Gchil2785.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2785.t1
Unique NameGchil2785.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length591
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:498859..500893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog85681.XP_006419664.1
Preferred nameDVR
PFAMsNAD_binding_10
Max annot lvl35493|Streptophyta
KEGG rclassRC01376
KEGG koko:K19073
KEGG ReactionR06272,R06896
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016491,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0051744,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue3.29e-120
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota,37N31@33090|Viridiplantae,3G9Z4@35493|Streptophyta
EC1.3.1.75
DescriptionDivinyl chlorophyllide a 8-vinyl-reductase
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2785Gchil2785Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 498859..500893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2785.t1Gchil2785.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 498859..500893 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2785.t1.start1Gchil2785.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 498859..498861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2785.t1.CDS1Gchil2785.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 498859..499529 +
Gchil2785.t1.CDS2Gchil2785.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 499792..500893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2785.t1.exon1Gchil2785.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 498859..499529 +
Gchil2785.t1.exon2Gchil2785.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 499792..500893 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2785.t1.intron1Gchil2785.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 499530..499791 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2785.t1.stop1Gchil2785.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 500891..500893 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2785.t1 ID=Gchil2785.t1|Name=Gchil2785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=591bp
MATPPPSTVYMRRAAEKALGVVAGGAVAWACLSAALAQVPVVRPEALLFD
EGAYIQKSNAQLFTTAMRNVRDKQGYTVRFAMVNSIPFVQTPDEFAAELA
QQWQLSDSDVLFVASPKLARAGVFVGDAAATRLTHDIAESVANETFALAA
GEERYGAAVLDVSNRLIAVLSGEDDPGPPVVKIDEVVQNYKTKAETSAAR
NKYIAVVVVVLVISFVAPLLQTYWPAAAAPIRVARAPIAPRRRRTPTMDA
AAHGIYAPHATPSDIRVVIFGATGYIGRYVAREFITQGYRVVAFARRRSG
VRGRNGVDDVRNDLRGAHVVFGDVTQPQDVARAFQLAPDQVEPLSTVVVS
CLASRTGGIADSNNIDYQATLNTLQQARSAGASHFILLSAVCVQKPLLEF
QRAKLKFEEELQQLAEHDDAFSFCIVRPTAFFKSLAGQIERVKKGAAFIM
FEDGNLAKCNAISEADLARFMVLCASDSSKRNQILPVGGPGEAVTPRQQA
EVIFKLLDKKPKYQTLPIGLMDGAISVLAFLAKLLPFMSDAAEFGRIGKY
YAVEDMVAPSYGSDTLEQFFERAVRDDGLVGQELGDAAIF*
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spliced messenger RNA

>Gchil2785.t1 ID=Gchil2785.t1|Name=Gchil2785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00004406_pilon:498859..500893+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACGCCGCCGCCATCGACAGTGTACATGCGACGCGCCGCGGAAAA
GGCGCTGGGCGTCGTGGCCGGCGGCGCCGTCGCGTGGGCGTGCTTGAGTG
CGGCGCTGGCCCAAGTGCCCGTCGTTCGTCCCGAAGCGCTGCTCTTCGAC
GAGGGCGCCTACATTCAGAAGAGTAACGCGCAACTGTTCACCACTGCCAT
GCGCAACGTGCGCGACAAACAAGGTTACACTGTGCGCTTCGCCATGGTTA
ATAGCATTCCCTTCGTGCAGACGCCCGATGAGTTTGCCGCAGAGCTCGCG
CAGCAGTGGCAGCTGTCGGATTCCGATGTGCTCTTCGTGGCCAGTCCCAA
ACTGGCGCGCGCCGGCGTGTTTGTTGGCGATGCTGCCGCAACCCGTCTCA
CCCATGATATTGCCGAGAGCGTGGCCAACGAGACGTTTGCGCTGGCCGCA
GGCGAAGAGCGCTACGGCGCCGCCGTGCTGGACGTGAGCAACCGCCTTAT
CGCCGTGCTCAGCGGCGAGGACGACCCTGGACCGCCCGTCGTCAAGATCG
ACGAAGTGGTGCAGAACTACAAGACAAAGGCCGAGACGTCCGCCGCCCGT
AACAAGTACATTGCCGTCGTGGTCGTCGTGCTGGTCATTAGCTTTGTGGC
CCCGCTGTTGCAGACTTATTGGCCCGCCGCTGCCGCCCCCATCCGCGTTG
CGCGCGCCCCAATCGCGCCGCGCCGTCGCCGCACGCCCACCATGGATGCC
GCCGCACACGGCATCTACGCACCACACGCCACCCCTTCCGACATACGCGT
CGTCATCTTCGGTGCAACAGGTTACATCGGTCGCTATGTTGCGCGCGAAT
TCATAACACAGGGATATCGCGTTGTGGCGTTTGCGCGTCGTCGCTCCGGT
GTTCGAGGTCGAAACGGTGTTGATGACGTACGCAATGATCTGCGTGGCGC
GCACGTCGTGTTTGGCGACGTTACGCAACCGCAAGACGTTGCTCGTGCCT
TTCAACTCGCTCCTGATCAAGTGGAACCGCTTTCTACCGTGGTTGTTTCC
TGTCTGGCATCTAGGACCGGTGGCATTGCAGACTCCAACAACATCGACTA
TCAAGCCACGTTAAACACGCTGCAACAGGCGCGAAGCGCGGGCGCCTCGC
ACTTCATTCTGCTCTCCGCAGTGTGCGTGCAGAAACCGCTGCTTGAGTTT
CAGCGCGCAAAGCTAAAATTCGAAGAGGAGCTGCAACAACTGGCCGAGCA
TGATGATGCGTTCAGCTTTTGTATCGTGCGTCCCACCGCGTTTTTCAAGT
CGCTGGCCGGACAGATTGAGCGCGTGAAGAAGGGCGCGGCGTTCATCATG
TTCGAAGACGGAAACCTGGCCAAGTGCAACGCCATTTCAGAAGCTGATTT
GGCTCGATTCATGGTACTGTGCGCCAGCGATAGCTCCAAACGTAACCAAA
TCTTGCCCGTGGGCGGCCCGGGCGAGGCTGTGACGCCCAGGCAGCAGGCT
GAGGTTATTTTCAAGCTGCTCGACAAGAAACCAAAGTACCAGACGTTGCC
AATTGGTCTGATGGACGGCGCCATTTCCGTGTTGGCCTTTTTGGCAAAGT
TGCTGCCTTTCATGAGCGATGCAGCTGAGTTTGGACGCATCGGCAAGTAC
TACGCCGTGGAGGACATGGTGGCGCCGTCGTACGGCTCAGACACTTTGGA
ACAGTTTTTTGAAAGAGCGGTGCGCGATGACGGACTGGTCGGGCAGGAAT
TGGGCGACGCGGCCATCTTCTAG
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protein sequence of Gchil2785.t1

>Gchil2785.t1 ID=Gchil2785.t1|Name=Gchil2785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=591bp
MATPPPSTVYMRRAAEKALGVVAGGAVAWACLSAALAQVPVVRPEALLFD
EGAYIQKSNAQLFTTAMRNVRDKQGYTVRFAMVNSIPFVQTPDEFAAELA
QQWQLSDSDVLFVASPKLARAGVFVGDAAATRLTHDIAESVANETFALAA
GEERYGAAVLDVSNRLIAVLSGEDDPGPPVVKIDEVVQNYKTKAETSAAR
NKYIAVVVVVLVISFVAPLLQTYWPAAAAPIRVARAPIAPRRRRTPTMDA
AAHGIYAPHATPSDIRVVIFGATGYIGRYVAREFITQGYRVVAFARRRSG
VRGRNGVDDVRNDLRGAHVVFGDVTQPQDVARAFQLAPDQVEPLSTVVVS
CLASRTGGIADSNNIDYQATLNTLQQARSAGASHFILLSAVCVQKPLLEF
QRAKLKFEEELQQLAEHDDAFSFCIVRPTAFFKSLAGQIERVKKGAAFIM
FEDGNLAKCNAISEADLARFMVLCASDSSKRNQILPVGGPGEAVTPRQQA
EVIFKLLDKKPKYQTLPIGLMDGAISVLAFLAKLLPFMSDAAEFGRIGKY
YAVEDMVAPSYGSDTLEQFFERAVRDDGLVGQELGDAAIF*
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mRNA from alignment at tig00004406_pilon:498859..500893+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2785.t1 ID=Gchil2785.t1|Name=Gchil2785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2035bp|location=Sequence derived from alignment at tig00004406_pilon:498859..500893+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACGCCGCCGCCATCGACAGTGTACATGCGACGCGCCGCGGAAAA
GGCGCTGGGCGTCGTGGCCGGCGGCGCCGTCGCGTGGGCGTGCTTGAGTG
CGGCGCTGGCCCAAGTGCCCGTCGTTCGTCCCGAAGCGCTGCTCTTCGAC
GAGGGCGCCTACATTCAGAAGAGTAACGCGCAACTGTTCACCACTGCCAT
GCGCAACGTGCGCGACAAACAAGGTTACACTGTGCGCTTCGCCATGGTTA
ATAGCATTCCCTTCGTGCAGACGCCCGATGAGTTTGCCGCAGAGCTCGCG
CAGCAGTGGCAGCTGTCGGATTCCGATGTGCTCTTCGTGGCCAGTCCCAA
ACTGGCGCGCGCCGGCGTGTTTGTTGGCGATGCTGCCGCAACCCGTCTCA
CCCATGATATTGCCGAGAGCGTGGCCAACGAGACGTTTGCGCTGGCCGCA
GGCGAAGAGCGCTACGGCGCCGCCGTGCTGGACGTGAGCAACCGCCTTAT
CGCCGTGCTCAGCGGCGAGGACGACCCTGGACCGCCCGTCGTCAAGATCG
ACGAAGTGGTGCAGAACTACAAGACAAAGGCCGAGACGTCCGCCGCCCGT
AACAAGTACATTGCCGTCGTGGTCGTCGTGCTGGTCATTAGCTTTGTGGC
CCCGCTGTTGCAGACTTATTGGTATGTCCGCGATGATTGAGTACCGTAGC
TTACATGTATTCCACCAGTTTTGCAAATTTGTGCACTTGTCATTGGTGCT
TGTCCACACTGTGAGCTCAACGTGGCCCGCTGTCATAACAACGTTCAATA
GTTATCTATCTATCTACCTCCCGTAACACACACCTCACGCATctcctcct
ccccctctccccttcccctgcctcccccccccgcgtcccatggccttcat
cgccccgctcccccgcgcccCCGCGCCCACCAGGCCCGCCGCTGCCGCCC
CCATCCGCGTTGCGCGCGCCCCAATCGCGCCGCGCCGTCGCCGCACGCCC
ACCATGGATGCCGCCGCACACGGCATCTACGCACCACACGCCACCCCTTC
CGACATACGCGTCGTCATCTTCGGTGCAACAGGTTACATCGGTCGCTATG
TTGCGCGCGAATTCATAACACAGGGATATCGCGTTGTGGCGTTTGCGCGT
CGTCGCTCCGGTGTTCGAGGTCGAAACGGTGTTGATGACGTACGCAATGA
TCTGCGTGGCGCGCACGTCGTGTTTGGCGACGTTACGCAACCGCAAGACG
TTGCTCGTGCCTTTCAACTCGCTCCTGATCAAGTGGAACCGCTTTCTACC
GTGGTTGTTTCCTGTCTGGCATCTAGGACCGGTGGCATTGCAGACTCCAA
CAACATCGACTATCAAGCCACGTTAAACACGCTGCAACAGGCGCGAAGCG
CGGGCGCCTCGCACTTCATTCTGCTCTCCGCAGTGTGCGTGCAGAAACCG
CTGCTTGAGTTTCAGCGCGCAAAGCTAAAATTCGAAGAGGAGCTGCAACA
ACTGGCCGAGCATGATGATGCGTTCAGCTTTTGTATCGTGCGTCCCACCG
CGTTTTTCAAGTCGCTGGCCGGACAGATTGAGCGCGTGAAGAAGGGCGCG
GCGTTCATCATGTTCGAAGACGGAAACCTGGCCAAGTGCAACGCCATTTC
AGAAGCTGATTTGGCTCGATTCATGGTACTGTGCGCCAGCGATAGCTCCA
AACGTAACCAAATCTTGCCCGTGGGCGGCCCGGGCGAGGCTGTGACGCCC
AGGCAGCAGGCTGAGGTTATTTTCAAGCTGCTCGACAAGAAACCAAAGTA
CCAGACGTTGCCAATTGGTCTGATGGACGGCGCCATTTCCGTGTTGGCCT
TTTTGGCAAAGTTGCTGCCTTTCATGAGCGATGCAGCTGAGTTTGGACGC
ATCGGCAAGTACTACGCCGTGGAGGACATGGTGGCGCCGTCGTACGGCTC
AGACACTTTGGAACAGTTTTTTGAAAGAGCGGTGCGCGATGACGGACTGG
TCGGGCAGGAATTGGGCGACGCGGCCATCTTCTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:498859..500893+

>Gchil2785.t1 ID=Gchil2785.t1|Name=Gchil2785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00004406_pilon:498859..500893+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACGCCGCCGCCATCGACAGTGTACATGCGACGCGCCGCGGAAAA
GGCGCTGGGCGTCGTGGCCGGCGGCGCCGTCGCGTGGGCGTGCTTGAGTG
CGGCGCTGGCCCAAGTGCCCGTCGTTCGTCCCGAAGCGCTGCTCTTCGAC
GAGGGCGCCTACATTCAGAAGAGTAACGCGCAACTGTTCACCACTGCCAT
GCGCAACGTGCGCGACAAACAAGGTTACACTGTGCGCTTCGCCATGGTTA
ATAGCATTCCCTTCGTGCAGACGCCCGATGAGTTTGCCGCAGAGCTCGCG
CAGCAGTGGCAGCTGTCGGATTCCGATGTGCTCTTCGTGGCCAGTCCCAA
ACTGGCGCGCGCCGGCGTGTTTGTTGGCGATGCTGCCGCAACCCGTCTCA
CCCATGATATTGCCGAGAGCGTGGCCAACGAGACGTTTGCGCTGGCCGCA
GGCGAAGAGCGCTACGGCGCCGCCGTGCTGGACGTGAGCAACCGCCTTAT
CGCCGTGCTCAGCGGCGAGGACGACCCTGGACCGCCCGTCGTCAAGATCG
ACGAAGTGGTGCAGAACTACAAGACAAAGGCCGAGACGTCCGCCGCCCGT
AACAAGTACATTGCCGTCGTGGTCGTCGTGCTGGTCATTAGCTTTGTGGC
CCCGCTGTTGCAGACTTATTGGCCCGCCGCTGCCGCCCCCATCCGCGTTG
CGCGCGCCCCAATCGCGCCGCGCCGTCGCCGCACGCCCACCATGGATGCC
GCCGCACACGGCATCTACGCACCACACGCCACCCCTTCCGACATACGCGT
CGTCATCTTCGGTGCAACAGGTTACATCGGTCGCTATGTTGCGCGCGAAT
TCATAACACAGGGATATCGCGTTGTGGCGTTTGCGCGTCGTCGCTCCGGT
GTTCGAGGTCGAAACGGTGTTGATGACGTACGCAATGATCTGCGTGGCGC
GCACGTCGTGTTTGGCGACGTTACGCAACCGCAAGACGTTGCTCGTGCCT
TTCAACTCGCTCCTGATCAAGTGGAACCGCTTTCTACCGTGGTTGTTTCC
TGTCTGGCATCTAGGACCGGTGGCATTGCAGACTCCAACAACATCGACTA
TCAAGCCACGTTAAACACGCTGCAACAGGCGCGAAGCGCGGGCGCCTCGC
ACTTCATTCTGCTCTCCGCAGTGTGCGTGCAGAAACCGCTGCTTGAGTTT
CAGCGCGCAAAGCTAAAATTCGAAGAGGAGCTGCAACAACTGGCCGAGCA
TGATGATGCGTTCAGCTTTTGTATCGTGCGTCCCACCGCGTTTTTCAAGT
CGCTGGCCGGACAGATTGAGCGCGTGAAGAAGGGCGCGGCGTTCATCATG
TTCGAAGACGGAAACCTGGCCAAGTGCAACGCCATTTCAGAAGCTGATTT
GGCTCGATTCATGGTACTGTGCGCCAGCGATAGCTCCAAACGTAACCAAA
TCTTGCCCGTGGGCGGCCCGGGCGAGGCTGTGACGCCCAGGCAGCAGGCT
GAGGTTATTTTCAAGCTGCTCGACAAGAAACCAAAGTACCAGACGTTGCC
AATTGGTCTGATGGACGGCGCCATTTCCGTGTTGGCCTTTTTGGCAAAGT
TGCTGCCTTTCATGAGCGATGCAGCTGAGTTTGGACGCATCGGCAAGTAC
TACGCCGTGGAGGACATGGTGGCGCCGTCGTACGGCTCAGACACTTTGGA
ACAGTTTTTTGAAAGAGCGGTGCGCGATGACGGACTGGTCGGGCAGGAAT
TGGGCGACGCGGCCATCTTCTAG
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