Gchil2775.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2775.t1
Unique NameGchil2775.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:476877..478938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705814.1
Preferred nameCHCHD4
PFAMsCHCH
Max annot lvl2759|Eukaryota
KEGG koko:K17782
KEGG TC3.A.8.1
GOsGO:0000002,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005777,GO:0006139,GO:0006259,GO:0006281,GO:0006457,GO:0006458,GO:0006464,GO:0006605,GO:0006625,GO:0006626,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007005,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0015031,GO:0015035,GO:0015036,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0017038,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019222,GO:0019538,GO:0019866,GO:0022417,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032042,GO:0032386,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034097,GO:0034599,GO:0034613,GO:0034641,GO:0036211,GO:0042221,GO:0042579,GO:0042721,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043457,GO:0043467,GO:0043504,GO:0043574,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046483,GO:0046822,GO:0046825,GO:0046907,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051084,GO:0051179,GO:0051223,GO:0051234,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0055114,GO:0060341,GO:0065002,GO:0065007,GO:0070013,GO:0070201,GO:0070585,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072662,GO:0072663,GO:0090087,GO:0090304,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901360,GO:1901564,GO:1901857,GO:1903827,GO:1990542,GO:1990823,GO:1990830
Evalue3.54e-28
EggNOG OGsKOG4149@1|root,KOG4149@2759|Eukaryota
Descriptionprotein transport
COG categoryS
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2775Gchil2775Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 476877..478938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2775.t1Gchil2775.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 476877..478938 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2775.t1.start1Gchil2775.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 476877..476879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2775.t1.CDS1Gchil2775.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 476877..477260 +
Gchil2775.t1.CDS2Gchil2775.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 477357..477548 +
Gchil2775.t1.CDS3Gchil2775.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 478312..478938 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2775.t1.exon1Gchil2775.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 476877..477260 +
Gchil2775.t1.exon2Gchil2775.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 477357..477548 +
Gchil2775.t1.exon3Gchil2775.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 478312..478938 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2775.t1.intron1Gchil2775.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 477261..477356 +
Gchil2775.t1.intron2Gchil2775.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 477549..478311 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2775.t1.stop1Gchil2775.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 478936..478938 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2775.t1 ID=Gchil2775.t1|Name=Gchil2775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=401bp
MAPSESLEIAHRELENANSGNKKDVIDHEKDEEEDQEEDDNKTRKDACRK
ADCKVLRDSLNCSTAGTYSKIGFVPLLSIKNMGYLFASVSSGISGLRPRF
FSMEGAGGRTGYTIFVGSPYGAPTTVFAIMQPTRVGPAPEGPLKFLLEQA
LISSPARDRVPLKSKLIRFGKFEDSACTFKEDTPFRALPAGLPDPVNSVT
MEPQPSSAPEFEQEPELFAASASEKKAIASGKTESDASDLSALSEEPHSA
TRKEHDDHQQAVGKKESEESTESKTVSNPETSKVEQEVASVELNASDPNS
ERPLSKEELIEEALNCPCISSMKEGSCGDSFIDAYKCFLQSETEPKGMDC
MDQFKTMQSCLAEHPEEYNLDDDEADDPFAMAKEKQEQDTPKVAAEPPSA
*
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spliced messenger RNA

>Gchil2775.t1 ID=Gchil2775.t1|Name=Gchil2775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004406_pilon:476877..478938+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCAAGCGAGAGCCTAGAAATTGCCCATCGCGAGTTGGAGAACGC
AAATAGTGGAAACAAGAAGGATGTCATCGACCACgaaaaagacgaagaag
aagatcaagaagaagatgaTAACAAAACTCGGAAGGATGCTTGCAGGAAA
GCTGATTGTAAGGTTTTGAGGGACTCGCTGAACTGCTCAACCGCAGGTAC
ATACTCCAAGATTGGATTTGTTCCACTTTTGAGCATCAAAAATATGGGTT
ACTTGTTTGCAAGCGTCTCATCCGGTATTAGTGGTTTGCGTCCCAGATTT
TTCTCCATGGAAGGAGCAGGGGGTCGGACAGGGTACACAATTTTTGTTGG
TTCGCCGTATGGAGCACCAACAACAGTATTTGCGATCATGCAACCCACAC
GAGTTGGCCCGGCACCTGAGGGTCCATTGAAATTCCTGCTCGAACAAGCG
CTCATTTCATCACCTGCCCGTGACCGAGTTCCTCTAAAGTCCAAACTCAT
CCGGTTCGGAAAATTCGAGGATTCGGCCTGTACGTTCAAAGAAGATACTC
CTTTCCGAGCACTGCCAGCAGGTTTGCCAGATCCTGTCAACAGCGTGACA
ATGGAACCTCAACCCTCTTCAGCTCCGGAATTCGAACAAGAGCCAGAATT
ATTCGCAGCTTCAGCATCTGAAAAAAAAGCCATCGCTTCAGGGAAAACTG
AGTCAGATGCATCTGATCTGTCAGCTCTGTCTGAGGAACCGCACAGCGCA
ACGCGAAAGGAGCACGACGACCACCAACAAGCGGTGGGAAAGAAAGAATC
AGAGGAATCCACAGAATCCAAAACCGTATCAAACCCAGAAACTTCTAAGG
TTGAACAAGAAGTAGCCAGCGTCGAATTGAATGCTTCAGATCCGAACAGC
GAGCGGCCCTTGAGTAAGGAGGAGCTCATTGAGGAGGCACTTAACTGCCC
TTGCATTTCTTCCATGAAAGAAGGATCCTGTGGAGATTCGTTTATCGATG
CATATAAATGCTTTTTGCAAAGCGAGACCGAGCCTAAAGGTATGGACTGC
ATGGATCAATTTAAAACCATGCAATCCTGTCTTGCAGAGCATCCTGAGGA
ATACAATCTAGATGATGACGAAGCCGATGATCCATTTGCAATGGCAAAGG
AAAAGCAGGAACAAGACACACCGAAAGTCGCAGCTGAACCACCATCTGCG
TGA
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protein sequence of Gchil2775.t1

>Gchil2775.t1 ID=Gchil2775.t1|Name=Gchil2775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=401bp
MAPSESLEIAHRELENANSGNKKDVIDHEKDEEEDQEEDDNKTRKDACRK
ADCKVLRDSLNCSTAGTYSKIGFVPLLSIKNMGYLFASVSSGISGLRPRF
FSMEGAGGRTGYTIFVGSPYGAPTTVFAIMQPTRVGPAPEGPLKFLLEQA
LISSPARDRVPLKSKLIRFGKFEDSACTFKEDTPFRALPAGLPDPVNSVT
MEPQPSSAPEFEQEPELFAASASEKKAIASGKTESDASDLSALSEEPHSA
TRKEHDDHQQAVGKKESEESTESKTVSNPETSKVEQEVASVELNASDPNS
ERPLSKEELIEEALNCPCISSMKEGSCGDSFIDAYKCFLQSETEPKGMDC
MDQFKTMQSCLAEHPEEYNLDDDEADDPFAMAKEKQEQDTPKVAAEPPSA
*
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mRNA from alignment at tig00004406_pilon:476877..478938+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2775.t1 ID=Gchil2775.t1|Name=Gchil2775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2062bp|location=Sequence derived from alignment at tig00004406_pilon:476877..478938+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCAAGCGAGAGCCTAGAAATTGCCCATCGCGAGTTGGAGAACGC
AAATAGTGGAAACAAGAAGGATGTCATCGACCACgaaaaagacgaagaag
aagatcaagaagaagatgaTAACAAAACTCGGAAGGATGCTTGCAGGAAA
GCTGATTGTAAGGTTTTGAGGGACTCGCTGAACTGCTCAACCGCAGGTAC
ATACTCCAAGATTGGATTTGTTCCACTTTTGAGCATCAAAAATATGGGTT
ACTTGTTTGCAAGCGTCTCATCCGGTATTAGTGGTTTGCGTCCCAGATTT
TTCTCCATGGAAGGAGCAGGGGGTCGGACAGGGTACACAATTTTTGTTGG
TTCGCCGTATGGAGCACCAACAACAGTATTTGCGGTACGATACTCTTACT
TTTGTGGAGACCTGTTTGATTTTTCTCACCTTGACAGTAACGACTGACCC
ATGCATTCTTTCTTTTCTCCCTTATTTTAGATCATGCAACCCACACGAGT
TGGCCCGGCACCTGAGGGTCCATTGAAATTCCTGCTCGAACAAGCGCTCA
TTTCATCACCTGCCCGTGACCGAGTTCCTCTAAAGTCCAAACTCATCCGG
TTCGGAAAATTCGAGGATTCGGCCTGTACGTTCAAAGAAGATACTCCTTT
CCGAGCACTGCCAGCAGGTTTGGTGCGAGAAGTTGAAAGGGATAGAATGT
TCTCTGCCAATGATTATTTCACTCTCGCTTTTCAAACTCAAACGAATATA
ACTTCCGTTGAGGTCACGATTGGACAAGAGCAATGCGCGGCAGTTGTGTT
GAGTACGGCACCGCCATGCTGTGTTGTGAGTCCCGAAATTCCTGTTTCTT
ATGGAGAAGGTTGCTAATCATGACGACTGTCAAATTTTAAGAGCAGCTGA
GGCAGCTTGTATCGCAGTACCGCTCTGTGTGGAGTTGTCTCAACTCGTGG
GATGCATGAAAGAAGAGTGCCACTGTCTTCATTGCTTCACGATAACAAAA
GGTATCGACGACGCGCAAGCGGGATATCTGACAGGAACGCGGCTCAATAG
TTATTTAGTTGGAGCAGGGCCAAAAAGCAGTAAATAGAATTCCAGCTAGA
CGAATAAATTCAGATCTATTGAGTACATGAACTTGTTCACTTTAGGAGGG
TTCACTTGAGAAGGGTAGAAATCTACACAGAACTCGAATGCCGACAACAT
TTTTGGGATCCGGCGTAGCCCACCGTCGTTCGTACTACCACCACCGGTAC
CGAAGGTAGTAGATAGTCTGCGAACAAGAACCTGTGTGCTCTCTACTAAA
CTCTATCCACCAACATCATCGTCAGTCTGACCTCCAAGTCCACGCGTGTG
AATTTGTTTGGTTGCGCTCATTTCTTTTGAAGAACAAGTGTTTTACTGAA
GCACATCTTAGCCTCACACACTGTTTTGTGAACAGCCAGATCCTGTCAAC
AGCGTGACAATGGAACCTCAACCCTCTTCAGCTCCGGAATTCGAACAAGA
GCCAGAATTATTCGCAGCTTCAGCATCTGAAAAAAAAGCCATCGCTTCAG
GGAAAACTGAGTCAGATGCATCTGATCTGTCAGCTCTGTCTGAGGAACCG
CACAGCGCAACGCGAAAGGAGCACGACGACCACCAACAAGCGGTGGGAAA
GAAAGAATCAGAGGAATCCACAGAATCCAAAACCGTATCAAACCCAGAAA
CTTCTAAGGTTGAACAAGAAGTAGCCAGCGTCGAATTGAATGCTTCAGAT
CCGAACAGCGAGCGGCCCTTGAGTAAGGAGGAGCTCATTGAGGAGGCACT
TAACTGCCCTTGCATTTCTTCCATGAAAGAAGGATCCTGTGGAGATTCGT
TTATCGATGCATATAAATGCTTTTTGCAAAGCGAGACCGAGCCTAAAGGT
ATGGACTGCATGGATCAATTTAAAACCATGCAATCCTGTCTTGCAGAGCA
TCCTGAGGAATACAATCTAGATGATGACGAAGCCGATGATCCATTTGCAA
TGGCAAAGGAAAAGCAGGAACAAGACACACCGAAAGTCGCAGCTGAACCA
CCATCTGCGTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:476877..478938+

>Gchil2775.t1 ID=Gchil2775.t1|Name=Gchil2775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00004406_pilon:476877..478938+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCAAGCGAGAGCCTAGAAATTGCCCATCGCGAGTTGGAGAACGC
AAATAGTGGAAACAAGAAGGATGTCATCGACCACgaaaaagacgaagaag
aagatcaagaagaagatgaTAACAAAACTCGGAAGGATGCTTGCAGGAAA
GCTGATTGTAAGGTTTTGAGGGACTCGCTGAACTGCTCAACCGCAGGTAC
ATACTCCAAGATTGGATTTGTTCCACTTTTGAGCATCAAAAATATGGGTT
ACTTGTTTGCAAGCGTCTCATCCGGTATTAGTGGTTTGCGTCCCAGATTT
TTCTCCATGGAAGGAGCAGGGGGTCGGACAGGGTACACAATTTTTGTTGG
TTCGCCGTATGGAGCACCAACAACAGTATTTGCGATCATGCAACCCACAC
GAGTTGGCCCGGCACCTGAGGGTCCATTGAAATTCCTGCTCGAACAAGCG
CTCATTTCATCACCTGCCCGTGACCGAGTTCCTCTAAAGTCCAAACTCAT
CCGGTTCGGAAAATTCGAGGATTCGGCCTGTACGTTCAAAGAAGATACTC
CTTTCCGAGCACTGCCAGCAGGTTTGCCAGATCCTGTCAACAGCGTGACA
ATGGAACCTCAACCCTCTTCAGCTCCGGAATTCGAACAAGAGCCAGAATT
ATTCGCAGCTTCAGCATCTGAAAAAAAAGCCATCGCTTCAGGGAAAACTG
AGTCAGATGCATCTGATCTGTCAGCTCTGTCTGAGGAACCGCACAGCGCA
ACGCGAAAGGAGCACGACGACCACCAACAAGCGGTGGGAAAGAAAGAATC
AGAGGAATCCACAGAATCCAAAACCGTATCAAACCCAGAAACTTCTAAGG
TTGAACAAGAAGTAGCCAGCGTCGAATTGAATGCTTCAGATCCGAACAGC
GAGCGGCCCTTGAGTAAGGAGGAGCTCATTGAGGAGGCACTTAACTGCCC
TTGCATTTCTTCCATGAAAGAAGGATCCTGTGGAGATTCGTTTATCGATG
CATATAAATGCTTTTTGCAAAGCGAGACCGAGCCTAAAGGTATGGACTGC
ATGGATCAATTTAAAACCATGCAATCCTGTCTTGCAGAGCATCCTGAGGA
ATACAATCTAGATGATGACGAAGCCGATGATCCATTTGCAATGGCAAAGG
AAAAGCAGGAACAAGACACACCGAAAGTCGCAGCTGAACCACCATCTGCG
TGA
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