Gchil2711.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2711.t1
Unique Name	Gchil2711.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000165_pilon	contig	tig00000165_pilon:506413..507282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	583355.Caka_0059
PFAMs	Big_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl	2\|Bacteria
KEGG ko	ko:K20846
Evalue	8.16e-41
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria
EC	3.2.1.83
Description	xyloglucan:xyloglucosyl transferase activity
COG category	G
CAZy	GH16
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2711	Gchil2711	Gracilaria chilensis NLEC103_M9 male	gene	tig00000165_pilon 506413..507282 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2711.t1.start1	Gchil2711.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000165_pilon 506413..506415 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2711.t1.CDS1	Gchil2711.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000165_pilon 506413..507282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2711.t1.exon1	Gchil2711.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000165_pilon 506413..507282 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2711.t1.stop1	Gchil2711.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000165_pilon 507280..507282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2711.t1	Gchil2711.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000165_pilon 506413..507282 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000165_pilon:506413..507282+
coding sequence from alignment at tig00000165_pilon:506413..507282+

mRNA sequence

>Gchil2711.t1 ID=Gchil2711.t1|Name=Gchil2711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=290bp
MTVPKNVPPLPYDPSTTDPNAPLPYYLQAEVPQNMKWVKDWNMSDEFNAY
PQSSWYGSSKWVRHNPLWLGREPSYFSKNNVYLRDGSLWLESREERPSQQ
YLNENRGRPVGNNRRFSTGFIRTAEKRKYGYFEISCKLMDCPVSCAFWFI
NHRDTEIDVFEYSTSEKVPDIWDRSSVPFKRKFNTNTLIYSGPGGRDVRS
NPLKFDIGRDLSKEKIKVGLLWKPDVLVWYLNDREIRRERNYHFHIPLFL
QLDSEVFPNWFGEPGEYGAKKLPNAWQIYYVRSYQMARI*

spliced messenger RNA

>Gchil2711.t1 ID=Gchil2711.t1|Name=Gchil2711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000165_pilon:506413..507282+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTTCCAAAGAATGTACCCCCACTTCCATACGATCCGTCCACAAC
CGATCCGAACGCTCCGCTGCCCTACTACCTCCAGGCAGAAGTACCGCAAA
ACATGAAGTGGGTAAAGGACTGGAACATGTCTGATGAATTCAATGCCTAC
CCGCAAAGTTCCTGGTACGGTTCTTCCAAATGGGTGCGACACAATCCTCT
CTGGCTAGGACGAGAGCCCAGTTATTTCAGCAAGAACAACGTCTACCTTC
GTGACGGGTCGCTCTGGTTAGAGAGTCGTGAAGAACGACCATCTCAGCAA
TATCTCAATGAGAATCGTGGACGTCCCGTTGGCAACAATCGTCGCTTTTC
TACCGGGTTCATTCGAACAGCCGAAAAACGTAAATACGGATACTTTGAGA
TTTCTTGCAAGCTCATGGATTGTCCTGTGAGCTGTGCTTTCTGGTTCATC
AATCATCGTGACACGGAGATTGATGTGTTCGAATATTCTACCAGTGAGAA
GGTACCCGACATTTGGGACCGATCCAGCGTACCGTTCAAGCGCAAGTTCA
ACACCAATACGTTGATATACTCTGGACCCGGCGGTCGCGATGTTCGATCC
AATCCGCTCAAGTTTGACATTGGTCGCGATCTGAGTAAGGAAAAAATTAA
GGTGGGACTTTTATGGAAGCCTGACGTGCTTGTCTGGTACCTGAATGACC
GTGAGATTCGTAGAGAGCGGAATTATCACTTTCATATTCCGCTGTTTTTA
CAGCTTGATTCGGAGGTTTTCCCCAACTGGTTCGGGGAGCCAGGAGAATA
TGGTGCCAAGAAGTTGCCAAATGCGTGGCAGATTTATTATGTTCGTAGCT
ACCAGATGGCTCGTATCTAG

protein sequence of Gchil2711.t1

>Gchil2711.t1 ID=Gchil2711.t1|Name=Gchil2711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=290bp
MTVPKNVPPLPYDPSTTDPNAPLPYYLQAEVPQNMKWVKDWNMSDEFNAY
PQSSWYGSSKWVRHNPLWLGREPSYFSKNNVYLRDGSLWLESREERPSQQ
YLNENRGRPVGNNRRFSTGFIRTAEKRKYGYFEISCKLMDCPVSCAFWFI
NHRDTEIDVFEYSTSEKVPDIWDRSSVPFKRKFNTNTLIYSGPGGRDVRS
NPLKFDIGRDLSKEKIKVGLLWKPDVLVWYLNDREIRRERNYHFHIPLFL
QLDSEVFPNWFGEPGEYGAKKLPNAWQIYYVRSYQMARI*

mRNA from alignment at tig00000165_pilon:506413..507282+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2711.t1 ID=Gchil2711.t1|Name=Gchil2711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000165_pilon:506413..507282+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGTTCCAAAGAATGTACCCCCACTTCCATACGATCCGTCCACAAC
CGATCCGAACGCTCCGCTGCCCTACTACCTCCAGGCAGAAGTACCGCAAA
ACATGAAGTGGGTAAAGGACTGGAACATGTCTGATGAATTCAATGCCTAC
CCGCAAAGTTCCTGGTACGGTTCTTCCAAATGGGTGCGACACAATCCTCT
CTGGCTAGGACGAGAGCCCAGTTATTTCAGCAAGAACAACGTCTACCTTC
GTGACGGGTCGCTCTGGTTAGAGAGTCGTGAAGAACGACCATCTCAGCAA
TATCTCAATGAGAATCGTGGACGTCCCGTTGGCAACAATCGTCGCTTTTC
TACCGGGTTCATTCGAACAGCCGAAAAACGTAAATACGGATACTTTGAGA
TTTCTTGCAAGCTCATGGATTGTCCTGTGAGCTGTGCTTTCTGGTTCATC
AATCATCGTGACACGGAGATTGATGTGTTCGAATATTCTACCAGTGAGAA
GGTACCCGACATTTGGGACCGATCCAGCGTACCGTTCAAGCGCAAGTTCA
ACACCAATACGTTGATATACTCTGGACCCGGCGGTCGCGATGTTCGATCC
AATCCGCTCAAGTTTGACATTGGTCGCGATCTGAGTAAGGAAAAAATTAA
GGTGGGACTTTTATGGAAGCCTGACGTGCTTGTCTGGTACCTGAATGACC
GTGAGATTCGTAGAGAGCGGAATTATCACTTTCATATTCCGCTGTTTTTA
CAGCTTGATTCGGAGGTTTTCCCCAACTGGTTCGGGGAGCCAGGAGAATA
TGGTGCCAAGAAGTTGCCAAATGCGTGGCAGATTTATTATGTTCGTAGCT
ACCAGATGGCTCGTATCTAG

Coding sequence (CDS) from alignment at tig00000165_pilon:506413..507282+

>Gchil2711.t1 ID=Gchil2711.t1|Name=Gchil2711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000165_pilon:506413..507282+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGTTCCAAAGAATGTACCCCCACTTCCATACGATCCGTCCACAAC
CGATCCGAACGCTCCGCTGCCCTACTACCTCCAGGCAGAAGTACCGCAAA
ACATGAAGTGGGTAAAGGACTGGAACATGTCTGATGAATTCAATGCCTAC
CCGCAAAGTTCCTGGTACGGTTCTTCCAAATGGGTGCGACACAATCCTCT
CTGGCTAGGACGAGAGCCCAGTTATTTCAGCAAGAACAACGTCTACCTTC
GTGACGGGTCGCTCTGGTTAGAGAGTCGTGAAGAACGACCATCTCAGCAA
TATCTCAATGAGAATCGTGGACGTCCCGTTGGCAACAATCGTCGCTTTTC
TACCGGGTTCATTCGAACAGCCGAAAAACGTAAATACGGATACTTTGAGA
TTTCTTGCAAGCTCATGGATTGTCCTGTGAGCTGTGCTTTCTGGTTCATC
AATCATCGTGACACGGAGATTGATGTGTTCGAATATTCTACCAGTGAGAA
GGTACCCGACATTTGGGACCGATCCAGCGTACCGTTCAAGCGCAAGTTCA
ACACCAATACGTTGATATACTCTGGACCCGGCGGTCGCGATGTTCGATCC
AATCCGCTCAAGTTTGACATTGGTCGCGATCTGAGTAAGGAAAAAATTAA
GGTGGGACTTTTATGGAAGCCTGACGTGCTTGTCTGGTACCTGAATGACC
GTGAGATTCGTAGAGAGCGGAATTATCACTTTCATATTCCGCTGTTTTTA
CAGCTTGATTCGGAGGTTTTCCCCAACTGGTTCGGGGAGCCAGGAGAATA
TGGTGCCAAGAAGTTGCCAAATGCGTGGCAGATTTATTATGTTCGTAGCT
ACCAGATGGCTCGTATCTAG