Gchil2705.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2705.t1
Unique NameGchil2705.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:393063..393929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP165CT
PFAMsSNARE_assoc
Max annot lvl2759|Eukaryota
Evalue1.69e-54
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2705Gchil2705Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 393063..393929 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2705.t1.stop1Gchil2705.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 393063..393065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2705.t1.CDS1Gchil2705.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 393063..393929 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2705.t1.exon1Gchil2705.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 393063..393929 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2705.t1.start1Gchil2705.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 393927..393929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2705.t1Gchil2705.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 393063..393929 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2705.t1 ID=Gchil2705.t1|Name=Gchil2705.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=289bp
MSSERSGETPPSRCDTPRYGSSDPQQAPPSTPLPSSSANDSDTHPPSTTA
ADGMDSRLLAAGIFLVTFLVLGSVAAATGLLSPDTLLQIARWFEQLGPNA
IYLYGVLYFVLELIAVPALPLTLGSGYLFGLLDGTVTVSIASTVAATVSF
LIARYGLRASVSRLAERNARFRVFDRAIGREGLKFVLLLRLSPLFPFAIS
NYLYGLTSVKLSDYVVGSWVGMLPGTIAYVSAGAAVNALTDLHDGQSSIS
PWLVLTGLVATVAVLTTIGNIAREAIESVDDDEIPQHH*
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spliced messenger RNA

>Gchil2705.t1 ID=Gchil2705.t1|Name=Gchil2705.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000165_pilon:393063..393929- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCGAGCGATCCGGCGAAACACCACCATCGCGGTGTGATACCCC
GAGATATGGAAGTTCAGACCCTCAACAAGCCCCACCTTCAACTCCTCTTC
CTTCATCCTCCGCAAATGACTCTGATACACACCCACCCTCGACGACTGCC
GCAGACGGAATGGATTCACGGCTACTGGCTGCCGGCATTTTTCTCGTGAC
TTTTCTCGTGTTGGGCAGCGTGGCAGCTGCCACTGGGCTACTAAGTCCAG
ATACTCTTTTGCAAATTGCACGCTGGTTTGAACAACTAGGTCCAAATGCC
ATCTACCTGTACGGCGTCCTTTACTTCGTGTTAGAGCTGATTGCTGTGCC
AGCGCTGCCGCTTACTCTTGGATCAGGCTATCTTTTCGGATTGCTAGACG
GCACTGTCACCGTTTCCATCGCATCAACGGTTGCGGCAACTGTGTCGTTT
CTAATTGCTCGCTATGGGCTCCGCGCCAGCGTCTCCAGGCTGGCCGAACG
CAATGCGCGCTTCCGTGTCTTTGATCGCGCCATCGGTCGAGAAGGACTCA
AGTTTGTTTTGTTGCTGCGCCTGTCGCCACTGTTTCCTTTTGCCATATCC
AATTACCTCTATGGTCTCACATCGGTGAAACTGAGTGATTACGTAGTGGG
GTCGTGGGTGGGAATGTTACCTGGTACGATTGCATATGTCAGTGCGGGTG
CCGCTGTCAATGCGCTTACCGACTTGCATGATGGTCAAAGCTCCATTAGT
CCATGGCTAGTGCTTACGGGGTTAGTTGCTACCGTTGCCGTTTTGACTAC
TATTGGAAATATCGCACGTGAAGCCATCGAGAGCGTTGACGATGATGAGA
TACCACAGCATCATTGA
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protein sequence of Gchil2705.t1

>Gchil2705.t1 ID=Gchil2705.t1|Name=Gchil2705.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=289bp
MSSERSGETPPSRCDTPRYGSSDPQQAPPSTPLPSSSANDSDTHPPSTTA
ADGMDSRLLAAGIFLVTFLVLGSVAAATGLLSPDTLLQIARWFEQLGPNA
IYLYGVLYFVLELIAVPALPLTLGSGYLFGLLDGTVTVSIASTVAATVSF
LIARYGLRASVSRLAERNARFRVFDRAIGREGLKFVLLLRLSPLFPFAIS
NYLYGLTSVKLSDYVVGSWVGMLPGTIAYVSAGAAVNALTDLHDGQSSIS
PWLVLTGLVATVAVLTTIGNIAREAIESVDDDEIPQHH*
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mRNA from alignment at tig00000165_pilon:393063..393929-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2705.t1 ID=Gchil2705.t1|Name=Gchil2705.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000165_pilon:393063..393929- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCGAGCGATCCGGCGAAACACCACCATCGCGGTGTGATACCCC
GAGATATGGAAGTTCAGACCCTCAACAAGCCCCACCTTCAACTCCTCTTC
CTTCATCCTCCGCAAATGACTCTGATACACACCCACCCTCGACGACTGCC
GCAGACGGAATGGATTCACGGCTACTGGCTGCCGGCATTTTTCTCGTGAC
TTTTCTCGTGTTGGGCAGCGTGGCAGCTGCCACTGGGCTACTAAGTCCAG
ATACTCTTTTGCAAATTGCACGCTGGTTTGAACAACTAGGTCCAAATGCC
ATCTACCTGTACGGCGTCCTTTACTTCGTGTTAGAGCTGATTGCTGTGCC
AGCGCTGCCGCTTACTCTTGGATCAGGCTATCTTTTCGGATTGCTAGACG
GCACTGTCACCGTTTCCATCGCATCAACGGTTGCGGCAACTGTGTCGTTT
CTAATTGCTCGCTATGGGCTCCGCGCCAGCGTCTCCAGGCTGGCCGAACG
CAATGCGCGCTTCCGTGTCTTTGATCGCGCCATCGGTCGAGAAGGACTCA
AGTTTGTTTTGTTGCTGCGCCTGTCGCCACTGTTTCCTTTTGCCATATCC
AATTACCTCTATGGTCTCACATCGGTGAAACTGAGTGATTACGTAGTGGG
GTCGTGGGTGGGAATGTTACCTGGTACGATTGCATATGTCAGTGCGGGTG
CCGCTGTCAATGCGCTTACCGACTTGCATGATGGTCAAAGCTCCATTAGT
CCATGGCTAGTGCTTACGGGGTTAGTTGCTACCGTTGCCGTTTTGACTAC
TATTGGAAATATCGCACGTGAAGCCATCGAGAGCGTTGACGATGATGAGA
TACCACAGCATCATTGA
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Coding sequence (CDS) from alignment at tig00000165_pilon:393063..393929-

>Gchil2705.t1 ID=Gchil2705.t1|Name=Gchil2705.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000165_pilon:393063..393929- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCGAGCGATCCGGCGAAACACCACCATCGCGGTGTGATACCCC
GAGATATGGAAGTTCAGACCCTCAACAAGCCCCACCTTCAACTCCTCTTC
CTTCATCCTCCGCAAATGACTCTGATACACACCCACCCTCGACGACTGCC
GCAGACGGAATGGATTCACGGCTACTGGCTGCCGGCATTTTTCTCGTGAC
TTTTCTCGTGTTGGGCAGCGTGGCAGCTGCCACTGGGCTACTAAGTCCAG
ATACTCTTTTGCAAATTGCACGCTGGTTTGAACAACTAGGTCCAAATGCC
ATCTACCTGTACGGCGTCCTTTACTTCGTGTTAGAGCTGATTGCTGTGCC
AGCGCTGCCGCTTACTCTTGGATCAGGCTATCTTTTCGGATTGCTAGACG
GCACTGTCACCGTTTCCATCGCATCAACGGTTGCGGCAACTGTGTCGTTT
CTAATTGCTCGCTATGGGCTCCGCGCCAGCGTCTCCAGGCTGGCCGAACG
CAATGCGCGCTTCCGTGTCTTTGATCGCGCCATCGGTCGAGAAGGACTCA
AGTTTGTTTTGTTGCTGCGCCTGTCGCCACTGTTTCCTTTTGCCATATCC
AATTACCTCTATGGTCTCACATCGGTGAAACTGAGTGATTACGTAGTGGG
GTCGTGGGTGGGAATGTTACCTGGTACGATTGCATATGTCAGTGCGGGTG
CCGCTGTCAATGCGCTTACCGACTTGCATGATGGTCAAAGCTCCATTAGT
CCATGGCTAGTGCTTACGGGGTTAGTTGCTACCGTTGCCGTTTTGACTAC
TATTGGAAATATCGCACGTGAAGCCATCGAGAGCGTTGACGATGATGAGA
TACCACAGCATCATTGA
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