Gchil2752.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2752.t1
Unique NameGchil2752.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:342036..343460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706511.1
PFAMsSHMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
GOsGO:0003674,GO:0003824,GO:0004372,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue7.83e-251
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota
EC2.1.2.1
Descriptionglycine hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2752Gchil2752Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 342036..343460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2752.t1.stop1Gchil2752.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 342036..342038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2752.t1.CDS1Gchil2752.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 342036..343460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2752.t1.exon1Gchil2752.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 342036..343460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2752.t1.start1Gchil2752.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 343458..343460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2752.t1Gchil2752.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 342036..343460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2752.t1 ID=Gchil2752.t1|Name=Gchil2752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=475bp
MSECYVNGHYNDAFAGFEGNRPVEQVDPELYELLVREKQRQYEGIELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDASAWGVNVQPYSGSTANFALYTGVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKSGYIDYDKLEESALTFRPKLLICGAS
AYPRDWDFERLRQIANKSGALLMCDMAHISGLVATGQASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDAEGKDSGKVYQWENKVNMAVFPGCQGG
PHNNTIGALAVALKEAMKPEFKEYCKQTCSNARVLGEQLVKMGYSLVTGG
TENHLVLWDLRPQGIGGSKVEKVCDVAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVEKDFVQVAAFLDRAVTLALSIQKEVGSKMKEFGPAAEKD
AGVKALREEVIEFSKAFPMPGGVL*
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spliced messenger RNA

>Gchil2752.t1 ID=Gchil2752.t1|Name=Gchil2752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00004406_pilon:342036..343460- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAGTGCTACGTGAACGGCCATTACAACGATGCATTTGCCGGATT
TGAGGGCAACCGCCCCGTGGAGCAAGTGGATCCGGAACTGTACGAGCTTC
TCGTCCGCGAGAAGCAGCGTCAGTACGAGGGAATCGAGCTGATCGCAAGT
GAGAACTTTACGTCTCGCGCTGTGATGGAGGTGTTGGGGTCGTCGTTGAC
CAACAAGTACTCGGAGGGTCTGCCCGGCGCTCGCTACTATGGTGGAAACG
AGGTGATCGATGACATTGAACGTCTGGTACAGAAACGCGCGTTGGAGTGC
TTTGGATTGGACGCTTCGGCGTGGGGTGTGAACGTGCAGCCGTACTCGGG
CTCCACCGCCAACTTTGCGCTGTACACGGGGGTGCTCAACCCGCACGACC
GCATCATGGGGCTTGATCTTCCGTCTGGCGGCCACCTCACGCACGGCTTT
TACACGGCGAAGAGGAAGATTTCGGCGACGAGTGTGTATTTTGAGTCGCT
TCCTTACAAGGTGGATGAGAAGAGCGGGTACATTGACTATGACAAGTTGG
AGGAAAGCGCGTTGACTTTTCGTCCCAAGTTGCTAATCTGCGGGGCCAGC
GCATACCCGCGCGACTGGGACTTTGAGCGTCTGCGACAGATTGCGAACAA
GAGCGGCGCTTTGCTGATGTGCGACATGGCTCACATCTCCGGTCTTGTGG
CGACAGGGCAGGCGTCGAGCCCGTTCAAGTTGTGTGACTTTGTGACGTCG
ACGACGCACAAGAGCCTGCGTGGGCCGCGTCAGGGGTTGATCTTCTACCG
TCGCGGGCCGATTCTGGACGCGGAAGGCAAGGATAGCGGCAAGGTGTACC
AGTGGGAGAACAAAGTGAACATGGCGGTGTTCCCGGGGTGCCAGGGCGGG
CCGCACAACAACACGATCGGGGCGCTTGCAGTGGCGTTGAAAGAGGCGAT
GAAGCCTGAATTCAAAGAGTATTGCAAGCAGACGTGCTCCAACGCGCGCG
TGCTCGGGGAGCAGTTGGTAAAGATGGGCTACTCGCTGGTGACGGGCGGG
ACGGAGAACCACCTGGTGCTGTGGGACTTGCGTCCGCAGGGCATTGGTGG
CTCCAAGGTGGAGAAGGTGTGCGATGTGGCGCACATCACGCTGAATAAGA
ACGCGGTGGCCGGGGACACTTCGGCGCTCAACCCCGGGGGGGTGCGCATT
GGGGCGCCGGCGATGACGTCGCGGGGGCTAGTAGAAAAGGACTTTGTGCA
GGTTGCGGCGTTCCTGGACCGGGCCGTGACGCTGGCGCTGAGCATCCAGA
AGGAGGTTGGGTCGAAGATGAAGGAGTTTGGGCCGGCGGCCGAGAAGGAC
GCGGGGGTGAAGGCGCTTCGCGAGGAGGTGATTGAGTTTTCTAAGGCTTT
CCCGATGCCAGGCGGGGTGCTCTGA
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protein sequence of Gchil2752.t1

>Gchil2752.t1 ID=Gchil2752.t1|Name=Gchil2752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=475bp
MSECYVNGHYNDAFAGFEGNRPVEQVDPELYELLVREKQRQYEGIELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDASAWGVNVQPYSGSTANFALYTGVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKSGYIDYDKLEESALTFRPKLLICGAS
AYPRDWDFERLRQIANKSGALLMCDMAHISGLVATGQASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDAEGKDSGKVYQWENKVNMAVFPGCQGG
PHNNTIGALAVALKEAMKPEFKEYCKQTCSNARVLGEQLVKMGYSLVTGG
TENHLVLWDLRPQGIGGSKVEKVCDVAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVEKDFVQVAAFLDRAVTLALSIQKEVGSKMKEFGPAAEKD
AGVKALREEVIEFSKAFPMPGGVL*
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mRNA from alignment at tig00004406_pilon:342036..343460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2752.t1 ID=Gchil2752.t1|Name=Gchil2752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00004406_pilon:342036..343460- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGAGTGCTACGTGAACGGCCATTACAACGATGCATTTGCCGGATT
TGAGGGCAACCGCCCCGTGGAGCAAGTGGATCCGGAACTGTACGAGCTTC
TCGTCCGCGAGAAGCAGCGTCAGTACGAGGGAATCGAGCTGATCGCAAGT
GAGAACTTTACGTCTCGCGCTGTGATGGAGGTGTTGGGGTCGTCGTTGAC
CAACAAGTACTCGGAGGGTCTGCCCGGCGCTCGCTACTATGGTGGAAACG
AGGTGATCGATGACATTGAACGTCTGGTACAGAAACGCGCGTTGGAGTGC
TTTGGATTGGACGCTTCGGCGTGGGGTGTGAACGTGCAGCCGTACTCGGG
CTCCACCGCCAACTTTGCGCTGTACACGGGGGTGCTCAACCCGCACGACC
GCATCATGGGGCTTGATCTTCCGTCTGGCGGCCACCTCACGCACGGCTTT
TACACGGCGAAGAGGAAGATTTCGGCGACGAGTGTGTATTTTGAGTCGCT
TCCTTACAAGGTGGATGAGAAGAGCGGGTACATTGACTATGACAAGTTGG
AGGAAAGCGCGTTGACTTTTCGTCCCAAGTTGCTAATCTGCGGGGCCAGC
GCATACCCGCGCGACTGGGACTTTGAGCGTCTGCGACAGATTGCGAACAA
GAGCGGCGCTTTGCTGATGTGCGACATGGCTCACATCTCCGGTCTTGTGG
CGACAGGGCAGGCGTCGAGCCCGTTCAAGTTGTGTGACTTTGTGACGTCG
ACGACGCACAAGAGCCTGCGTGGGCCGCGTCAGGGGTTGATCTTCTACCG
TCGCGGGCCGATTCTGGACGCGGAAGGCAAGGATAGCGGCAAGGTGTACC
AGTGGGAGAACAAAGTGAACATGGCGGTGTTCCCGGGGTGCCAGGGCGGG
CCGCACAACAACACGATCGGGGCGCTTGCAGTGGCGTTGAAAGAGGCGAT
GAAGCCTGAATTCAAAGAGTATTGCAAGCAGACGTGCTCCAACGCGCGCG
TGCTCGGGGAGCAGTTGGTAAAGATGGGCTACTCGCTGGTGACGGGCGGG
ACGGAGAACCACCTGGTGCTGTGGGACTTGCGTCCGCAGGGCATTGGTGG
CTCCAAGGTGGAGAAGGTGTGCGATGTGGCGCACATCACGCTGAATAAGA
ACGCGGTGGCCGGGGACACTTCGGCGCTCAACCCCGGGGGGGTGCGCATT
GGGGCGCCGGCGATGACGTCGCGGGGGCTAGTAGAAAAGGACTTTGTGCA
GGTTGCGGCGTTCCTGGACCGGGCCGTGACGCTGGCGCTGAGCATCCAGA
AGGAGGTTGGGTCGAAGATGAAGGAGTTTGGGCCGGCGGCCGAGAAGGAC
GCGGGGGTGAAGGCGCTTCGCGAGGAGGTGATTGAGTTTTCTAAGGCTTT
CCCGATGCCAGGCGGGGTGCTCTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:342036..343460-

>Gchil2752.t1 ID=Gchil2752.t1|Name=Gchil2752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00004406_pilon:342036..343460- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGAGTGCTACGTGAACGGCCATTACAACGATGCATTTGCCGGATT
TGAGGGCAACCGCCCCGTGGAGCAAGTGGATCCGGAACTGTACGAGCTTC
TCGTCCGCGAGAAGCAGCGTCAGTACGAGGGAATCGAGCTGATCGCAAGT
GAGAACTTTACGTCTCGCGCTGTGATGGAGGTGTTGGGGTCGTCGTTGAC
CAACAAGTACTCGGAGGGTCTGCCCGGCGCTCGCTACTATGGTGGAAACG
AGGTGATCGATGACATTGAACGTCTGGTACAGAAACGCGCGTTGGAGTGC
TTTGGATTGGACGCTTCGGCGTGGGGTGTGAACGTGCAGCCGTACTCGGG
CTCCACCGCCAACTTTGCGCTGTACACGGGGGTGCTCAACCCGCACGACC
GCATCATGGGGCTTGATCTTCCGTCTGGCGGCCACCTCACGCACGGCTTT
TACACGGCGAAGAGGAAGATTTCGGCGACGAGTGTGTATTTTGAGTCGCT
TCCTTACAAGGTGGATGAGAAGAGCGGGTACATTGACTATGACAAGTTGG
AGGAAAGCGCGTTGACTTTTCGTCCCAAGTTGCTAATCTGCGGGGCCAGC
GCATACCCGCGCGACTGGGACTTTGAGCGTCTGCGACAGATTGCGAACAA
GAGCGGCGCTTTGCTGATGTGCGACATGGCTCACATCTCCGGTCTTGTGG
CGACAGGGCAGGCGTCGAGCCCGTTCAAGTTGTGTGACTTTGTGACGTCG
ACGACGCACAAGAGCCTGCGTGGGCCGCGTCAGGGGTTGATCTTCTACCG
TCGCGGGCCGATTCTGGACGCGGAAGGCAAGGATAGCGGCAAGGTGTACC
AGTGGGAGAACAAAGTGAACATGGCGGTGTTCCCGGGGTGCCAGGGCGGG
CCGCACAACAACACGATCGGGGCGCTTGCAGTGGCGTTGAAAGAGGCGAT
GAAGCCTGAATTCAAAGAGTATTGCAAGCAGACGTGCTCCAACGCGCGCG
TGCTCGGGGAGCAGTTGGTAAAGATGGGCTACTCGCTGGTGACGGGCGGG
ACGGAGAACCACCTGGTGCTGTGGGACTTGCGTCCGCAGGGCATTGGTGG
CTCCAAGGTGGAGAAGGTGTGCGATGTGGCGCACATCACGCTGAATAAGA
ACGCGGTGGCCGGGGACACTTCGGCGCTCAACCCCGGGGGGGTGCGCATT
GGGGCGCCGGCGATGACGTCGCGGGGGCTAGTAGAAAAGGACTTTGTGCA
GGTTGCGGCGTTCCTGGACCGGGCCGTGACGCTGGCGCTGAGCATCCAGA
AGGAGGTTGGGTCGAAGATGAAGGAGTTTGGGCCGGCGGCCGAGAAGGAC
GCGGGGGTGAAGGCGCTTCGCGAGGAGGTGATTGAGTTTTCTAAGGCTTT
CCCGATGCCAGGCGGGGTGCTCTGA
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