Gchil2709.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2709.t1
Unique NameGchil2709.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:452369..453133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog58103.CAPSD_LRVLG
Max annot lvl10239|Viruses
Evalue6.38e-10
EggNOG OGs4QC61@10239|Viruses,4R0WV@35325|dsRNA viruses
DescriptionTotivirus coat protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2709Gchil2709Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 452369..453133 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2709.t1.start1Gchil2709.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 452369..452371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2709.t1.CDS1Gchil2709.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 452369..453133 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2709.t1.exon1Gchil2709.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 452369..453133 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2709.t1.stop1Gchil2709.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 453131..453133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2709.t1Gchil2709.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 452369..453133 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2709.t1 ID=Gchil2709.t1|Name=Gchil2709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=255bp
MYALSGCGAVGALAVTKGIHSIKTVVAHTDEGGYIRDVLRSGTFDRPYGG
VYVESVIGFTTFPVVCRSDKAGVQADGIALKPLQHLHLLTLSNHTEAGCI
QLLSQLVGLRRLGMQNDAELSEADNQRLRRRIMDASDTWCTNYVRIISNF
FTDDDGGVGRASEARRAMHGMAAQAAPANRHIAGRTLTLFYWVEPTTLFS
HLDNSVATAHDYGVLAGFYERTESDPYPKLQMLVESPLYKAVAYEHRSAR
TVPV*
back to top

spliced messenger RNA

>Gchil2709.t1 ID=Gchil2709.t1|Name=Gchil2709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000165_pilon:452369..453133+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCGTTGAGTGGATGCGGTGCCGTGGGTGCACTGGCCGTCACGAA
GGGCATTCACAGTATTAAAACTGTGGTTGCCCACACTGACGAGGGTGGCT
ACATCCGCGACGTATTGCGGAGCGGCACGTTTGATCGCCCCTACGGAGGC
GTCTACGTGGAATCTGTCATCGGGTTCACTACCTTCCCAGTAGTGTGCCG
CAGTGACAAGGCGGGAGTGCAGGCAGATGGCATTGCACTTAAACCACTGC
AACATCTGCACTTGCTGACCCTCTCCAATCATACGGAGGCAGGATGTATC
CAACTCTTGTCTCAATTGGTAGGGCTACGGAGGCTGGGCATGCAAAATGA
TGCCGAGCTTTCAGAAGCGGACAACCAGCGTTTGCGCCGCCGTATAATGG
ACGCCAGTGATACCTGGTGCACCAATTATGTCCGCATCATCAGTAACTTC
TTTACTGATGATGATGGAGGGGTCGGGCGCGCGTCTGAGGCCCGCAGAGC
CATGCATGGCATGGCCGCGCAAGCTGCGCCCGCCAACCGGCACATAGCCG
GTAGAACGCTCACCCTATTCTACTGGGTCGAGCCCACCACGTTGTTCTCA
CACTTGGACAACTCTGTGGCCACTGCTCATGACTACGGCGTCTTAGCTGG
GTTTTACGAGCGTACGGAGTCGGATCCGTACCCCAAGCTGCAAATGCTTG
TGGAGTCCCCGCTCTACAAAGCTGTGGCTTATGAGCACCGTTCTGCAAGG
ACGGTCCCCGtatga
back to top

protein sequence of Gchil2709.t1

>Gchil2709.t1 ID=Gchil2709.t1|Name=Gchil2709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=255bp
MYALSGCGAVGALAVTKGIHSIKTVVAHTDEGGYIRDVLRSGTFDRPYGG
VYVESVIGFTTFPVVCRSDKAGVQADGIALKPLQHLHLLTLSNHTEAGCI
QLLSQLVGLRRLGMQNDAELSEADNQRLRRRIMDASDTWCTNYVRIISNF
FTDDDGGVGRASEARRAMHGMAAQAAPANRHIAGRTLTLFYWVEPTTLFS
HLDNSVATAHDYGVLAGFYERTESDPYPKLQMLVESPLYKAVAYEHRSAR
TVPV*
back to top

mRNA from alignment at tig00000165_pilon:452369..453133+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2709.t1 ID=Gchil2709.t1|Name=Gchil2709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000165_pilon:452369..453133+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACGCGTTGAGTGGATGCGGTGCCGTGGGTGCACTGGCCGTCACGAA
GGGCATTCACAGTATTAAAACTGTGGTTGCCCACACTGACGAGGGTGGCT
ACATCCGCGACGTATTGCGGAGCGGCACGTTTGATCGCCCCTACGGAGGC
GTCTACGTGGAATCTGTCATCGGGTTCACTACCTTCCCAGTAGTGTGCCG
CAGTGACAAGGCGGGAGTGCAGGCAGATGGCATTGCACTTAAACCACTGC
AACATCTGCACTTGCTGACCCTCTCCAATCATACGGAGGCAGGATGTATC
CAACTCTTGTCTCAATTGGTAGGGCTACGGAGGCTGGGCATGCAAAATGA
TGCCGAGCTTTCAGAAGCGGACAACCAGCGTTTGCGCCGCCGTATAATGG
ACGCCAGTGATACCTGGTGCACCAATTATGTCCGCATCATCAGTAACTTC
TTTACTGATGATGATGGAGGGGTCGGGCGCGCGTCTGAGGCCCGCAGAGC
CATGCATGGCATGGCCGCGCAAGCTGCGCCCGCCAACCGGCACATAGCCG
GTAGAACGCTCACCCTATTCTACTGGGTCGAGCCCACCACGTTGTTCTCA
CACTTGGACAACTCTGTGGCCACTGCTCATGACTACGGCGTCTTAGCTGG
GTTTTACGAGCGTACGGAGTCGGATCCGTACCCCAAGCTGCAAATGCTTG
TGGAGTCCCCGCTCTACAAAGCTGTGGCTTATGAGCACCGTTCTGCAAGG
ACGGTCCCCGtatga
back to top

Coding sequence (CDS) from alignment at tig00000165_pilon:452369..453133+

>Gchil2709.t1 ID=Gchil2709.t1|Name=Gchil2709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000165_pilon:452369..453133+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACGCGTTGAGTGGATGCGGTGCCGTGGGTGCACTGGCCGTCACGAA
GGGCATTCACAGTATTAAAACTGTGGTTGCCCACACTGACGAGGGTGGCT
ACATCCGCGACGTATTGCGGAGCGGCACGTTTGATCGCCCCTACGGAGGC
GTCTACGTGGAATCTGTCATCGGGTTCACTACCTTCCCAGTAGTGTGCCG
CAGTGACAAGGCGGGAGTGCAGGCAGATGGCATTGCACTTAAACCACTGC
AACATCTGCACTTGCTGACCCTCTCCAATCATACGGAGGCAGGATGTATC
CAACTCTTGTCTCAATTGGTAGGGCTACGGAGGCTGGGCATGCAAAATGA
TGCCGAGCTTTCAGAAGCGGACAACCAGCGTTTGCGCCGCCGTATAATGG
ACGCCAGTGATACCTGGTGCACCAATTATGTCCGCATCATCAGTAACTTC
TTTACTGATGATGATGGAGGGGTCGGGCGCGCGTCTGAGGCCCGCAGAGC
CATGCATGGCATGGCCGCGCAAGCTGCGCCCGCCAACCGGCACATAGCCG
GTAGAACGCTCACCCTATTCTACTGGGTCGAGCCCACCACGTTGTTCTCA
CACTTGGACAACTCTGTGGCCACTGCTCATGACTACGGCGTCTTAGCTGG
GTTTTACGAGCGTACGGAGTCGGATCCGTACCCCAAGCTGCAAATGCTTG
TGGAGTCCCCGCTCTACAAAGCTGTGGCTTATGAGCACCGTTCTGCAAGG
ACGGTCCCCGtatga
back to top