Gchil2765.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2765.t1
Unique NameGchil2765.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:375651..377856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706457.1
Preferred nameNDUFS2
PFAMsComplex1_49kDa
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03935,ko:K06669
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04110,ko04111,ko04113,ko04114,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04110,map04111,map04113,map04114,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019899,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042493,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue5.7e-242
EggNOG OGsCOG0649@1|root,KOG2870@2759|Eukaryota
EC1.6.5.3,1.6.99.3
Descriptionquinone binding
COG categoryC
BRITEko00000,ko00001,ko00002,ko00535,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2765Gchil2765Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 375651..377856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2765.t1Gchil2765.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 375651..377856 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2765.t1.stop1Gchil2765.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 375651..375653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2765.t1.CDS1Gchil2765.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 375651..375665 -
Gchil2765.t1.CDS2Gchil2765.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 376001..376807 -
Gchil2765.t1.CDS3Gchil2765.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 376902..377258 -
Gchil2765.t1.CDS4Gchil2765.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 377458..377856 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2765.t1.exon1Gchil2765.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 375651..375665 -
Gchil2765.t1.exon2Gchil2765.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 376001..376807 -
Gchil2765.t1.exon3Gchil2765.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 376902..377258 -
Gchil2765.t1.exon4Gchil2765.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 377458..377856 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2765.t1.intron1Gchil2765.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 375666..376000 -
Gchil2765.t1.intron2Gchil2765.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 376808..376901 -
Gchil2765.t1.intron3Gchil2765.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 377259..377457 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2765.t1.start1Gchil2765.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 377854..377856 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2765.t1 ID=Gchil2765.t1|Name=Gchil2765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=526bp
MQHTPPSSRYTTRKLLLTSSLTSKPLRPAQLIYLQDTAPTTNTMLRTFAS
RFGSISHQSCSNVRALATGGGQLATGGSSKKADPHYIDSAVNNVAGDVHF
DQLEPHELARMRADREKQLDIRNFTLNFGPQHPSSCFGINTKLTISGFAN
EAAHGVLRLVLELDGEVAVKLDPHVGLLHRGTEKLIEYKTYLQALPYFDR
LDYVSMMAQEQCYSLAVEKLLQIEVPMRAKYIRTLFAEITRILNHLLAVG
CHGMDVGALTPFLWAFEEREKLMEFYERVSGARLHSAYVRPGGVAQDIPL
GLMDDIYAFCKSFVSRIDEIEEMLTGNRIWKQRLVDIGVVTAAEALDWGF
SGPMLRGSGVSWDLRKAQPYDAYEFVNFKIPVGINGDCYDRYLIRVEEMR
QSLDIIVQCLNQMPEGEIKVDDRKISPPSRENMKQSMEALIHHFKLYSEG
FSVPAGDTYTAVEAPKGEFGVYLVSNGTNRPYRCGIRAPGFAHLSALNMM
GKGHMVADAVTIIGTQDIVLYEVDR*
back to top

spliced messenger RNA

>Gchil2765.t1 ID=Gchil2765.t1|Name=Gchil2765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00004406_pilon:375651..377856- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACACACACCTCCCTCATCGCGCTACACAACCCGCAAGCTACTCCT
CACGTCCTCACTGACCTCGAAACCGCTCCGCCCTGCTCAGCTCATTTATC
TTCAGGACACCGCCCCGACGACCAATACCATGTTGCGCACATTCGCTTCT
CGTTTCGGTTCCATCTCTCACCAAAGCTGCTCCAATGTGCGCGCCCTGGC
AACGGGAGGGGGTCAGTTGGCGACGGGTGGCTCTTCGAAAAAGGCTGACC
CGCACTACATCGACTCCGCGGTGAACAATGTGGCTGGTGATGTTCATTTT
GATCAGCTTGAGCCTCACGAACTTGCTCGTATGCGTGCTGATCGAGAAAA
ACAGCTCGATATCCGAAACTTTACGCTCAATTTTGGTCCACAGCACCCGT
CGTCCTGTTTTGGAATAAATACCAAGCTAACTATCTCCGGATTTGCGAAC
GAAGCTGCTCACGGAGTGCTCCGTCTCGTGCTAGAACTTGATGGCGAAGT
CGCCGTCAAATTAGACCCTCATGTAGGCCTTCTACACCGCGGTACAGAAA
AACTAATCGAGTACAAAACCTACCTCCAAGCGCTTCCGTATTTTGATCGT
TTGGACTATGTGTCCATGATGGCTCAGGAACAATGCTATTCTCTGGCTGT
CGAAAAACTGCTTCAGATTGAGGTTCCGATGCGCGCCAAGTATATTCGAA
CACTTTTCGCGGAGATCACTCGTATTCTAAACCATCTTCTCGCAGTCGGA
TGTCATGGAATGGATGTAGGTGCTTTGACTCCGTTTCTGTGGGCTTTTGA
AGAAAGAGAAAAGCTCATGGAGTTCTACGAACGAGTCTCAGGTGCTCGCC
TACATTCAGCATATGTTAGACCAGGTGGCGTTGCTCAAGACATTCCTCTC
GGGCTCATGGATGATATTTATGCTTTCTGCAAGTCTTTTGTTTCTAGAAT
TGATGAAATTGAAGAAATGTTGACTGGAAATCGCATCTGGAAGCAAAGAC
TTGTCGACATTGGCGTAGTTACTGCCGCAGAGGCTCTTGATTGGGGATTC
TCAGGACCCATGCTTCGGGGATCTGGCGTGTCATGGGATTTACGAAAGGC
GCAACCGTACGATGCCTATGAGTTTGTTAACTTTAAGATCCCAGTTGGCA
TCAACGGAGACTGTTATGACCGTTATCTTATCCGAGTAGAGGAAATGAGA
CAATCTTTGGATATCATTGTTCAGTGCCTTAACCAAATGCCCGAAGGAGA
AATCAAGGTAGATGACCGTAAGATTTCACCTCCTTCACGTGAGAATATGA
AGCAATCAATGGAAGCACTCATTCATCACTTCAAGCTCTATTCTGAAGGG
TTCTCTGTACCTGCTGGGGATACTTACACTGCTGTTGAAGCTCCAAAGGG
AGAGTTTGGAGTCTATTTAGTGTCGAATGGTACTAATCGTCCATACAGGT
GCGGTATTCGAGCGCCAGGGTTTGCGCATCTTTCGGCTCTGAACATGATG
GGAAAAGGACACATGGTAGCTGACGCGGTGACCATCATCGGAACACAGGA
CATTGTATTGTACGAGGTTGATCGTTGA
back to top

protein sequence of Gchil2765.t1

>Gchil2765.t1 ID=Gchil2765.t1|Name=Gchil2765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=526bp
MQHTPPSSRYTTRKLLLTSSLTSKPLRPAQLIYLQDTAPTTNTMLRTFAS
RFGSISHQSCSNVRALATGGGQLATGGSSKKADPHYIDSAVNNVAGDVHF
DQLEPHELARMRADREKQLDIRNFTLNFGPQHPSSCFGINTKLTISGFAN
EAAHGVLRLVLELDGEVAVKLDPHVGLLHRGTEKLIEYKTYLQALPYFDR
LDYVSMMAQEQCYSLAVEKLLQIEVPMRAKYIRTLFAEITRILNHLLAVG
CHGMDVGALTPFLWAFEEREKLMEFYERVSGARLHSAYVRPGGVAQDIPL
GLMDDIYAFCKSFVSRIDEIEEMLTGNRIWKQRLVDIGVVTAAEALDWGF
SGPMLRGSGVSWDLRKAQPYDAYEFVNFKIPVGINGDCYDRYLIRVEEMR
QSLDIIVQCLNQMPEGEIKVDDRKISPPSRENMKQSMEALIHHFKLYSEG
FSVPAGDTYTAVEAPKGEFGVYLVSNGTNRPYRCGIRAPGFAHLSALNMM
GKGHMVADAVTIIGTQDIVLYEVDR*
back to top

mRNA from alignment at tig00004406_pilon:375651..377856-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2765.t1 ID=Gchil2765.t1|Name=Gchil2765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2206bp|location=Sequence derived from alignment at tig00004406_pilon:375651..377856- (Gracilaria chilensis NLEC103_M9 male)
ATGCAACACACACCTCCCTCATCGCGCTACACAACCCGCAAGCTACTCCT
CACGTCCTCACTGACCTCGAAACCGCTCCGCCCTGCTCAGCTCATTTATC
TTCAGGACACCGCCCCGACGACCAATACCATGTTGCGCACATTCGCTTCT
CGTTTCGGTTCCATCTCTCACCAAAGCTGCTCCAATGTGCGCGCCCTGGC
AACGGGAGGGGGTCAGTTGGCGACGGGTGGCTCTTCGAAAAAGGCTGACC
CGCACTACATCGACTCCGCGGTGAACAATGTGGCTGGTGATGTTCATTTT
GATCAGCTTGAGCCTCACGAACTTGCTCGTATGCGTGCTGATCGAGAAAA
ACAGCTCGATATCCGAAACTTTACGCTCAATTTTGGTCCACAGCACCCGG
TATGCTCTCTCCTTTCTTTAAAAGCCAGCGTCTTGAAAAGCTAGCATGCT
ACCCACGGCACAATTTCGTTGAGTTGCTGATTTCTAACAAAACGAACTAT
GCAATCATCCATTTATTGTTTGTTGCAATGCCTTAATGTTTTTTGTTATT
GAAGGGTAAGTTGCCTACTGCTGTATTTACTCTGGAATCGCGCACGAGTC
GTCCTGTTTTGGAATAAATACCAAGCTAACTATCTCCGGATTTGCGAACG
AAGCTGCTCACGGAGTGCTCCGTCTCGTGCTAGAACTTGATGGCGAAGTC
GCCGTCAAATTAGACCCTCATGTAGGCCTTCTACACCGCGGTACAGAAAA
ACTAATCGAGTACAAAACCTACCTCCAAGCGCTTCCGTATTTTGATCGTT
TGGACTATGTGTCCATGATGGCTCAGGAACAATGCTATTCTCTGGCTGTC
GAAAAACTGCTTCAGATTGAGGTTCCGATGCGCGCCAAGTATATTCGAAC
ACTTTTCGCGGAGATCACTCGTATTCTAAACCATCTTCTCGCAGTCGGAT
GTCATGTACGTATGCGCTACATCTCATTCACTTGCGGTTATACGTGAGCG
CGAATTAACCGTTTCCTTCATTGTTGCCGCCACCTTTATGTGATACTAGG
GAATGGATGTAGGTGCTTTGACTCCGTTTCTGTGGGCTTTTGAAGAAAGA
GAAAAGCTCATGGAGTTCTACGAACGAGTCTCAGGTGCTCGCCTACATTC
AGCATATGTTAGACCAGGTGGCGTTGCTCAAGACATTCCTCTCGGGCTCA
TGGATGATATTTATGCTTTCTGCAAGTCTTTTGTTTCTAGAATTGATGAA
ATTGAAGAAATGTTGACTGGAAATCGCATCTGGAAGCAAAGACTTGTCGA
CATTGGCGTAGTTACTGCCGCAGAGGCTCTTGATTGGGGATTCTCAGGAC
CCATGCTTCGGGGATCTGGCGTGTCATGGGATTTACGAAAGGCGCAACCG
TACGATGCCTATGAGTTTGTTAACTTTAAGATCCCAGTTGGCATCAACGG
AGACTGTTATGACCGTTATCTTATCCGAGTAGAGGAAATGAGACAATCTT
TGGATATCATTGTTCAGTGCCTTAACCAAATGCCCGAAGGAGAAATCAAG
GTAGATGACCGTAAGATTTCACCTCCTTCACGTGAGAATATGAAGCAATC
AATGGAAGCACTCATTCATCACTTCAAGCTCTATTCTGAAGGGTTCTCTG
TACCTGCTGGGGATACTTACACTGCTGTTGAAGCTCCAAAGGGAGAGTTT
GGAGTCTATTTAGTGTCGAATGGTACTAATCGTCCATACAGGTGCGGTAT
TCGAGCGCCAGGGTTTGCGCATCTTTCGGCTCTGAACATGATGGGAAAAG
GACACATGGTAGCTGACGCGGTGACCATCATCGGAACACAGGACATTGTA
TTGTACGTATTATCGACGAATATGAGGTGTACGTAGCGAATTCCCAGTTC
TTCATACTGACCTATTCGGTTCGTTTTCATTTTATTTCTGTGTTGGGAAT
ATTGCGAACTATTGAAACTTGCAGCGTAAGTAACAGCATCAAACATCGTA
CTGTTTCGAAGAACATGAATCGAATTCAGGTCTAACTTGCAATTTATGTT
TTCTTTTCATCCTGTTTTGATAATCATGAACTACATAGGGTGTAAGTGAA
GCCTTCAGTTTTAATACGAATGTTCATCTCGAAAAAAAGTTTCACTGACC
ATGACCATATATCGTTCTGTTCTACATTAACATTTTCACAGGAGGTTGAT
CGTTGA
back to top

Coding sequence (CDS) from alignment at tig00004406_pilon:375651..377856-

>Gchil2765.t1 ID=Gchil2765.t1|Name=Gchil2765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1578bp|location=Sequence derived from alignment at tig00004406_pilon:375651..377856- (Gracilaria chilensis NLEC103_M9 male)
ATGCAACACACACCTCCCTCATCGCGCTACACAACCCGCAAGCTACTCCT
CACGTCCTCACTGACCTCGAAACCGCTCCGCCCTGCTCAGCTCATTTATC
TTCAGGACACCGCCCCGACGACCAATACCATGTTGCGCACATTCGCTTCT
CGTTTCGGTTCCATCTCTCACCAAAGCTGCTCCAATGTGCGCGCCCTGGC
AACGGGAGGGGGTCAGTTGGCGACGGGTGGCTCTTCGAAAAAGGCTGACC
CGCACTACATCGACTCCGCGGTGAACAATGTGGCTGGTGATGTTCATTTT
GATCAGCTTGAGCCTCACGAACTTGCTCGTATGCGTGCTGATCGAGAAAA
ACAGCTCGATATCCGAAACTTTACGCTCAATTTTGGTCCACAGCACCCGT
CGTCCTGTTTTGGAATAAATACCAAGCTAACTATCTCCGGATTTGCGAAC
GAAGCTGCTCACGGAGTGCTCCGTCTCGTGCTAGAACTTGATGGCGAAGT
CGCCGTCAAATTAGACCCTCATGTAGGCCTTCTACACCGCGGTACAGAAA
AACTAATCGAGTACAAAACCTACCTCCAAGCGCTTCCGTATTTTGATCGT
TTGGACTATGTGTCCATGATGGCTCAGGAACAATGCTATTCTCTGGCTGT
CGAAAAACTGCTTCAGATTGAGGTTCCGATGCGCGCCAAGTATATTCGAA
CACTTTTCGCGGAGATCACTCGTATTCTAAACCATCTTCTCGCAGTCGGA
TGTCATGGAATGGATGTAGGTGCTTTGACTCCGTTTCTGTGGGCTTTTGA
AGAAAGAGAAAAGCTCATGGAGTTCTACGAACGAGTCTCAGGTGCTCGCC
TACATTCAGCATATGTTAGACCAGGTGGCGTTGCTCAAGACATTCCTCTC
GGGCTCATGGATGATATTTATGCTTTCTGCAAGTCTTTTGTTTCTAGAAT
TGATGAAATTGAAGAAATGTTGACTGGAAATCGCATCTGGAAGCAAAGAC
TTGTCGACATTGGCGTAGTTACTGCCGCAGAGGCTCTTGATTGGGGATTC
TCAGGACCCATGCTTCGGGGATCTGGCGTGTCATGGGATTTACGAAAGGC
GCAACCGTACGATGCCTATGAGTTTGTTAACTTTAAGATCCCAGTTGGCA
TCAACGGAGACTGTTATGACCGTTATCTTATCCGAGTAGAGGAAATGAGA
CAATCTTTGGATATCATTGTTCAGTGCCTTAACCAAATGCCCGAAGGAGA
AATCAAGGTAGATGACCGTAAGATTTCACCTCCTTCACGTGAGAATATGA
AGCAATCAATGGAAGCACTCATTCATCACTTCAAGCTCTATTCTGAAGGG
TTCTCTGTACCTGCTGGGGATACTTACACTGCTGTTGAAGCTCCAAAGGG
AGAGTTTGGAGTCTATTTAGTGTCGAATGGTACTAATCGTCCATACAGGT
GCGGTATTCGAGCGCCAGGGTTTGCGCATCTTTCGGCTCTGAACATGATG
GGAAAAGGACACATGGTAGCTGACGCGGTGACCATCATCGGAACACAGGA
CATTGTATTGTACGAGGTTGATCGTTGA
back to top