Gchil2713.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2713.t1
Unique NameGchil2713.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:516883..518227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue6.11e-18
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2713Gchil2713Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 516883..518227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2713.t1Gchil2713.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 516883..518227 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2713.t1.stop1Gchil2713.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 516883..516885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2713.t1.CDS1Gchil2713.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 516883..518032 -
Gchil2713.t1.CDS2Gchil2713.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 518142..518227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2713.t1.exon1Gchil2713.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 516883..518032 -
Gchil2713.t1.exon2Gchil2713.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 518142..518227 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2713.t1.intron1Gchil2713.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000165_pilon 518033..518141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2713.t1.start1Gchil2713.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 518225..518227 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2713.t1 ID=Gchil2713.t1|Name=Gchil2713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MSMTKLATTLATTLATMLASLLALANGHSFLTVPMPISTVETCRVGGNPG
WLAFCGGPCPDFNFRYDMRPEHPAAEWQRGSEQTIHYSKNNHDGGFVRLS
LVPLDERMRREAHDALAFHYGCWSEGEFSCKRTEQHRDCGFDRDNLAYRV
SVVVPTTHPDGVYVLGWAWYGGGTVTSDFGDYYDCAFVHIRGGPLTDTFS
ATFRGNAAVRTPSNVPGCVAAVDRLGVCRTEPCFEHDGKKFDAAARVPVQ
FSTRDSAPIVYREWLEHALRRDSNRVRAAAAASAWDGPFGVWGVAVYDTG
NEKRVEMGDVSDATGRAALVDVSGRGGVTLAVDTFGHVERVEWVINGRLE
ATRTTAPFAIGGQETRGDGGTNFYDWPFPVEGQRVFVTAIAHSNASARYF
STDLHFERRWR*
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spliced messenger RNA

>Gchil2713.t1 ID=Gchil2713.t1|Name=Gchil2713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000165_pilon:516883..518227- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATGACGAAGCTGGCGACGACGCTGGCGACGACGCTGGCGACGAT
GCTGGCGTCGCTCCTGGCGCTTGCCAACGGCCACAGCTTCCTCACGGTGC
CGATGCCCATCTCGACGGTGGAGACGTGCCGCGTGGGCGGCAACCCGGGT
TGGCTTGCCTTTTGCGGCGGTCCGTGTCCGGATTTCAACTTTCGCTATGA
CATGCGTCCCGAACACCCCGCCGCCGAGTGGCAGCGCGGTAGTGAGCAAA
CCATTCACTACTCGAAGAACAATCACGACGGCGGTTTCGTGCGTCTCTCT
CTGGTGCCGTTGGACGAACGTATGCGACGTGAGGCACACGACGCGCTGGC
GTTTCACTACGGGTGTTGGTCGGAGGGTGAGTTTTCATGCAAGCGCACCG
AACAACATCGCGACTGCGGCTTTGACCGCGACAATCTGGCGTATCGCGTG
AGCGTCGTCGTTCCAACCACGCACCCGGACGGCGTGTACGTGCTGGGGTG
GGCGTGGTATGGGGGCGGCACGGTAACCAGCGACTTTGGTGACTATTACG
ACTGCGCCTTTGTTCACATTCGCGGCGGTCCCTTAACCGACACGTTCAGC
GCAACGTTTCGCGGCAACGCCGCCGTACGCACGCCGTCCAACGTGCCCGG
CTGCGTGGCGGCCGTCGATCGTCTAGGCGTCTGTCGCACGGAACCGTGCT
TTGAGCACGACGGCAAAAAGTTTGACGCCGCCGCTCGAGTACCCGTGCAG
TTCAGCACGCGCGACTCGGCGCCAATTGTATATCGCGAGTGGCTTGAACA
CGCGTTACGTCGCGATTCCAACCGCGTGCGCGCAGCAGCGGCGGCGTCGG
CGTGGGACGGGCCGTTTGGTGTGTGGGGCGTGGCGGTGTACGACACGGGC
AACGAGAAACGCGTGGAGATGGGCGATGTGAGCGATGCGACGGGACGCGC
GGCGCTGGTGGATGTGTCCGGACGCGGCGGTGTTACGCTGGCGGTGGATA
CGTTTGGACATGTGGAGCGCGTGGAGTGGGTGATCAATGGTCGTTTGGAA
GCGACGCGCACGACGGCGCCGTTTGCTATTGGCGGGCAAGAGACGCGGGG
GGACGGAGGGACCAACTTTTACGACTGGCCGTTCCCCGTGGAGGGGCAGC
GCGTGTTTGTGACGGCCATTGCGCACTCCAACGCGTCGGCGCGGTACTTT
TCCACCGACTTGCACTTTGAGCGTCGCTGGCGATGA
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protein sequence of Gchil2713.t1

>Gchil2713.t1 ID=Gchil2713.t1|Name=Gchil2713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MSMTKLATTLATTLATMLASLLALANGHSFLTVPMPISTVETCRVGGNPG
WLAFCGGPCPDFNFRYDMRPEHPAAEWQRGSEQTIHYSKNNHDGGFVRLS
LVPLDERMRREAHDALAFHYGCWSEGEFSCKRTEQHRDCGFDRDNLAYRV
SVVVPTTHPDGVYVLGWAWYGGGTVTSDFGDYYDCAFVHIRGGPLTDTFS
ATFRGNAAVRTPSNVPGCVAAVDRLGVCRTEPCFEHDGKKFDAAARVPVQ
FSTRDSAPIVYREWLEHALRRDSNRVRAAAAASAWDGPFGVWGVAVYDTG
NEKRVEMGDVSDATGRAALVDVSGRGGVTLAVDTFGHVERVEWVINGRLE
ATRTTAPFAIGGQETRGDGGTNFYDWPFPVEGQRVFVTAIAHSNASARYF
STDLHFERRWR*
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mRNA from alignment at tig00000165_pilon:516883..518227-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2713.t1 ID=Gchil2713.t1|Name=Gchil2713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1345bp|location=Sequence derived from alignment at tig00000165_pilon:516883..518227- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCATGACGAAGCTGGCGACGACGCTGGCGACGACGCTGGCGACGAT
GCTGGCGTCGCTCCTGGCGCTTGCCAACGGCCACAGGTACGTGAGTGAGT
GAGAGAGAGTGTGTGCGTGCTTGCGACACCGACACCCCCACGCACTGATT
GCTGACTCTCCCCCTCCGCGTGCGTGTCGTGTCTGCGCGAAACAGCTTCC
TCACGGTGCCGATGCCCATCTCGACGGTGGAGACGTGCCGCGTGGGCGGC
AACCCGGGTTGGCTTGCCTTTTGCGGCGGTCCGTGTCCGGATTTCAACTT
TCGCTATGACATGCGTCCCGAACACCCCGCCGCCGAGTGGCAGCGCGGTA
GTGAGCAAACCATTCACTACTCGAAGAACAATCACGACGGCGGTTTCGTG
CGTCTCTCTCTGGTGCCGTTGGACGAACGTATGCGACGTGAGGCACACGA
CGCGCTGGCGTTTCACTACGGGTGTTGGTCGGAGGGTGAGTTTTCATGCA
AGCGCACCGAACAACATCGCGACTGCGGCTTTGACCGCGACAATCTGGCG
TATCGCGTGAGCGTCGTCGTTCCAACCACGCACCCGGACGGCGTGTACGT
GCTGGGGTGGGCGTGGTATGGGGGCGGCACGGTAACCAGCGACTTTGGTG
ACTATTACGACTGCGCCTTTGTTCACATTCGCGGCGGTCCCTTAACCGAC
ACGTTCAGCGCAACGTTTCGCGGCAACGCCGCCGTACGCACGCCGTCCAA
CGTGCCCGGCTGCGTGGCGGCCGTCGATCGTCTAGGCGTCTGTCGCACGG
AACCGTGCTTTGAGCACGACGGCAAAAAGTTTGACGCCGCCGCTCGAGTA
CCCGTGCAGTTCAGCACGCGCGACTCGGCGCCAATTGTATATCGCGAGTG
GCTTGAACACGCGTTACGTCGCGATTCCAACCGCGTGCGCGCAGCAGCGG
CGGCGTCGGCGTGGGACGGGCCGTTTGGTGTGTGGGGCGTGGCGGTGTAC
GACACGGGCAACGAGAAACGCGTGGAGATGGGCGATGTGAGCGATGCGAC
GGGACGCGCGGCGCTGGTGGATGTGTCCGGACGCGGCGGTGTTACGCTGG
CGGTGGATACGTTTGGACATGTGGAGCGCGTGGAGTGGGTGATCAATGGT
CGTTTGGAAGCGACGCGCACGACGGCGCCGTTTGCTATTGGCGGGCAAGA
GACGCGGGGGGACGGAGGGACCAACTTTTACGACTGGCCGTTCCCCGTGG
AGGGGCAGCGCGTGTTTGTGACGGCCATTGCGCACTCCAACGCGTCGGCG
CGGTACTTTTCCACCGACTTGCACTTTGAGCGTCGCTGGCGATGA
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Coding sequence (CDS) from alignment at tig00000165_pilon:516883..518227-

>Gchil2713.t1 ID=Gchil2713.t1|Name=Gchil2713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000165_pilon:516883..518227- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCATGACGAAGCTGGCGACGACGCTGGCGACGACGCTGGCGACGAT
GCTGGCGTCGCTCCTGGCGCTTGCCAACGGCCACAGCTTCCTCACGGTGC
CGATGCCCATCTCGACGGTGGAGACGTGCCGCGTGGGCGGCAACCCGGGT
TGGCTTGCCTTTTGCGGCGGTCCGTGTCCGGATTTCAACTTTCGCTATGA
CATGCGTCCCGAACACCCCGCCGCCGAGTGGCAGCGCGGTAGTGAGCAAA
CCATTCACTACTCGAAGAACAATCACGACGGCGGTTTCGTGCGTCTCTCT
CTGGTGCCGTTGGACGAACGTATGCGACGTGAGGCACACGACGCGCTGGC
GTTTCACTACGGGTGTTGGTCGGAGGGTGAGTTTTCATGCAAGCGCACCG
AACAACATCGCGACTGCGGCTTTGACCGCGACAATCTGGCGTATCGCGTG
AGCGTCGTCGTTCCAACCACGCACCCGGACGGCGTGTACGTGCTGGGGTG
GGCGTGGTATGGGGGCGGCACGGTAACCAGCGACTTTGGTGACTATTACG
ACTGCGCCTTTGTTCACATTCGCGGCGGTCCCTTAACCGACACGTTCAGC
GCAACGTTTCGCGGCAACGCCGCCGTACGCACGCCGTCCAACGTGCCCGG
CTGCGTGGCGGCCGTCGATCGTCTAGGCGTCTGTCGCACGGAACCGTGCT
TTGAGCACGACGGCAAAAAGTTTGACGCCGCCGCTCGAGTACCCGTGCAG
TTCAGCACGCGCGACTCGGCGCCAATTGTATATCGCGAGTGGCTTGAACA
CGCGTTACGTCGCGATTCCAACCGCGTGCGCGCAGCAGCGGCGGCGTCGG
CGTGGGACGGGCCGTTTGGTGTGTGGGGCGTGGCGGTGTACGACACGGGC
AACGAGAAACGCGTGGAGATGGGCGATGTGAGCGATGCGACGGGACGCGC
GGCGCTGGTGGATGTGTCCGGACGCGGCGGTGTTACGCTGGCGGTGGATA
CGTTTGGACATGTGGAGCGCGTGGAGTGGGTGATCAATGGTCGTTTGGAA
GCGACGCGCACGACGGCGCCGTTTGCTATTGGCGGGCAAGAGACGCGGGG
GGACGGAGGGACCAACTTTTACGACTGGCCGTTCCCCGTGGAGGGGCAGC
GCGTGTTTGTGACGGCCATTGCGCACTCCAACGCGTCGGCGCGGTACTTT
TCCACCGACTTGCACTTTGAGCGTCGCTGGCGATGA
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