Gchil2782.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2782.t1
Unique NameGchil2782.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:496158..496931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4537.OPUNC03G37740.1
PFAMsRas
Max annot lvl35493|Streptophyta
KEGG koko:K07904
KEGG Pathwayko04144,ko04961,ko04962,ko04972,map04144,map04961,map04962,map04972
GOsGO:0000278,GO:0000281,GO:0000910,GO:0000911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0007049,GO:0008150,GO:0009504,GO:0009987,GO:0012505,GO:0016020,GO:0022402,GO:0031410,GO:0031982,GO:0032506,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071944,GO:0097708,GO:1902410,GO:1903047
Evalue4.8e-89
EggNOG OGsCOG1100@1|root,KOG0087@2759|Eukaryota,37J9I@33090|Viridiplantae,3G78Y@35493|Streptophyta,3KTS5@4447|Liliopsida,3IERK@38820|Poales
DescriptionRab subfamily of small GTPases
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2782Gchil2782Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 496158..496931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2782.t1Gchil2782.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 496158..496931 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2782.t1.start1Gchil2782.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 496158..496160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2782.t1.CDS1Gchil2782.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 496158..496197 +
Gchil2782.t1.CDS2Gchil2782.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 496324..496931 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2782.t1.exon1Gchil2782.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 496158..496197 +
Gchil2782.t1.exon2Gchil2782.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 496324..496931 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2782.t1.intron1Gchil2782.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 496198..496323 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2782.t1.stop1Gchil2782.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 496929..496931 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2782.t1 ID=Gchil2782.t1|Name=Gchil2782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=216bp
MARNEDEYDYLFKIVLIGDSGVGKSNLLLRFTRNEVDLNSKTTIGVEFAT
RSVPIQGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNTFE
SVARWLKELKDHADSKIVVMLVGNKCDLKNERQVSVEDGTEAAAKFGLSF
LETSALDATNVDESFKQVLEQIHNITTSNVVSGAIGERSPDPHGEPIKLE
ALPSRKTATKSSKCC*
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spliced messenger RNA

>Gchil2782.t1 ID=Gchil2782.t1|Name=Gchil2782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00004406_pilon:496158..496931+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTAACGAGGACGAATATGACTACCTGTTCAAGATCGTGTTGAT
TGGCGACAGCGGCGTTGGAAAGAGTAACCTGCTGCTGCGATTCACCAGAA
ACGAGGTGGATTTGAACTCCAAAACCACCATTGGCGTGGAGTTTGCCACG
CGCTCCGTGCCCATTCAGGGCAAGATCATCAAGGCGCAAATATGGGACAC
AGCTGGGCAGGAACGTTACCGCGCCATCACGTCGGCGTACTATAGAGGTG
CGGTGGGTGCGCTGCTGGTGTACGACATTACCAAGAAAAACACGTTTGAG
AGCGTGGCGCGCTGGCTCAAAGAGCTCAAGGACCACGCGGACTCCAAGAT
CGTCGTCATGCTGGTGGGCAACAAGTGCGACCTGAAAAACGAGCGCCAGG
TGAGCGTGGAGGACGGCACGGAGGCGGCGGCCAAGTTTGGGTTGAGTTTC
CTCGAAACTTCGGCATTGGACGCTACAAATGTGGACGAGAGTTTTAAACA
GGTGCTGGAACAGATTCACAACATTACTACATCCAACGTGGTGTCCGGCG
CCATTGGTGAACGATCGCCCGATCCGCACGGCGAACCCATTAAATTGGAG
GCACTACCATCGAGGAAGACTGCCACCAAAAGTAGCAAGTGTTGCTAG
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protein sequence of Gchil2782.t1

>Gchil2782.t1 ID=Gchil2782.t1|Name=Gchil2782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=216bp
MARNEDEYDYLFKIVLIGDSGVGKSNLLLRFTRNEVDLNSKTTIGVEFAT
RSVPIQGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNTFE
SVARWLKELKDHADSKIVVMLVGNKCDLKNERQVSVEDGTEAAAKFGLSF
LETSALDATNVDESFKQVLEQIHNITTSNVVSGAIGERSPDPHGEPIKLE
ALPSRKTATKSSKCC*
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mRNA from alignment at tig00004406_pilon:496158..496931+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2782.t1 ID=Gchil2782.t1|Name=Gchil2782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004406_pilon:496158..496931+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTAACGAGGACGAATATGACTACCTGTTCAAGAGTAAGCCTTT
GAGCGTTTGATGTTGCGTGGGCGCCTTCGCGCCCCCCGAGCTGTGTGTGA
TGCTCTTTCCGTTGCTGACTCGGTGCTTGTGTGCTATTTTTCTTTCTCTT
TTGTGTGTGTGCGTAGTCGTGTTGATTGGCGACAGCGGCGTTGGAAAGAG
TAACCTGCTGCTGCGATTCACCAGAAACGAGGTGGATTTGAACTCCAAAA
CCACCATTGGCGTGGAGTTTGCCACGCGCTCCGTGCCCATTCAGGGCAAG
ATCATCAAGGCGCAAATATGGGACACAGCTGGGCAGGAACGTTACCGCGC
CATCACGTCGGCGTACTATAGAGGTGCGGTGGGTGCGCTGCTGGTGTACG
ACATTACCAAGAAAAACACGTTTGAGAGCGTGGCGCGCTGGCTCAAAGAG
CTCAAGGACCACGCGGACTCCAAGATCGTCGTCATGCTGGTGGGCAACAA
GTGCGACCTGAAAAACGAGCGCCAGGTGAGCGTGGAGGACGGCACGGAGG
CGGCGGCCAAGTTTGGGTTGAGTTTCCTCGAAACTTCGGCATTGGACGCT
ACAAATGTGGACGAGAGTTTTAAACAGGTGCTGGAACAGATTCACAACAT
TACTACATCCAACGTGGTGTCCGGCGCCATTGGTGAACGATCGCCCGATC
CGCACGGCGAACCCATTAAATTGGAGGCACTACCATCGAGGAAGACTGCC
ACCAAAAGTAGCAAGTGTTGCTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:496158..496931+

>Gchil2782.t1 ID=Gchil2782.t1|Name=Gchil2782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00004406_pilon:496158..496931+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTAACGAGGACGAATATGACTACCTGTTCAAGATCGTGTTGAT
TGGCGACAGCGGCGTTGGAAAGAGTAACCTGCTGCTGCGATTCACCAGAA
ACGAGGTGGATTTGAACTCCAAAACCACCATTGGCGTGGAGTTTGCCACG
CGCTCCGTGCCCATTCAGGGCAAGATCATCAAGGCGCAAATATGGGACAC
AGCTGGGCAGGAACGTTACCGCGCCATCACGTCGGCGTACTATAGAGGTG
CGGTGGGTGCGCTGCTGGTGTACGACATTACCAAGAAAAACACGTTTGAG
AGCGTGGCGCGCTGGCTCAAAGAGCTCAAGGACCACGCGGACTCCAAGAT
CGTCGTCATGCTGGTGGGCAACAAGTGCGACCTGAAAAACGAGCGCCAGG
TGAGCGTGGAGGACGGCACGGAGGCGGCGGCCAAGTTTGGGTTGAGTTTC
CTCGAAACTTCGGCATTGGACGCTACAAATGTGGACGAGAGTTTTAAACA
GGTGCTGGAACAGATTCACAACATTACTACATCCAACGTGGTGTCCGGCG
CCATTGGTGAACGATCGCCCGATCCGCACGGCGAACCCATTAAATTGGAG
GCACTACCATCGAGGAAGACTGCCACCAAAAGTAGCAAGTGTTGCTAG
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