Gchil2703.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2703.t1
Unique NameGchil2703.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:373282..374613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2703Gchil2703Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 373282..374613 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2703.t1.start1Gchil2703.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 373282..373284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2703.t1.CDS1Gchil2703.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 373282..374613 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2703.t1.exon1Gchil2703.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 373282..374613 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2703.t1.stop1Gchil2703.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 374611..374613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2703.t1Gchil2703.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 373282..374613 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2703.t1 ID=Gchil2703.t1|Name=Gchil2703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=444bp
MPSTTLYLSFEVGNLVVWLWLEVLALAAVIVWTTDSAKIYVSIYWKRSKT
LRLRAKRTLIDFIPMNGDLRVVPQVPKLIITLARITVTILVAVSALGIDQ
GLVYTRYAPTTHVISATDAQFSGRSYDGRRENSRQDFAVAACEDVNVISL
VKFKGFVSGNRFSCESSINVGEKEKVVEVIWDHDTVQQISDGQALQVNIA
LGERSALSEGLSNDTFVVLEDSTGAPVHMSVVRRKMRNTTFGTCDRAGNN
AAATLHGEFLVFSNDIDEVGEIEDELVTVAYAICNHSSTVSLRATDEMIA
LPFINAQQQMILARNVANSLLSIVPDSSQKLYFGDTRRVTIIKKKFNYLI
LGLAISNVGLLILCKILKHCVKRDVHVDPFSSISMFWLGRDYGREDGSCN
RPVSQDILIQGRSSSRGVQICAVEADKSGTDTFSVPSSTDEEV*
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spliced messenger RNA

>Gchil2703.t1 ID=Gchil2703.t1|Name=Gchil2703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000165_pilon:373282..374613+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgccgtcaaccactttgTACTTGTCTTTCGAAGTGGGCAATCTTGTCGT
CTGGCTATGGCTTGAGGTGCTTGCCCTGGCCGCTGTTATTGTTTGGACCA
CTGACTCGGCAAAAATATACGTGTCCATCTACTGGAAACGATCGAAAACT
CTTCGTTTACGAGCCAAACGCACTCTAATCGATTTTATTCCAATGAACGG
TGACCTTCGCGTTGTACCACAAGTACCGAAGCTCATTATTACCCTTGCTC
GCATCACAGTAACGATTCTGGTGGCAGTTAGTGCCTTGGGAATCGATCAA
GGTCTCGTGTATACTCGCTACGCGCCGACCACGCACGTTATCTCAGCCAC
CGATGCGCAGTTTTCTGGCAGAAGCTATGATGGAAGAAGAGAAAATTCCA
GACAGGATTTCGCCGTGGCTGCTTGTGAAGATGTGAATGTTATTTCACTG
GTCAAGTTCAAGGGCTTCGTTTCTGGCAATCGTTTCAGTTGTGAATCTTC
CATTAATGTTGGAGAGAAGGAGAAGGTGGTTGAGGTGATATGGGACCACG
ATACAGTGCAGCAAATTTCCGATGGCCAAGCTCTGCAGGTTAACATTGCC
CTGGGAGAACGATCTGCTTTGTCTGAAGGACTTTCTAATGACACCTTTGT
TGTGTTGGAAGATTCGACTGGCGCGCCGGTTCACATGAGCGTCGTGCGAC
GAAAAATGAGAAACACCACTTTTGGTACATGTGATAGAGCTGGTAATAAT
GCAGCCGCTACTTTACATGGGGAATTTTTAGTTTTCTCAAATGATATTGA
TGAAGTGGGTGAGATAGAAGACGAACTTGTTACCGTGGCGTACGCGATCT
GTAATCATTCTTCCACCGTTTCACTTCGTGCTACTGATGAAATGATAGCT
CTTCCATTCATCAACGCCCAACAACAGATGATTCTCGCTCGAAATGTGGC
AAACAGTTTGCTGTCAATTGTACCAGATTCTTCGCAGAAATTGTACTTTG
GAGACACTAGAAGAGTGACAATCATCAAGAAAAAGTTCAATTATCTCATA
CTTGGCTTGGCTATTTCTAATGTTGGGCTGTTGATCCTGTGTAAGATTTT
GAAGCATTGCGTGAAAAGAGATGTCCATGTGGACCCGTTTTCTTCGATAT
CCATGTTTTGGCTTGGACGAGATTATGGGCGGGAAGACGGCTCATGTAAC
CGACCGGTATCACAGGACATTTTGATACAAGGAAGGAGTAGTAGCAGGGG
GGTGCAGATTTGTGCGGTTGAAGCGGATAAATCTGGTACTGACACTTTCA
GTGTACCGTCATCCACTGATGAAGAGGTATAA
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protein sequence of Gchil2703.t1

>Gchil2703.t1 ID=Gchil2703.t1|Name=Gchil2703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=444bp
MPSTTLYLSFEVGNLVVWLWLEVLALAAVIVWTTDSAKIYVSIYWKRSKT
LRLRAKRTLIDFIPMNGDLRVVPQVPKLIITLARITVTILVAVSALGIDQ
GLVYTRYAPTTHVISATDAQFSGRSYDGRRENSRQDFAVAACEDVNVISL
VKFKGFVSGNRFSCESSINVGEKEKVVEVIWDHDTVQQISDGQALQVNIA
LGERSALSEGLSNDTFVVLEDSTGAPVHMSVVRRKMRNTTFGTCDRAGNN
AAATLHGEFLVFSNDIDEVGEIEDELVTVAYAICNHSSTVSLRATDEMIA
LPFINAQQQMILARNVANSLLSIVPDSSQKLYFGDTRRVTIIKKKFNYLI
LGLAISNVGLLILCKILKHCVKRDVHVDPFSSISMFWLGRDYGREDGSCN
RPVSQDILIQGRSSSRGVQICAVEADKSGTDTFSVPSSTDEEV*
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mRNA from alignment at tig00000165_pilon:373282..374613+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2703.t1 ID=Gchil2703.t1|Name=Gchil2703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000165_pilon:373282..374613+ (Gracilaria chilensis NLEC103_M9 male)
atgccgtcaaccactttgTACTTGTCTTTCGAAGTGGGCAATCTTGTCGT
CTGGCTATGGCTTGAGGTGCTTGCCCTGGCCGCTGTTATTGTTTGGACCA
CTGACTCGGCAAAAATATACGTGTCCATCTACTGGAAACGATCGAAAACT
CTTCGTTTACGAGCCAAACGCACTCTAATCGATTTTATTCCAATGAACGG
TGACCTTCGCGTTGTACCACAAGTACCGAAGCTCATTATTACCCTTGCTC
GCATCACAGTAACGATTCTGGTGGCAGTTAGTGCCTTGGGAATCGATCAA
GGTCTCGTGTATACTCGCTACGCGCCGACCACGCACGTTATCTCAGCCAC
CGATGCGCAGTTTTCTGGCAGAAGCTATGATGGAAGAAGAGAAAATTCCA
GACAGGATTTCGCCGTGGCTGCTTGTGAAGATGTGAATGTTATTTCACTG
GTCAAGTTCAAGGGCTTCGTTTCTGGCAATCGTTTCAGTTGTGAATCTTC
CATTAATGTTGGAGAGAAGGAGAAGGTGGTTGAGGTGATATGGGACCACG
ATACAGTGCAGCAAATTTCCGATGGCCAAGCTCTGCAGGTTAACATTGCC
CTGGGAGAACGATCTGCTTTGTCTGAAGGACTTTCTAATGACACCTTTGT
TGTGTTGGAAGATTCGACTGGCGCGCCGGTTCACATGAGCGTCGTGCGAC
GAAAAATGAGAAACACCACTTTTGGTACATGTGATAGAGCTGGTAATAAT
GCAGCCGCTACTTTACATGGGGAATTTTTAGTTTTCTCAAATGATATTGA
TGAAGTGGGTGAGATAGAAGACGAACTTGTTACCGTGGCGTACGCGATCT
GTAATCATTCTTCCACCGTTTCACTTCGTGCTACTGATGAAATGATAGCT
CTTCCATTCATCAACGCCCAACAACAGATGATTCTCGCTCGAAATGTGGC
AAACAGTTTGCTGTCAATTGTACCAGATTCTTCGCAGAAATTGTACTTTG
GAGACACTAGAAGAGTGACAATCATCAAGAAAAAGTTCAATTATCTCATA
CTTGGCTTGGCTATTTCTAATGTTGGGCTGTTGATCCTGTGTAAGATTTT
GAAGCATTGCGTGAAAAGAGATGTCCATGTGGACCCGTTTTCTTCGATAT
CCATGTTTTGGCTTGGACGAGATTATGGGCGGGAAGACGGCTCATGTAAC
CGACCGGTATCACAGGACATTTTGATACAAGGAAGGAGTAGTAGCAGGGG
GGTGCAGATTTGTGCGGTTGAAGCGGATAAATCTGGTACTGACACTTTCA
GTGTACCGTCATCCACTGATGAAGAGGTATAA
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Coding sequence (CDS) from alignment at tig00000165_pilon:373282..374613+

>Gchil2703.t1 ID=Gchil2703.t1|Name=Gchil2703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000165_pilon:373282..374613+ (Gracilaria chilensis NLEC103_M9 male)
atgccgtcaaccactttgTACTTGTCTTTCGAAGTGGGCAATCTTGTCGT
CTGGCTATGGCTTGAGGTGCTTGCCCTGGCCGCTGTTATTGTTTGGACCA
CTGACTCGGCAAAAATATACGTGTCCATCTACTGGAAACGATCGAAAACT
CTTCGTTTACGAGCCAAACGCACTCTAATCGATTTTATTCCAATGAACGG
TGACCTTCGCGTTGTACCACAAGTACCGAAGCTCATTATTACCCTTGCTC
GCATCACAGTAACGATTCTGGTGGCAGTTAGTGCCTTGGGAATCGATCAA
GGTCTCGTGTATACTCGCTACGCGCCGACCACGCACGTTATCTCAGCCAC
CGATGCGCAGTTTTCTGGCAGAAGCTATGATGGAAGAAGAGAAAATTCCA
GACAGGATTTCGCCGTGGCTGCTTGTGAAGATGTGAATGTTATTTCACTG
GTCAAGTTCAAGGGCTTCGTTTCTGGCAATCGTTTCAGTTGTGAATCTTC
CATTAATGTTGGAGAGAAGGAGAAGGTGGTTGAGGTGATATGGGACCACG
ATACAGTGCAGCAAATTTCCGATGGCCAAGCTCTGCAGGTTAACATTGCC
CTGGGAGAACGATCTGCTTTGTCTGAAGGACTTTCTAATGACACCTTTGT
TGTGTTGGAAGATTCGACTGGCGCGCCGGTTCACATGAGCGTCGTGCGAC
GAAAAATGAGAAACACCACTTTTGGTACATGTGATAGAGCTGGTAATAAT
GCAGCCGCTACTTTACATGGGGAATTTTTAGTTTTCTCAAATGATATTGA
TGAAGTGGGTGAGATAGAAGACGAACTTGTTACCGTGGCGTACGCGATCT
GTAATCATTCTTCCACCGTTTCACTTCGTGCTACTGATGAAATGATAGCT
CTTCCATTCATCAACGCCCAACAACAGATGATTCTCGCTCGAAATGTGGC
AAACAGTTTGCTGTCAATTGTACCAGATTCTTCGCAGAAATTGTACTTTG
GAGACACTAGAAGAGTGACAATCATCAAGAAAAAGTTCAATTATCTCATA
CTTGGCTTGGCTATTTCTAATGTTGGGCTGTTGATCCTGTGTAAGATTTT
GAAGCATTGCGTGAAAAGAGATGTCCATGTGGACCCGTTTTCTTCGATAT
CCATGTTTTGGCTTGGACGAGATTATGGGCGGGAAGACGGCTCATGTAAC
CGACCGGTATCACAGGACATTTTGATACAAGGAAGGAGTAGTAGCAGGGG
GGTGCAGATTTGTGCGGTTGAAGCGGATAAATCTGGTACTGACACTTTCA
GTGTACCGTCATCCACTGATGAAGAGGTATAA
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