Gchil2706.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2706.t1
Unique NameGchil2706.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:438553..439884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2706Gchil2706Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 438553..439884 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2706.t1.stop1Gchil2706.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 438553..438555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2706.t1.CDS1Gchil2706.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 438553..439884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2706.t1.exon1Gchil2706.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 438553..439884 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2706.t1.start1Gchil2706.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 439882..439884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2706.t1Gchil2706.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 438553..439884 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2706.t1 ID=Gchil2706.t1|Name=Gchil2706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=444bp
MPSTTLYLSFEVGNLVVWLWLEVLALAAVIVWTTDSAKIYVSIYWKRSKT
LRLRAKRTLIDFIPMNGDLRVVPQVPKLIITLARITVTILVAVSALGIDQ
GLVYTRYAPTTHVISATDAQFSGRSYDGRRENSRQDFAVAACEDVNVISL
VKFKGFVSGNRFSCESSINVGEKEKVVEVIWDHDTVQQISDGQALQVNIA
LGERSALSEGLSNDTFVVLEDSTGAPVHMSVVRRKMRNTTFGTCDRAGNN
AAATLHGEFLVFSNDIDEVGEIEDELVTVAYAICNHSSTVSLRATDEMIA
LPFINAQQQMILARNVANSLLSIVPDSSQKLYFGDTRRVTIIKKKFNYLI
LGLAISNVALLVLCKILKHCVKRDVHVDPFSSISMFWLGRDYGREDGSCN
RPVSQDILIQGRSSSKGVQICAVEADKSGTDTFSVPSSTDEEV*
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spliced messenger RNA

>Gchil2706.t1 ID=Gchil2706.t1|Name=Gchil2706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000165_pilon:438553..439884- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCAACCACTTTGTACTTGTCTTTCGAGGTGGGAAATCTTGTCGT
CTGGCTATGGCTTGAGGTGCTTGCCCTGGCCGCTGTTATTGTTTGGACCA
CTGACTCGGCAAAAATATACGTGTCCATCTACTGGAAACGATCGAAAACT
CTTCGTTTACGAGCCAAACGCACTCTAATCGATTTTATTCCAATGAACGG
TGACCTTCGCGTTGTACCACAAGTACCGAAGCTCATTATTACCCTTGCTC
GCATCACAGTAACGATTCTGGTGGCAGTTAGTGCCTTGGGAATCGATCAA
GGTCTCGTGTATACTCGCTACGCACCGACCACACACGTTATCTCAGCCAC
AGATGCGCAGTTTTCTGGCAGAAGCTATGATGGAAGAAGAGAAAATTCCA
GACAGGATTTCGCCGTGGCTGCTTGTGAAGATGTGAATGTTATTTCACTG
GTCAAGTTCAAGGGCTTCGTTTCTGGCAATCGTTTCAGTTGTGAATCTTC
CATTAATGTTGGAGAGAAGGAGAAGGTGGTTGAGGTGATATGGGACCACG
ATACAGTGCAGCAAATTTCCGATGGCCAAGCTCTGCAGGTTAACATTGCC
CTGGGAGAACGATCTGCTTTGTCTGAAGGACTTTCTAATGACACCTTTGT
TGTGTTGGAAGATTCGACTGGCGCGCCGGTTCACATGAGCGTCGTGCGAC
GAAAAATGAGAAACACCACTTTTGGTACATGTGATAGAGCTGGTAATAAT
GCAGCCGCTACTTTACATGGGGAATTTTTAGTTTTCTCAAATGATATTGA
TGAAGTGGGTGAGATAGAAGACGAACTTGTTACCGTGGCGTACGCGATCT
GCAATCATTCTTCCACCGTTTCACTTCGTGCTACTGATGAAATGATAGCT
CTTCCATTCATCAACGCCCAACAACAGATGATTCTCGCTCGAAATGTGGC
AAACAGTTTGCTGTCAATTGTACCAGATTCTTCGCAGAAATTGTACTTTG
GAGACACTAGAAGAGTGACAATCATCAAGAAAAAGTTCAATTATCTCATA
CTTGGCTTGGCTATTTCTAATGTTGCGCTGTTGGTCCTGTGTAAGATTTT
GAAGCATTGCGTGAAAAGAGATGTCCATGTGGACCCGTTTTCTTCGATAT
CCATGTTTTGGCTTGGACGAGATTATGGGCGGGAAGACGGCTCATGTAAC
CGACCGGTATCACAGGACATTTTGATACAAGGAAGGAGTAGTAGCAAGGG
AGTGCAGATTTGTGCTGTTGAAGCGGATAAATCTGGTACTGACACTTTCA
GTGTACCGTCATCCACTGATGAAGAGGTATAA
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protein sequence of Gchil2706.t1

>Gchil2706.t1 ID=Gchil2706.t1|Name=Gchil2706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=444bp
MPSTTLYLSFEVGNLVVWLWLEVLALAAVIVWTTDSAKIYVSIYWKRSKT
LRLRAKRTLIDFIPMNGDLRVVPQVPKLIITLARITVTILVAVSALGIDQ
GLVYTRYAPTTHVISATDAQFSGRSYDGRRENSRQDFAVAACEDVNVISL
VKFKGFVSGNRFSCESSINVGEKEKVVEVIWDHDTVQQISDGQALQVNIA
LGERSALSEGLSNDTFVVLEDSTGAPVHMSVVRRKMRNTTFGTCDRAGNN
AAATLHGEFLVFSNDIDEVGEIEDELVTVAYAICNHSSTVSLRATDEMIA
LPFINAQQQMILARNVANSLLSIVPDSSQKLYFGDTRRVTIIKKKFNYLI
LGLAISNVALLVLCKILKHCVKRDVHVDPFSSISMFWLGRDYGREDGSCN
RPVSQDILIQGRSSSKGVQICAVEADKSGTDTFSVPSSTDEEV*
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mRNA from alignment at tig00000165_pilon:438553..439884-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2706.t1 ID=Gchil2706.t1|Name=Gchil2706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000165_pilon:438553..439884- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCAACCACTTTGTACTTGTCTTTCGAGGTGGGAAATCTTGTCGT
CTGGCTATGGCTTGAGGTGCTTGCCCTGGCCGCTGTTATTGTTTGGACCA
CTGACTCGGCAAAAATATACGTGTCCATCTACTGGAAACGATCGAAAACT
CTTCGTTTACGAGCCAAACGCACTCTAATCGATTTTATTCCAATGAACGG
TGACCTTCGCGTTGTACCACAAGTACCGAAGCTCATTATTACCCTTGCTC
GCATCACAGTAACGATTCTGGTGGCAGTTAGTGCCTTGGGAATCGATCAA
GGTCTCGTGTATACTCGCTACGCACCGACCACACACGTTATCTCAGCCAC
AGATGCGCAGTTTTCTGGCAGAAGCTATGATGGAAGAAGAGAAAATTCCA
GACAGGATTTCGCCGTGGCTGCTTGTGAAGATGTGAATGTTATTTCACTG
GTCAAGTTCAAGGGCTTCGTTTCTGGCAATCGTTTCAGTTGTGAATCTTC
CATTAATGTTGGAGAGAAGGAGAAGGTGGTTGAGGTGATATGGGACCACG
ATACAGTGCAGCAAATTTCCGATGGCCAAGCTCTGCAGGTTAACATTGCC
CTGGGAGAACGATCTGCTTTGTCTGAAGGACTTTCTAATGACACCTTTGT
TGTGTTGGAAGATTCGACTGGCGCGCCGGTTCACATGAGCGTCGTGCGAC
GAAAAATGAGAAACACCACTTTTGGTACATGTGATAGAGCTGGTAATAAT
GCAGCCGCTACTTTACATGGGGAATTTTTAGTTTTCTCAAATGATATTGA
TGAAGTGGGTGAGATAGAAGACGAACTTGTTACCGTGGCGTACGCGATCT
GCAATCATTCTTCCACCGTTTCACTTCGTGCTACTGATGAAATGATAGCT
CTTCCATTCATCAACGCCCAACAACAGATGATTCTCGCTCGAAATGTGGC
AAACAGTTTGCTGTCAATTGTACCAGATTCTTCGCAGAAATTGTACTTTG
GAGACACTAGAAGAGTGACAATCATCAAGAAAAAGTTCAATTATCTCATA
CTTGGCTTGGCTATTTCTAATGTTGCGCTGTTGGTCCTGTGTAAGATTTT
GAAGCATTGCGTGAAAAGAGATGTCCATGTGGACCCGTTTTCTTCGATAT
CCATGTTTTGGCTTGGACGAGATTATGGGCGGGAAGACGGCTCATGTAAC
CGACCGGTATCACAGGACATTTTGATACAAGGAAGGAGTAGTAGCAAGGG
AGTGCAGATTTGTGCTGTTGAAGCGGATAAATCTGGTACTGACACTTTCA
GTGTACCGTCATCCACTGATGAAGAGGTATAA
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Coding sequence (CDS) from alignment at tig00000165_pilon:438553..439884-

>Gchil2706.t1 ID=Gchil2706.t1|Name=Gchil2706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000165_pilon:438553..439884- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCAACCACTTTGTACTTGTCTTTCGAGGTGGGAAATCTTGTCGT
CTGGCTATGGCTTGAGGTGCTTGCCCTGGCCGCTGTTATTGTTTGGACCA
CTGACTCGGCAAAAATATACGTGTCCATCTACTGGAAACGATCGAAAACT
CTTCGTTTACGAGCCAAACGCACTCTAATCGATTTTATTCCAATGAACGG
TGACCTTCGCGTTGTACCACAAGTACCGAAGCTCATTATTACCCTTGCTC
GCATCACAGTAACGATTCTGGTGGCAGTTAGTGCCTTGGGAATCGATCAA
GGTCTCGTGTATACTCGCTACGCACCGACCACACACGTTATCTCAGCCAC
AGATGCGCAGTTTTCTGGCAGAAGCTATGATGGAAGAAGAGAAAATTCCA
GACAGGATTTCGCCGTGGCTGCTTGTGAAGATGTGAATGTTATTTCACTG
GTCAAGTTCAAGGGCTTCGTTTCTGGCAATCGTTTCAGTTGTGAATCTTC
CATTAATGTTGGAGAGAAGGAGAAGGTGGTTGAGGTGATATGGGACCACG
ATACAGTGCAGCAAATTTCCGATGGCCAAGCTCTGCAGGTTAACATTGCC
CTGGGAGAACGATCTGCTTTGTCTGAAGGACTTTCTAATGACACCTTTGT
TGTGTTGGAAGATTCGACTGGCGCGCCGGTTCACATGAGCGTCGTGCGAC
GAAAAATGAGAAACACCACTTTTGGTACATGTGATAGAGCTGGTAATAAT
GCAGCCGCTACTTTACATGGGGAATTTTTAGTTTTCTCAAATGATATTGA
TGAAGTGGGTGAGATAGAAGACGAACTTGTTACCGTGGCGTACGCGATCT
GCAATCATTCTTCCACCGTTTCACTTCGTGCTACTGATGAAATGATAGCT
CTTCCATTCATCAACGCCCAACAACAGATGATTCTCGCTCGAAATGTGGC
AAACAGTTTGCTGTCAATTGTACCAGATTCTTCGCAGAAATTGTACTTTG
GAGACACTAGAAGAGTGACAATCATCAAGAAAAAGTTCAATTATCTCATA
CTTGGCTTGGCTATTTCTAATGTTGCGCTGTTGGTCCTGTGTAAGATTTT
GAAGCATTGCGTGAAAAGAGATGTCCATGTGGACCCGTTTTCTTCGATAT
CCATGTTTTGGCTTGGACGAGATTATGGGCGGGAAGACGGCTCATGTAAC
CGACCGGTATCACAGGACATTTTGATACAAGGAAGGAGTAGTAGCAAGGG
AGTGCAGATTTGTGCTGTTGAAGCGGATAAATCTGGTACTGACACTTTCA
GTGTACCGTCATCCACTGATGAAGAGGTATAA
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