Gchil2772.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2772.t1
Unique Name	Gchil2772.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:458984..460636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2772	Gchil2772	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 458984..460636 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2772.t1.start1	Gchil2772.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 458984..458986 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2772.t1.CDS1	Gchil2772.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 458984..460636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2772.t1.exon1	Gchil2772.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 458984..460636 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2772.t1.stop1	Gchil2772.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 460634..460636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2772.t1	Gchil2772.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 458984..460636 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:458984..460636+
coding sequence from alignment at tig00004406_pilon:458984..460636+

mRNA sequence

>Gchil2772.t1 ID=Gchil2772.t1|Name=Gchil2772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MSHPDRHNTSATPALGGSTGFRSAPHPGDVTNLAYEDRRIGARFRGQADP
PQWPTYDALVGANPRTRHGSAMLRYTPWFHPLAVRDEDLIQSYTDNSEML
LGNLPGVVTMSWDWRNRIAIPVHHILRRRGESSAEAQAALVRIAYLRHHR
APFEFPIPPEVEFDVHLYRTRGEVSYCDRLNGLETLAWRGTPIARQEALC
WARPILRAEIRYQPRQSRSNFLQNFIRDERRWRAQTGYFVPYQNTEIERI
APAHRRGRYVSLPDWWSSLEACWGCFVELPPVFTYVGSSILNDPQSGWWS
VVVSEWAVRTAAFILAEAYDQYRLWYVPPRVRAAIRRLDMRIPLGGEANE
EEMLGLLDFVEGVQWDEVPLENSQRIQPRRGSGPGLGRNTALAGDFVYFD
PWEYHEISREEAEANGHAPREVPADHTRGYVDSSDYYRDYADGDPMVDNE
PEDPGYAPMEDDGSGEAGEESVEYGGAAPSGAADAMRTDSYPTASVAGPP
ATAAGAERGEVIARFLREVGLRPSEISGDVAAMRDALANLLGGGPPRAEE
*

spliced messenger RNA

>Gchil2772.t1 ID=Gchil2772.t1|Name=Gchil2772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004406_pilon:458984..460636+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcccaccccgaccgtcataacacatccgcgactcccgcccttggcgg
ttccaccggcttccggtccgcgccccaccctggggatgttaccaacctcg
cgtacgaagaccgccgtattggcgcccgctttcgcggacaggcggaccca
ccgcagtggccgacctacgacgcccttgtgggtgcaaatccgagaactcg
gcatggctccgcgatgttgcggtatacgccttggtttcacccattggctg
tccgcgacgaggatttgatccaatcctacaccgataattcggagatgctc
ctgggcaacctgcccggcgtggtgaccatgtcctgggattggcgtaatcg
catcgccatcccggtacaccacatactccgccgacgcggtgaatcctctg
cggaggctcaagccgcgcttgtgcggatcgcttatctcaggcaccatcgg
gcgcctttcgagttcccgataccgccagaggtcgaattcgacgtccacct
ttaccgcactcgcggggaagtgtcgtactgtgaccgtcttaacggattgg
aaaccctcgcttggaggggcacaccgatcgctcggcaagaagccctttgc
tgggcacgaccgattcttcgggcagaaatccgctaccaaccgcggcagtc
gcgctcgaacttccttcagaacttcatccgcgatgagcggcgttggcggg
cccagaccgggtatttcgtaccgtaccagaacacggagattgagcgcatc
gcgcctgctcaccgacgtggtcggtacgtcagtctcccagactggtggtc
ctccttggaggcgtgctggggttgcttcgttgagctgcccccagtattca
cctatgtagggtcgtcgatcttgaacgatccccagtcggggtggtggtcc
gtcgtggtaagcgaatgggccgtccgcactgcggcttttatcctcgctga
ggcgtacgaccaataccgattgtggtacgtgccaccgcgtgtgcgggctg
caatccgtcgtttggacatgcgcatccccctcgggggcgaggcgaacgaa
gaagagatgctgggcctcctcgactttgtggagggggtccagtgggatga
ggtcccgctggagaactcccaacgcattcaaccgcgtcgcgggtctggcc
ccggactcgggaggaacaccgcgctagcgggggatttcgtctacttcgac
ccctgggagtaccacgagatcagccgcgaggaagcggaagccaacgggca
tgcgccgcgtgaagtcccggccgaccacacgcgagggtatgtcgactcga
gtgactattaccgcgactatgcggatggtgaccccatggtcgacaacgaa
ccggaggatccgggttacgctccgatggaggatgacgggtccggcgaggc
cggtgaggagtccgttgaatacggtggtgcggctccatccggggctgctg
atgccatgcgaacggattcctatccgactgcatcggtggcgggcccgccc
gcaactgccgctggcgcggagcggggcgaggtcatcgcgcgcttccttcg
ggaggtggggcttcgcccttccgagatctcgggtgatgtggccgccatgc
gggatgccttagccaacctcctgggcgggggtccacctcgtgcggaggaa
tga

protein sequence of Gchil2772.t1

>Gchil2772.t1 ID=Gchil2772.t1|Name=Gchil2772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MSHPDRHNTSATPALGGSTGFRSAPHPGDVTNLAYEDRRIGARFRGQADP
PQWPTYDALVGANPRTRHGSAMLRYTPWFHPLAVRDEDLIQSYTDNSEML
LGNLPGVVTMSWDWRNRIAIPVHHILRRRGESSAEAQAALVRIAYLRHHR
APFEFPIPPEVEFDVHLYRTRGEVSYCDRLNGLETLAWRGTPIARQEALC
WARPILRAEIRYQPRQSRSNFLQNFIRDERRWRAQTGYFVPYQNTEIERI
APAHRRGRYVSLPDWWSSLEACWGCFVELPPVFTYVGSSILNDPQSGWWS
VVVSEWAVRTAAFILAEAYDQYRLWYVPPRVRAAIRRLDMRIPLGGEANE
EEMLGLLDFVEGVQWDEVPLENSQRIQPRRGSGPGLGRNTALAGDFVYFD
PWEYHEISREEAEANGHAPREVPADHTRGYVDSSDYYRDYADGDPMVDNE
PEDPGYAPMEDDGSGEAGEESVEYGGAAPSGAADAMRTDSYPTASVAGPP
ATAAGAERGEVIARFLREVGLRPSEISGDVAAMRDALANLLGGGPPRAEE
*

mRNA from alignment at tig00004406_pilon:458984..460636+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2772.t1 ID=Gchil2772.t1|Name=Gchil2772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004406_pilon:458984..460636+ (Gracilaria chilensis NLEC103_M9 male)
atgtcccaccccgaccgtcataacacatccgcgactcccgcccttggcgg
ttccaccggcttccggtccgcgccccaccctggggatgttaccaacctcg
cgtacgaagaccgccgtattggcgcccgctttcgcggacaggcggaccca
ccgcagtggccgacctacgacgcccttgtgggtgcaaatccgagaactcg
gcatggctccgcgatgttgcggtatacgccttggtttcacccattggctg
tccgcgacgaggatttgatccaatcctacaccgataattcggagatgctc
ctgggcaacctgcccggcgtggtgaccatgtcctgggattggcgtaatcg
catcgccatcccggtacaccacatactccgccgacgcggtgaatcctctg
cggaggctcaagccgcgcttgtgcggatcgcttatctcaggcaccatcgg
gcgcctttcgagttcccgataccgccagaggtcgaattcgacgtccacct
ttaccgcactcgcggggaagtgtcgtactgtgaccgtcttaacggattgg
aaaccctcgcttggaggggcacaccgatcgctcggcaagaagccctttgc
tgggcacgaccgattcttcgggcagaaatccgctaccaaccgcggcagtc
gcgctcgaacttccttcagaacttcatccgcgatgagcggcgttggcggg
cccagaccgggtatttcgtaccgtaccagaacacggagattgagcgcatc
gcgcctgctcaccgacgtggtcggtacgtcagtctcccagactggtggtc
ctccttggaggcgtgctggggttgcttcgttgagctgcccccagtattca
cctatgtagggtcgtcgatcttgaacgatccccagtcggggtggtggtcc
gtcgtggtaagcgaatgggccgtccgcactgcggcttttatcctcgctga
ggcgtacgaccaataccgattgtggtacgtgccaccgcgtgtgcgggctg
caatccgtcgtttggacatgcgcatccccctcgggggcgaggcgaacgaa
gaagagatgctgggcctcctcgactttgtggagggggtccagtgggatga
ggtcccgctggagaactcccaacgcattcaaccgcgtcgcgggtctggcc
ccggactcgggaggaacaccgcgctagcgggggatttcgtctacttcgac
ccctgggagtaccacgagatcagccgcgaggaagcggaagccaacgggca
tgcgccgcgtgaagtcccggccgaccacacgcgagggtatgtcgactcga
gtgactattaccgcgactatgcggatggtgaccccatggtcgacaacgaa
ccggaggatccgggttacgctccgatggaggatgacgggtccggcgaggc
cggtgaggagtccgttgaatacggtggtgcggctccatccggggctgctg
atgccatgcgaacggattcctatccgactgcatcggtggcgggcccgccc
gcaactgccgctggcgcggagcggggcgaggtcatcgcgcgcttccttcg
ggaggtggggcttcgcccttccgagatctcgggtgatgtggccgccatgc
gggatgccttagccaacctcctgggcgggggtccacctcgtgcggaggaa
tga

Coding sequence (CDS) from alignment at tig00004406_pilon:458984..460636+

>Gchil2772.t1 ID=Gchil2772.t1|Name=Gchil2772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004406_pilon:458984..460636+ (Gracilaria chilensis NLEC103_M9 male)
atgtcccaccccgaccgtcataacacatccgcgactcccgcccttggcgg
ttccaccggcttccggtccgcgccccaccctggggatgttaccaacctcg
cgtacgaagaccgccgtattggcgcccgctttcgcggacaggcggaccca
ccgcagtggccgacctacgacgcccttgtgggtgcaaatccgagaactcg
gcatggctccgcgatgttgcggtatacgccttggtttcacccattggctg
tccgcgacgaggatttgatccaatcctacaccgataattcggagatgctc
ctgggcaacctgcccggcgtggtgaccatgtcctgggattggcgtaatcg
catcgccatcccggtacaccacatactccgccgacgcggtgaatcctctg
cggaggctcaagccgcgcttgtgcggatcgcttatctcaggcaccatcgg
gcgcctttcgagttcccgataccgccagaggtcgaattcgacgtccacct
ttaccgcactcgcggggaagtgtcgtactgtgaccgtcttaacggattgg
aaaccctcgcttggaggggcacaccgatcgctcggcaagaagccctttgc
tgggcacgaccgattcttcgggcagaaatccgctaccaaccgcggcagtc
gcgctcgaacttccttcagaacttcatccgcgatgagcggcgttggcggg
cccagaccgggtatttcgtaccgtaccagaacacggagattgagcgcatc
gcgcctgctcaccgacgtggtcggtacgtcagtctcccagactggtggtc
ctccttggaggcgtgctggggttgcttcgttgagctgcccccagtattca
cctatgtagggtcgtcgatcttgaacgatccccagtcggggtggtggtcc
gtcgtggtaagcgaatgggccgtccgcactgcggcttttatcctcgctga
ggcgtacgaccaataccgattgtggtacgtgccaccgcgtgtgcgggctg
caatccgtcgtttggacatgcgcatccccctcgggggcgaggcgaacgaa
gaagagatgctgggcctcctcgactttgtggagggggtccagtgggatga
ggtcccgctggagaactcccaacgcattcaaccgcgtcgcgggtctggcc
ccggactcgggaggaacaccgcgctagcgggggatttcgtctacttcgac
ccctgggagtaccacgagatcagccgcgaggaagcggaagccaacgggca
tgcgccgcgtgaagtcccggccgaccacacgcgagggtatgtcgactcga
gtgactattaccgcgactatgcggatggtgaccccatggtcgacaacgaa
ccggaggatccgggttacgctccgatggaggatgacgggtccggcgaggc
cggtgaggagtccgttgaatacggtggtgcggctccatccggggctgctg
atgccatgcgaacggattcctatccgactgcatcggtggcgggcccgccc
gcaactgccgctggcgcggagcggggcgaggtcatcgcgcgcttccttcg
ggaggtggggcttcgcccttccgagatctcgggtgatgtggccgccatgc
gggatgccttagccaacctcctgggcgggggtccacctcgtgcggaggaa
tga