Gchil2760.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2760.t1
Unique NameGchil2760.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:363720..364124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog158500.BV97_04547
Max annot lvl204457|Sphingomonadales
Evalue3.04e-05
EggNOG OGs28PWG@1|root,2ZCGU@2|Bacteria,1RJCD@1224|Proteobacteria,2UARK@28211|Alphaproteobacteria,2K5NQ@204457|Sphingomonadales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2760Gchil2760Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 363720..364124 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2760.t1.start1Gchil2760.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 363720..363722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2760.t1.CDS1Gchil2760.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 363720..364124 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2760.t1.exon1Gchil2760.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 363720..364124 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2760.t1.stop1Gchil2760.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 364122..364124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2760.t1Gchil2760.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 363720..364124 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2760.t1 ID=Gchil2760.t1|Name=Gchil2760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=135bp
MDPNTGKQIDRYRSVLEVGIRGKAYSQRNTYIWDDGRKQVKEFGGGPTDG
GFEIRNNVLKGTARSIGGSNLLFIAGLKESDTDATLMYEIVQMLGDDKRA
RMYQRSDGTKIISIVHVIEERVSTDDVFFDVSFA*
back to top

spliced messenger RNA

>Gchil2760.t1 ID=Gchil2760.t1|Name=Gchil2760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004406_pilon:363720..364124+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTAACACCGGGAAGCAAATAGACAGATACCGCAGTGTTCTGGA
AGTAGGAATTCGAGGCAAGGCCTATTCGCAGCGGAATACGTACATATGGG
ACGATGGGCGAAAACAGGTGAAGGAGTTTGGAGGAGGGCCTACTGATGGT
GGGTTTGAGATTAGAAACAATGTACTTAAAGGCACTGCACGAAGCATTGG
CGGAAGCAACTTATTGTTCATAGCAGGACTGAAAGAAAGTGATACCGATG
CCACGTTAATGTATGAAATTGTGCAAATGCTGGGCGATGACAAACGAGCT
AGAATGTATCAAAGAAGTGACGGGACGAAGATAATTTCAATAGTTCATGT
CATCGAGGAACGCGTTTCCACTGATGATGTATTCTTTGACGTGAGCTTTG
CGTAG
back to top

protein sequence of Gchil2760.t1

>Gchil2760.t1 ID=Gchil2760.t1|Name=Gchil2760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=135bp
MDPNTGKQIDRYRSVLEVGIRGKAYSQRNTYIWDDGRKQVKEFGGGPTDG
GFEIRNNVLKGTARSIGGSNLLFIAGLKESDTDATLMYEIVQMLGDDKRA
RMYQRSDGTKIISIVHVIEERVSTDDVFFDVSFA*
back to top

mRNA from alignment at tig00004406_pilon:363720..364124+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2760.t1 ID=Gchil2760.t1|Name=Gchil2760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004406_pilon:363720..364124+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTAACACCGGGAAGCAAATAGACAGATACCGCAGTGTTCTGGA
AGTAGGAATTCGAGGCAAGGCCTATTCGCAGCGGAATACGTACATATGGG
ACGATGGGCGAAAACAGGTGAAGGAGTTTGGAGGAGGGCCTACTGATGGT
GGGTTTGAGATTAGAAACAATGTACTTAAAGGCACTGCACGAAGCATTGG
CGGAAGCAACTTATTGTTCATAGCAGGACTGAAAGAAAGTGATACCGATG
CCACGTTAATGTATGAAATTGTGCAAATGCTGGGCGATGACAAACGAGCT
AGAATGTATCAAAGAAGTGACGGGACGAAGATAATTTCAATAGTTCATGT
CATCGAGGAACGCGTTTCCACTGATGATGTATTCTTTGACGTGAGCTTTG
CGTAG
back to top

Coding sequence (CDS) from alignment at tig00004406_pilon:363720..364124+

>Gchil2760.t1 ID=Gchil2760.t1|Name=Gchil2760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00004406_pilon:363720..364124+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTAACACCGGGAAGCAAATAGACAGATACCGCAGTGTTCTGGA
AGTAGGAATTCGAGGCAAGGCCTATTCGCAGCGGAATACGTACATATGGG
ACGATGGGCGAAAACAGGTGAAGGAGTTTGGAGGAGGGCCTACTGATGGT
GGGTTTGAGATTAGAAACAATGTACTTAAAGGCACTGCACGAAGCATTGG
CGGAAGCAACTTATTGTTCATAGCAGGACTGAAAGAAAGTGATACCGATG
CCACGTTAATGTATGAAATTGTGCAAATGCTGGGCGATGACAAACGAGCT
AGAATGTATCAAAGAAGTGACGGGACGAAGATAATTTCAATAGTTCATGT
CATCGAGGAACGCGTTTCCACTGATGATGTATTCTTTGACGTGAGCTTTG
CGTAG
back to top