Gchil2783.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2783.t1
Unique Name	Gchil2783.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	315

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:497027..497971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264402.Cagra.2584s0003.1.p
PFAMs	BPL_LplA_LipB
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00039,RC00992,RC02867
KEGG ko	ko:K03801
KEGG Reaction	R07766,R07769
KEGG Pathway	ko00785,ko01100,map00785,map01100
GOs	GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564
Evalue	4.14e-69
EggNOG OGs	COG0321@1\|root,KOG0325@2759\|Eukaryota,37JW8@33090\|Viridiplantae,3GDD5@35493\|Streptophyta,3HQA7@3699\|Brassicales
EC	2.3.1.181
Description	Biotin/lipoate A/B protein ligase family
COG category	CH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2783	Gchil2783	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 497027..497971 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2783.t1.start1	Gchil2783.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 497027..497029 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2783.t1.CDS1	Gchil2783.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 497027..497971 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2783.t1.exon1	Gchil2783.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 497027..497971 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2783.t1.stop1	Gchil2783.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 497969..497971 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2783.t1	Gchil2783.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 497027..497971 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:497027..497971+
coding sequence from alignment at tig00004406_pilon:497027..497971+

mRNA sequence

>Gchil2783.t1 ID=Gchil2783.t1|Name=Gchil2783.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp
MASIAAYSCAPATVGAMLQRSRAYALSGVARRVWGARLCSRAPHDGVAGS
VDGGGSADGGKSIGTTVKPCRLFDLRGAPVAYGDAWELQHALADGMKRDA
RVADALVLLEHQPVYTLGTASSTDHVLFDAHERRRGDMGEPEGRGELDAP
PLLVRTERGGEVTYHGPGQLVAYPILNLTRHRKDLHWYLRALEGTVIDML
LRFYGIRASRKDGLSGVWVGDQKVCAVGLKVSKWITMHGLALNVCTDLQP
FQRIVPCGVTQHGVSSLHLLVRDGRSVSVQVARSHLLDSFERTFGPYRMI
RSTYNAAHTQRAKY*

spliced messenger RNA

>Gchil2783.t1 ID=Gchil2783.t1|Name=Gchil2783.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00004406_pilon:497027..497971+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGCATTGCGGCGTATAGTTGCGCGCCCGCCACGGTGGGTGCCAT
GTTACAACGCAGTCGCGCGTATGCGCTGAGCGGAGTCGCTCGCCGCGTGT
GGGGCGCGCGCTTGTGTTCGCGCGCGCCGCACGACGGCGTGGCCGGGAGT
GTTGACGGTGGCGGGAGTGCCGACGGCGGCAAGAGCATTGGCACCACCGT
GAAGCCGTGTCGACTGTTCGATTTGCGCGGCGCACCGGTGGCGTACGGCG
ACGCATGGGAGCTACAACACGCGCTTGCAGATGGTATGAAGCGCGATGCG
CGCGTGGCAGACGCGTTGGTGCTATTGGAACACCAGCCCGTGTACACTCT
GGGTACGGCAAGTAGTACCGACCACGTTCTGTTCGATGCGCACGAGCGCC
GTCGCGGAGACATGGGCGAACCGGAAGGGCGGGGAGAATTGGATGCGCCG
CCATTGTTGGTGCGCACTGAGCGCGGCGGCGAGGTGACGTACCACGGGCC
AGGACAGTTGGTGGCGTATCCCATCCTCAACTTGACGCGTCATCGCAAGG
ATTTGCATTGGTACTTGCGCGCGTTGGAGGGAACGGTGATTGATATGTTA
CTACGGTTCTACGGGATACGGGCGAGTAGGAAGGACGGACTGTCGGGCGT
GTGGGTGGGCGACCAAAAGGTGTGTGCAGTGGGACTCAAGGTGTCCAAAT
GGATCACTATGCATGGTTTGGCGCTGAACGTTTGTACGGATCTGCAACCG
TTCCAGCGCATTGTGCCTTGCGGCGTGACGCAGCACGGCGTGTCGTCGCT
TCATCTGTTGGTACGCGACGGGCGCAGTGTGTCGGTGCAAGTGGCACGCT
CGCACTTGTTAGACAGTTTTGAACGAACGTTCGGGCCGTATCGTATGATA
CGCAGCACGTACAACGCTGCGCACACACAACGTGCAAAGTACTAA

protein sequence of Gchil2783.t1

>Gchil2783.t1 ID=Gchil2783.t1|Name=Gchil2783.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=315bp
MASIAAYSCAPATVGAMLQRSRAYALSGVARRVWGARLCSRAPHDGVAGS
VDGGGSADGGKSIGTTVKPCRLFDLRGAPVAYGDAWELQHALADGMKRDA
RVADALVLLEHQPVYTLGTASSTDHVLFDAHERRRGDMGEPEGRGELDAP
PLLVRTERGGEVTYHGPGQLVAYPILNLTRHRKDLHWYLRALEGTVIDML
LRFYGIRASRKDGLSGVWVGDQKVCAVGLKVSKWITMHGLALNVCTDLQP
FQRIVPCGVTQHGVSSLHLLVRDGRSVSVQVARSHLLDSFERTFGPYRMI
RSTYNAAHTQRAKY*

mRNA from alignment at tig00004406_pilon:497027..497971+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2783.t1 ID=Gchil2783.t1|Name=Gchil2783.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00004406_pilon:497027..497971+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAGCATTGCGGCGTATAGTTGCGCGCCCGCCACGGTGGGTGCCAT
GTTACAACGCAGTCGCGCGTATGCGCTGAGCGGAGTCGCTCGCCGCGTGT
GGGGCGCGCGCTTGTGTTCGCGCGCGCCGCACGACGGCGTGGCCGGGAGT
GTTGACGGTGGCGGGAGTGCCGACGGCGGCAAGAGCATTGGCACCACCGT
GAAGCCGTGTCGACTGTTCGATTTGCGCGGCGCACCGGTGGCGTACGGCG
ACGCATGGGAGCTACAACACGCGCTTGCAGATGGTATGAAGCGCGATGCG
CGCGTGGCAGACGCGTTGGTGCTATTGGAACACCAGCCCGTGTACACTCT
GGGTACGGCAAGTAGTACCGACCACGTTCTGTTCGATGCGCACGAGCGCC
GTCGCGGAGACATGGGCGAACCGGAAGGGCGGGGAGAATTGGATGCGCCG
CCATTGTTGGTGCGCACTGAGCGCGGCGGCGAGGTGACGTACCACGGGCC
AGGACAGTTGGTGGCGTATCCCATCCTCAACTTGACGCGTCATCGCAAGG
ATTTGCATTGGTACTTGCGCGCGTTGGAGGGAACGGTGATTGATATGTTA
CTACGGTTCTACGGGATACGGGCGAGTAGGAAGGACGGACTGTCGGGCGT
GTGGGTGGGCGACCAAAAGGTGTGTGCAGTGGGACTCAAGGTGTCCAAAT
GGATCACTATGCATGGTTTGGCGCTGAACGTTTGTACGGATCTGCAACCG
TTCCAGCGCATTGTGCCTTGCGGCGTGACGCAGCACGGCGTGTCGTCGCT
TCATCTGTTGGTACGCGACGGGCGCAGTGTGTCGGTGCAAGTGGCACGCT
CGCACTTGTTAGACAGTTTTGAACGAACGTTCGGGCCGTATCGTATGATA
CGCAGCACGTACAACGCTGCGCACACACAACGTGCAAAGTACTAA

Coding sequence (CDS) from alignment at tig00004406_pilon:497027..497971+

>Gchil2783.t1 ID=Gchil2783.t1|Name=Gchil2783.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00004406_pilon:497027..497971+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAGCATTGCGGCGTATAGTTGCGCGCCCGCCACGGTGGGTGCCAT
GTTACAACGCAGTCGCGCGTATGCGCTGAGCGGAGTCGCTCGCCGCGTGT
GGGGCGCGCGCTTGTGTTCGCGCGCGCCGCACGACGGCGTGGCCGGGAGT
GTTGACGGTGGCGGGAGTGCCGACGGCGGCAAGAGCATTGGCACCACCGT
GAAGCCGTGTCGACTGTTCGATTTGCGCGGCGCACCGGTGGCGTACGGCG
ACGCATGGGAGCTACAACACGCGCTTGCAGATGGTATGAAGCGCGATGCG
CGCGTGGCAGACGCGTTGGTGCTATTGGAACACCAGCCCGTGTACACTCT
GGGTACGGCAAGTAGTACCGACCACGTTCTGTTCGATGCGCACGAGCGCC
GTCGCGGAGACATGGGCGAACCGGAAGGGCGGGGAGAATTGGATGCGCCG
CCATTGTTGGTGCGCACTGAGCGCGGCGGCGAGGTGACGTACCACGGGCC
AGGACAGTTGGTGGCGTATCCCATCCTCAACTTGACGCGTCATCGCAAGG
ATTTGCATTGGTACTTGCGCGCGTTGGAGGGAACGGTGATTGATATGTTA
CTACGGTTCTACGGGATACGGGCGAGTAGGAAGGACGGACTGTCGGGCGT
GTGGGTGGGCGACCAAAAGGTGTGTGCAGTGGGACTCAAGGTGTCCAAAT
GGATCACTATGCATGGTTTGGCGCTGAACGTTTGTACGGATCTGCAACCG
TTCCAGCGCATTGTGCCTTGCGGCGTGACGCAGCACGGCGTGTCGTCGCT
TCATCTGTTGGTACGCGACGGGCGCAGTGTGTCGGTGCAAGTGGCACGCT
CGCACTTGTTAGACAGTTTTGAACGAACGTTCGGGCCGTATCGTATGATA
CGCAGCACGTACAACGCTGCGCACACACAACGTGCAAAGTACTAA