Gchil2776.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2776.t1
Unique NameGchil2776.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length612
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:479143..481071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_01009T0
Preferred nameABCD4
PFAMsABC_membrane_2,ABC_tran
Max annot lvl33154|Opisthokonta
KEGG koko:K05678
KEGG TC3.A.1.203
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000166,GO:0000323,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0008144,GO:0008150,GO:0008152,GO:0009235,GO:0009987,GO:0010033,GO:0012505,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0022804,GO:0022857,GO:0030554,GO:0031090,GO:0031224,GO:0031903,GO:0031984,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033013,GO:0034097,GO:0035639,GO:0036094,GO:0042175,GO:0042221,GO:0042579,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046483,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0098852,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351,GO:1990823,GO:1990830
Evalue9.33e-97
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota,38G49@33154|Opisthokonta
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryI
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2776Gchil2776Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 479143..481071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2776.t1Gchil2776.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 479143..481071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2776.t1.stop1Gchil2776.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 479143..479145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2776.t1.CDS1Gchil2776.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 479143..480891 -
Gchil2776.t1.CDS2Gchil2776.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 480985..481071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2776.t1.exon1Gchil2776.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 479143..480891 -
Gchil2776.t1.exon2Gchil2776.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 480985..481071 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2776.t1.intron1Gchil2776.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 480892..480984 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2776.t1.start1Gchil2776.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 481069..481071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2776.t1 ID=Gchil2776.t1|Name=Gchil2776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=612bp
MILPPDRNAVLNRESVRKLFHILRVASLPIFPDMVVMLCLPLMILAYMVG
GYFVILAPGKLYNTLVSEDWPLFRSEMTKYALIATAVLLVKVLRGVLRES
SANYLRLRITDAIHSLYFANRTHANKYGPPAYYKLIAEDVIDNPDQRIVA
DARDFSVSLLDILAGGRSQGQDTGGCLEAVASLLLYSNKTLIRTGWFGII
VAYLWSALVSLGTVYAINCTSPVVFRQEKLEADFRYRHAEFRRHFEEIAM
LRGGPLERERLSSNLDMAVSNTWTVISRHVFLNFVQYGFGYYVSLIMYLA
LALAIYSNVFDSSSVAFSSDMTPGEKAQWISQTGSIFMQLLYSFTMLVQL
GTVASEFISHVNRLAALVSVLEEEPMPQLSTVESPDTEPLMSRTSHDSNH
SPSSTTDSIQVEELVVQPGGSTIVGPISFTLEKGRWVLLDGRTGTGKTSI
VKVLRGIWTPSSGMIRMPQDQTSVIFVPQTPYITSGFCSLRELVTYPKRC
CGSIEETNRVSTALEEVGWCRGLHGECLDLKTDWSCQISPGEAQLIAASR
VLFHRPSFVILDEPTASLDVVSEARVMTALKRGGISSLTVAHSPSLRQLH
DQIVTLGVSGL*
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spliced messenger RNA

>Gchil2776.t1 ID=Gchil2776.t1|Name=Gchil2776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00004406_pilon:479143..481071- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTTCCTCCTGACAGAAATGCTGTCCTAAATCGCGAATCCGTGCG
AAAACTCTTTCACATTCTGAGGGTTGCTTCGCTTCCGATCTTCCCGGACA
TGGTTGTCATGCTTTGCTTGCCTCTCATGATACTTGCGTACATGGTGGGG
GGTTACTTCGTCATTTTGGCTCCGGGAAAGCTTTATAATACTCTAGTCAG
CGAAGACTGGCCCCTGTTTAGGAGCGAAATGACCAAGTACGCATTGATTG
CAACTGCTGTTTTGCTTGTGAAAGTTCTTCGAGGGGTACTGCGAGAGTCA
TCTGCGAACTACTTACGTCTCAGAATCACGGACGCCATTCATTCTCTCTA
CTTTGCCAATCGCACGCACGCGAACAAATACGGCCCCCCTGCCTACTACA
AACTCATCGCAGAAGATGTAATAGACAATCCAGATCAACGAATAGTTGCA
GATGCTCGGGACTTTTCAGTTTCTTTGCTCGACATTTTAGCCGGAGGGCG
ATCTCAAGGTCAGGATACAGGAGGCTGCCTTGAAGCTGTTGCCTCTTTAC
TCTTATACTCGAACAAAACTCTTATTCGCACCGGTTGGTTTGGAATCATA
GTGGCGTACTTATGGTCAGCGCTTGTGTCGCTTGGGACGGTCTATGCCAT
AAATTGTACATCACCTGTTGTCTTTCGTCAGGAAAAGCTCGAAGCTGATT
TCCGTTATCGTCATGCAGAATTTCGCCGACATTTCGAAGAGATCGCAATG
TTGAGAGGAGGGCCGTTAGAGAGAGAGAGGCTCTCAAGCAACTTGGACAT
GGCCGTGTCTAATACGTGGACTGTCATTTCTCGGCATGTTTTCTTGAACT
TCGTTCAGTATGGCTTTGGCTACTACGTTTCGCTAATCATGTACCTTGCC
TTGGCCCTAGCCATTTATTCAAATGTATTCGACTCTTCAAGTGTCGCCTT
CTCGTCAGACATGACGCCAGGCGAAAAGGCACAATGGATTTCTCAAACGG
GGAGTATCTTCATGCAACTATTGTATTCATTCACCATGCTCGTTCAACTC
GGAACAGTTGCAAGTGAATTTATTTCACACGTAAATAGATTAGCAGCCCT
GGTTTCTGTTCTTGAAGAAGAGCCTATGCCGCAGCTAAGCACAGTAGAAA
GTCCTGATACTGAGCCTCTCATGTCAAGAACGTCTCACGATTCGAACCAC
TCGCCTTCGAGCACAACAGATTCCATCCAAGTTGAAGAGCTTGTGGTACA
ACCGGGAGGCTCCACAATCGTTGGGCCCATTTCGTTCACACTCGAAAAGG
GTCGCTGGGTTTTGCTAGATGGAAGAACTGGAACTGGTAAGACAAGCATA
GTCAAAGTTCTTCGTGGGATATGGACTCCTTCATCTGGAATGATTCGAAT
GCCGCAGGATCAGACTTCAGTCATTTTTGTGCCACAAACTCCTTACATAA
CGTCAGGTTTTTGTTCTCTGCGGGAACTTGTAACATACCCAAAACGGTGT
TGTGGATCAATAGAAGAAACAAACAGAGTATCCACAGCATTAGAGGAGGT
TGGTTGGTGCAGAGGTTTACATGGAGAATGTTTAGATCTCAAGACGGACT
GGTCATGTCAAATTAGTCCGGGTGAGGCGCAACTGATTGCAGCTTCACGG
GTCTTGTTCCACAGACCCAGTTTTGTTATTTTGGACGAACCTACAGCCTC
GCTGGACGTTGTGAGTGAAGCAAGAGTAATGACAGCTCTGAAGAGAGGCG
GAATATCATCTCTAACAGTCGCACACTCCCCATCACTAAGACAGCTTCAC
GATCAAATCGTAACCCTTGGCGTCAGTGGCTTGTAG
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protein sequence of Gchil2776.t1

>Gchil2776.t1 ID=Gchil2776.t1|Name=Gchil2776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=612bp
MILPPDRNAVLNRESVRKLFHILRVASLPIFPDMVVMLCLPLMILAYMVG
GYFVILAPGKLYNTLVSEDWPLFRSEMTKYALIATAVLLVKVLRGVLRES
SANYLRLRITDAIHSLYFANRTHANKYGPPAYYKLIAEDVIDNPDQRIVA
DARDFSVSLLDILAGGRSQGQDTGGCLEAVASLLLYSNKTLIRTGWFGII
VAYLWSALVSLGTVYAINCTSPVVFRQEKLEADFRYRHAEFRRHFEEIAM
LRGGPLERERLSSNLDMAVSNTWTVISRHVFLNFVQYGFGYYVSLIMYLA
LALAIYSNVFDSSSVAFSSDMTPGEKAQWISQTGSIFMQLLYSFTMLVQL
GTVASEFISHVNRLAALVSVLEEEPMPQLSTVESPDTEPLMSRTSHDSNH
SPSSTTDSIQVEELVVQPGGSTIVGPISFTLEKGRWVLLDGRTGTGKTSI
VKVLRGIWTPSSGMIRMPQDQTSVIFVPQTPYITSGFCSLRELVTYPKRC
CGSIEETNRVSTALEEVGWCRGLHGECLDLKTDWSCQISPGEAQLIAASR
VLFHRPSFVILDEPTASLDVVSEARVMTALKRGGISSLTVAHSPSLRQLH
DQIVTLGVSGL*
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mRNA from alignment at tig00004406_pilon:479143..481071-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2776.t1 ID=Gchil2776.t1|Name=Gchil2776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00004406_pilon:479143..481071- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCTTCCTCCTGACAGAAATGCTGTCCTAAATCGCGAATCCGTGCG
AAAACTCTTTCACATTCTGAGGGTTGCTTCGCTTCCGGTGAGTAGAAGGC
TTTCTCATCCGTCCCACTACGGTATCAATAAGACTTTCTGACCAGAAGTC
TAATTAATCCTGCATTCGCTTCGTTTGTAGATCTTCCCGGACATGGTTGT
CATGCTTTGCTTGCCTCTCATGATACTTGCGTACATGGTGGGGGGTTACT
TCGTCATTTTGGCTCCGGGAAAGCTTTATAATACTCTAGTCAGCGAAGAC
TGGCCCCTGTTTAGGAGCGAAATGACCAAGTACGCATTGATTGCAACTGC
TGTTTTGCTTGTGAAAGTTCTTCGAGGGGTACTGCGAGAGTCATCTGCGA
ACTACTTACGTCTCAGAATCACGGACGCCATTCATTCTCTCTACTTTGCC
AATCGCACGCACGCGAACAAATACGGCCCCCCTGCCTACTACAAACTCAT
CGCAGAAGATGTAATAGACAATCCAGATCAACGAATAGTTGCAGATGCTC
GGGACTTTTCAGTTTCTTTGCTCGACATTTTAGCCGGAGGGCGATCTCAA
GGTCAGGATACAGGAGGCTGCCTTGAAGCTGTTGCCTCTTTACTCTTATA
CTCGAACAAAACTCTTATTCGCACCGGTTGGTTTGGAATCATAGTGGCGT
ACTTATGGTCAGCGCTTGTGTCGCTTGGGACGGTCTATGCCATAAATTGT
ACATCACCTGTTGTCTTTCGTCAGGAAAAGCTCGAAGCTGATTTCCGTTA
TCGTCATGCAGAATTTCGCCGACATTTCGAAGAGATCGCAATGTTGAGAG
GAGGGCCGTTAGAGAGAGAGAGGCTCTCAAGCAACTTGGACATGGCCGTG
TCTAATACGTGGACTGTCATTTCTCGGCATGTTTTCTTGAACTTCGTTCA
GTATGGCTTTGGCTACTACGTTTCGCTAATCATGTACCTTGCCTTGGCCC
TAGCCATTTATTCAAATGTATTCGACTCTTCAAGTGTCGCCTTCTCGTCA
GACATGACGCCAGGCGAAAAGGCACAATGGATTTCTCAAACGGGGAGTAT
CTTCATGCAACTATTGTATTCATTCACCATGCTCGTTCAACTCGGAACAG
TTGCAAGTGAATTTATTTCACACGTAAATAGATTAGCAGCCCTGGTTTCT
GTTCTTGAAGAAGAGCCTATGCCGCAGCTAAGCACAGTAGAAAGTCCTGA
TACTGAGCCTCTCATGTCAAGAACGTCTCACGATTCGAACCACTCGCCTT
CGAGCACAACAGATTCCATCCAAGTTGAAGAGCTTGTGGTACAACCGGGA
GGCTCCACAATCGTTGGGCCCATTTCGTTCACACTCGAAAAGGGTCGCTG
GGTTTTGCTAGATGGAAGAACTGGAACTGGTAAGACAAGCATAGTCAAAG
TTCTTCGTGGGATATGGACTCCTTCATCTGGAATGATTCGAATGCCGCAG
GATCAGACTTCAGTCATTTTTGTGCCACAAACTCCTTACATAACGTCAGG
TTTTTGTTCTCTGCGGGAACTTGTAACATACCCAAAACGGTGTTGTGGAT
CAATAGAAGAAACAAACAGAGTATCCACAGCATTAGAGGAGGTTGGTTGG
TGCAGAGGTTTACATGGAGAATGTTTAGATCTCAAGACGGACTGGTCATG
TCAAATTAGTCCGGGTGAGGCGCAACTGATTGCAGCTTCACGGGTCTTGT
TCCACAGACCCAGTTTTGTTATTTTGGACGAACCTACAGCCTCGCTGGAC
GTTGTGAGTGAAGCAAGAGTAATGACAGCTCTGAAGAGAGGCGGAATATC
ATCTCTAACAGTCGCACACTCCCCATCACTAAGACAGCTTCACGATCAAA
TCGTAACCCTTGGCGTCAGTGGCTTGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:479143..481071-

>Gchil2776.t1 ID=Gchil2776.t1|Name=Gchil2776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1836bp|location=Sequence derived from alignment at tig00004406_pilon:479143..481071- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCTTCCTCCTGACAGAAATGCTGTCCTAAATCGCGAATCCGTGCG
AAAACTCTTTCACATTCTGAGGGTTGCTTCGCTTCCGATCTTCCCGGACA
TGGTTGTCATGCTTTGCTTGCCTCTCATGATACTTGCGTACATGGTGGGG
GGTTACTTCGTCATTTTGGCTCCGGGAAAGCTTTATAATACTCTAGTCAG
CGAAGACTGGCCCCTGTTTAGGAGCGAAATGACCAAGTACGCATTGATTG
CAACTGCTGTTTTGCTTGTGAAAGTTCTTCGAGGGGTACTGCGAGAGTCA
TCTGCGAACTACTTACGTCTCAGAATCACGGACGCCATTCATTCTCTCTA
CTTTGCCAATCGCACGCACGCGAACAAATACGGCCCCCCTGCCTACTACA
AACTCATCGCAGAAGATGTAATAGACAATCCAGATCAACGAATAGTTGCA
GATGCTCGGGACTTTTCAGTTTCTTTGCTCGACATTTTAGCCGGAGGGCG
ATCTCAAGGTCAGGATACAGGAGGCTGCCTTGAAGCTGTTGCCTCTTTAC
TCTTATACTCGAACAAAACTCTTATTCGCACCGGTTGGTTTGGAATCATA
GTGGCGTACTTATGGTCAGCGCTTGTGTCGCTTGGGACGGTCTATGCCAT
AAATTGTACATCACCTGTTGTCTTTCGTCAGGAAAAGCTCGAAGCTGATT
TCCGTTATCGTCATGCAGAATTTCGCCGACATTTCGAAGAGATCGCAATG
TTGAGAGGAGGGCCGTTAGAGAGAGAGAGGCTCTCAAGCAACTTGGACAT
GGCCGTGTCTAATACGTGGACTGTCATTTCTCGGCATGTTTTCTTGAACT
TCGTTCAGTATGGCTTTGGCTACTACGTTTCGCTAATCATGTACCTTGCC
TTGGCCCTAGCCATTTATTCAAATGTATTCGACTCTTCAAGTGTCGCCTT
CTCGTCAGACATGACGCCAGGCGAAAAGGCACAATGGATTTCTCAAACGG
GGAGTATCTTCATGCAACTATTGTATTCATTCACCATGCTCGTTCAACTC
GGAACAGTTGCAAGTGAATTTATTTCACACGTAAATAGATTAGCAGCCCT
GGTTTCTGTTCTTGAAGAAGAGCCTATGCCGCAGCTAAGCACAGTAGAAA
GTCCTGATACTGAGCCTCTCATGTCAAGAACGTCTCACGATTCGAACCAC
TCGCCTTCGAGCACAACAGATTCCATCCAAGTTGAAGAGCTTGTGGTACA
ACCGGGAGGCTCCACAATCGTTGGGCCCATTTCGTTCACACTCGAAAAGG
GTCGCTGGGTTTTGCTAGATGGAAGAACTGGAACTGGTAAGACAAGCATA
GTCAAAGTTCTTCGTGGGATATGGACTCCTTCATCTGGAATGATTCGAAT
GCCGCAGGATCAGACTTCAGTCATTTTTGTGCCACAAACTCCTTACATAA
CGTCAGGTTTTTGTTCTCTGCGGGAACTTGTAACATACCCAAAACGGTGT
TGTGGATCAATAGAAGAAACAAACAGAGTATCCACAGCATTAGAGGAGGT
TGGTTGGTGCAGAGGTTTACATGGAGAATGTTTAGATCTCAAGACGGACT
GGTCATGTCAAATTAGTCCGGGTGAGGCGCAACTGATTGCAGCTTCACGG
GTCTTGTTCCACAGACCCAGTTTTGTTATTTTGGACGAACCTACAGCCTC
GCTGGACGTTGTGAGTGAAGCAAGAGTAATGACAGCTCTGAAGAGAGGCG
GAATATCATCTCTAACAGTCGCACACTCCCCATCACTAAGACAGCTTCAC
GATCAAATCGTAACCCTTGGCGTCAGTGGCTTGTAG
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