Gchil2768.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2768.t1
Unique NameGchil2768.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:383542..384414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40127.XP_009855278.1
Preferred nameTHG1
PFAMsThg1,Thg1C
Max annot lvl4751|Fungi
KEGG koko:K10761
GOsGO:0000966,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008192,GO:0008193,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070568,GO:0071704,GO:0090304,GO:0099116,GO:1901360
Evalue7.35e-90
EggNOG OGsCOG4021@1|root,KOG2721@2759|Eukaryota,38EX4@33154|Opisthokonta,3NXAV@4751|Fungi,3QNXU@4890|Ascomycota,211BB@147550|Sordariomycetes,3U6I6@5139|Sordariales,3UHJI@5148|Sordariaceae
EC2.7.7.79
DescriptionAdds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage
COG categoryH
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2768Gchil2768Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 383542..384414 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2768.t1.stop1Gchil2768.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 383542..383544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2768.t1.CDS1Gchil2768.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 383542..384414 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2768.t1.exon1Gchil2768.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 383542..384414 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2768.t1.start1Gchil2768.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 384412..384414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2768.t1Gchil2768.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 383542..384414 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2768.t1 ID=Gchil2768.t1|Name=Gchil2768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MACSRFEYVKFFENHQRLLPGCWSVIRLDGRCFTSFAKKHSFRKPNDERA
LDLMNAAATSVLSTFDNHLLLAYGQSDEYSFVMKRESNLFSRRESKILST
VASLFTSSYVVNWKKYMDTDLKEPPTFDGRIVMYPTTKHLRDYLSWRQAD
THINNLFNTTFWALVNHGGNSLQEAEYLLKGTNSKEKNEILFSRFSINYN
NEPQMFRKGSVIIRKPVGDQQSLQKRRRLETNSNETPTSTLDVTQETERR
DGTETEYNVLHVDIIKDEFWENYPYLLWPPDESPPRIRKN*
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spliced messenger RNA

>Gchil2768.t1 ID=Gchil2768.t1|Name=Gchil2768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004406_pilon:383542..384414- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATGTTCTCGCTTCGAGTACGTCAAGTTCTTTGAGAATCATCAACG
TCTTCTCCCGGGTTGTTGGTCTGTCATTCGACTCGACGGCCGATGCTTCA
CCTCTTTTGCTAAAAAACATTCGTTTCGAAAACCCAATGATGAGCGAGCC
TTAGACCTAATGAACGCAGCTGCAACATCCGTATTGAGCACGTTTGACAA
CCATCTATTACTGGCGTACGGGCAGAGTGATGAGTATAGCTTCGTCATGA
AGCGAGAGTCTAATTTGTTTTCCAGACGTGAAAGCAAGATTCTTTCAACG
GTTGCGTCATTGTTTACATCGTCTTATGTGGTAAATTGGAAAAAGTATAT
GGATACTGACTTGAAGGAGCCCCCGACATTTGATGGTCGAATTGTCATGT
ATCCCACTACCAAGCATTTGCGAGATTATCTCTCTTGGCGCCAAGCAGAC
ACGCACATCAACAACCTTTTCAATACAACTTTTTGGGCGCTTGTGAATCA
CGGTGGCAATTCTCTGCAAGAAGCAGAATATTTATTAAAGGGCACTAATT
CAAAAGAGAAGAATGAGATATTATTCTCCCGATTTAGTATTAACTACAAC
AATGAACCTCAGATGTTTCGTAAAGGGTCCGTTATCATAAGAAAACCAGT
CGGCGATCAACAGAGCTTACAAAAGCGAAGACGCTTGGAAACAAATTCAA
ATGAAACCCCAACTTCTACTCTTGATGTGACTCAAGAAACGGAACGAAGA
GATGGAACCGAGACAGAATATAACGTTCTTCATGTAGACATTATCAAAGA
TGAGTTTTGGGAGAATTACCCCTATCTTTTGTGGCCCCCGGATGAATCTC
CGCCTAGAATACGAAAGAATTGA
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protein sequence of Gchil2768.t1

>Gchil2768.t1 ID=Gchil2768.t1|Name=Gchil2768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MACSRFEYVKFFENHQRLLPGCWSVIRLDGRCFTSFAKKHSFRKPNDERA
LDLMNAAATSVLSTFDNHLLLAYGQSDEYSFVMKRESNLFSRRESKILST
VASLFTSSYVVNWKKYMDTDLKEPPTFDGRIVMYPTTKHLRDYLSWRQAD
THINNLFNTTFWALVNHGGNSLQEAEYLLKGTNSKEKNEILFSRFSINYN
NEPQMFRKGSVIIRKPVGDQQSLQKRRRLETNSNETPTSTLDVTQETERR
DGTETEYNVLHVDIIKDEFWENYPYLLWPPDESPPRIRKN*
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mRNA from alignment at tig00004406_pilon:383542..384414-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2768.t1 ID=Gchil2768.t1|Name=Gchil2768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004406_pilon:383542..384414- (Gracilaria chilensis NLEC103_M9 male)
ATGGCATGTTCTCGCTTCGAGTACGTCAAGTTCTTTGAGAATCATCAACG
TCTTCTCCCGGGTTGTTGGTCTGTCATTCGACTCGACGGCCGATGCTTCA
CCTCTTTTGCTAAAAAACATTCGTTTCGAAAACCCAATGATGAGCGAGCC
TTAGACCTAATGAACGCAGCTGCAACATCCGTATTGAGCACGTTTGACAA
CCATCTATTACTGGCGTACGGGCAGAGTGATGAGTATAGCTTCGTCATGA
AGCGAGAGTCTAATTTGTTTTCCAGACGTGAAAGCAAGATTCTTTCAACG
GTTGCGTCATTGTTTACATCGTCTTATGTGGTAAATTGGAAAAAGTATAT
GGATACTGACTTGAAGGAGCCCCCGACATTTGATGGTCGAATTGTCATGT
ATCCCACTACCAAGCATTTGCGAGATTATCTCTCTTGGCGCCAAGCAGAC
ACGCACATCAACAACCTTTTCAATACAACTTTTTGGGCGCTTGTGAATCA
CGGTGGCAATTCTCTGCAAGAAGCAGAATATTTATTAAAGGGCACTAATT
CAAAAGAGAAGAATGAGATATTATTCTCCCGATTTAGTATTAACTACAAC
AATGAACCTCAGATGTTTCGTAAAGGGTCCGTTATCATAAGAAAACCAGT
CGGCGATCAACAGAGCTTACAAAAGCGAAGACGCTTGGAAACAAATTCAA
ATGAAACCCCAACTTCTACTCTTGATGTGACTCAAGAAACGGAACGAAGA
GATGGAACCGAGACAGAATATAACGTTCTTCATGTAGACATTATCAAAGA
TGAGTTTTGGGAGAATTACCCCTATCTTTTGTGGCCCCCGGATGAATCTC
CGCCTAGAATACGAAAGAATTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:383542..384414-

>Gchil2768.t1 ID=Gchil2768.t1|Name=Gchil2768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00004406_pilon:383542..384414- (Gracilaria chilensis NLEC103_M9 male)
ATGGCATGTTCTCGCTTCGAGTACGTCAAGTTCTTTGAGAATCATCAACG
TCTTCTCCCGGGTTGTTGGTCTGTCATTCGACTCGACGGCCGATGCTTCA
CCTCTTTTGCTAAAAAACATTCGTTTCGAAAACCCAATGATGAGCGAGCC
TTAGACCTAATGAACGCAGCTGCAACATCCGTATTGAGCACGTTTGACAA
CCATCTATTACTGGCGTACGGGCAGAGTGATGAGTATAGCTTCGTCATGA
AGCGAGAGTCTAATTTGTTTTCCAGACGTGAAAGCAAGATTCTTTCAACG
GTTGCGTCATTGTTTACATCGTCTTATGTGGTAAATTGGAAAAAGTATAT
GGATACTGACTTGAAGGAGCCCCCGACATTTGATGGTCGAATTGTCATGT
ATCCCACTACCAAGCATTTGCGAGATTATCTCTCTTGGCGCCAAGCAGAC
ACGCACATCAACAACCTTTTCAATACAACTTTTTGGGCGCTTGTGAATCA
CGGTGGCAATTCTCTGCAAGAAGCAGAATATTTATTAAAGGGCACTAATT
CAAAAGAGAAGAATGAGATATTATTCTCCCGATTTAGTATTAACTACAAC
AATGAACCTCAGATGTTTCGTAAAGGGTCCGTTATCATAAGAAAACCAGT
CGGCGATCAACAGAGCTTACAAAAGCGAAGACGCTTGGAAACAAATTCAA
ATGAAACCCCAACTTCTACTCTTGATGTGACTCAAGAAACGGAACGAAGA
GATGGAACCGAGACAGAATATAACGTTCTTCATGTAGACATTATCAAAGA
TGAGTTTTGGGAGAATTACCCCTATCTTTTGTGGCCCCCGGATGAATCTC
CGCCTAGAATACGAAAGAATTGA
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