGGTGTGG
CTGGGGCGCGCTCGTCATCCATGCCGTGCAAAAGTACGGCGTACAGGCGC
TCGGTGTGACGCTCAGCGAAAAGCAAGTGGAGCTCGCGCGCGAACGCGTA
CAACAAGCAGGCATATCCGCGCACTGCAAGATCGAACTACTCGACTATCG
CAATATCGATGAATCTCACCCATTCGACAAAATTGTGAGCGTAGGCATGG
TAGAGCACGTAGGTCGCACCATGTTACGCACATACTTTGCCAAATGTCAC
CGTCTACTACGTGCCGGCGGTGTATTTCTCAACCATGGTATCACACTATT
ACACGATCGTTTCAAGAGCGAGGCACAGGTGAAACGCGGTTTCTTCGCGC
GTTACATTTTCCCAGACGGCGACTTACAGCCCTTGCTGTTCGTGCTGCAG
CACGCAGCGGAAGCGGGATGGGAAATTCGCGACGTAGAAAGTCTGCGCGA
GCACTACGCGCTCACGTTGCAGCGCTGGCACGCGCGATTGGTACAACACG
AGACGGAGGCGGTGCGTCTGGTGGGCAGACAAACGTACCGACTGTGGACG
CTGTACTTGCTAGGCGCCGGGTGGGGATTTTCGTCCGGGCTACACTCCAT
TTACCAGACGTTACTGTACAAGGCGGCGCCCAACGACGACACACAGCTAC
CGCTCACCAGGAGCGACTGGTACCAGTAG

Coding sequence (CDS) from alignment at tig00004406_pilon:520572..521900+

>Gchil2793.t1 ID=Gchil2793.t1|Name=Gchil2793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00004406_pilon:520572..521900+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATGAAACCCAACACGGGCAGCAACCAACAAGTGGTTCTCGCGAC
CAAAGCGCCATATGTAGCGCAAACGTTGACATTTCTGAGCTCCATCTTCG
CCAATTACCCGCCAAAAGACTTTGCGTTCCGTCTTTGGGACGGTTCCATA
TGGAAAAAGGCCGACGCCGATACCGCGCGCTTCACGGTAGTACTCAACCA
TCCCGCGGCGCTTCGACGTATGTTTCTGCCACCATCGGACACGCGCATGG
CGCGTGCCTACATCCTCGGCGACTTTGATATTGAAGGCGAGGCTACAGGC
GCACTTGCACTAGGACAGCATTTGTGGAAGACGTGGGGGTGGCGCGATTT
GGTGTCAAACGCCATCCAGCTCATCCGACTTCCATCCGACGCCGGCCCGC
GCGACGAGCATGCAGCGCAACTACACGGCGCGTTACACTCGCAAGATCGC
GATCGAAGCGCCATCGAGTTCCATTACGATGTGTCGAACGAGTTTTACAA
CTTGTGGCTCGACACTCGCATGGTATACTCGTGCGGTTACTTTAACAATA
TTTCTGACGACATTGACACCGTGCAGCTGAACAAGATAGACATGATTTGT
CGCAAACTGCGTCTCAAGCCGGGCGATCGACTGCTCGACATTGGGTGTGG
CTGGGGCGCGCTCGTCATCCATGCCGTGCAAAAGTACGGCGTACAGGCGC
TCGGTGTGACGCTCAGCGAAAAGCAAGTGGAGCTCGCGCGCGAACGCGTA
CAACAAGCAGGCATATCCGCGCACTGCAAGATCGAACTACTCGACTATCG
CAATATCGATGAATCTCACCCATTCGACAAAATTGTGAGCGTAGGCATGG
TAGAGCACGTAGGTCGCACCATGTTACGCACATACTTTGCCAAATGTCAC
CGTCTACTACGTGCCGGCGGTGTATTTCTCAACCATGGTATCACACTATT
ACACGATCGTTTCAAGAGCGAGGCACAGGTGAAACGCGGTTTCTTCGCGC
GTTACATTTTCCCAGACGGCGACTTACAGCCCTTGCTGTTCGTGCTGCAG
CACGCAGCGGAAGCGGGATGGGAAATTCGCGACGTAGAAAGTCTGCGCGA
GCACTACGCGCTCACGTTGCAGCGCTGGCACGCGCGATTGGTACAACACG
AGACGGAGGCGGTGCGTCTGGTGGGCAGACAAACGTACCGACTGTGGACG
CTGTACTTGCTAGGCGCCGGGTGGGGATTTTCGTCCGGGCTACACTCCAT
TTACCAGACGTTACTGTACAAGGCGGCGCCCAACGACGACACACAGCTAC
CGCTCACCAGGAGCGACTGGTACCAGTAG