Gchil2701.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2701.t1
Unique NameGchil2701.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:328331..330046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_03376T0
PFAMsC2,Copine,zf-C3HC4_3,zf-MYND
Max annot lvl2759|Eukaryota
KEGG koko:K16280
Evalue1.11e-88
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
EC2.3.2.27
Descriptionnegative regulation of response to water deprivation
COG categoryU
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2701Gchil2701Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 328331..330046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2701.t1.stop1Gchil2701.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 328331..328333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2701.t1.CDS1Gchil2701.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 328331..330046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2701.t1.exon1Gchil2701.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 328331..330046 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2701.t1.start1Gchil2701.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 330044..330046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2701.t1Gchil2701.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 328331..330046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2701.t1 ID=Gchil2701.t1|Name=Gchil2701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=572bp
MAAEACESRLSIHLSCSNLRNMDFIGRSDPFALLFLDPTGSVAGRHHPKD
PPSSPSPNASLGRARSARPGSYPGREAYWQRVGITETIYNSLNVAWATSF
EIRFFFERAQKLAVDVFDRDNASEKDADLHRHDYLGSAEVSVPALVRAPG
QRKTVQLKIAAKPNRKCGTVTIIAENVSYSKLRINFNPRLTSFSPGFSFN
YGKGPYLTVLRPAADGDDINTRSSETIIVWRSPVPAIPTAHKCYSFQQLS
NNYEKFCRRDEELRLEFQISYDKGGRHRIVASSSCSLEECTQNDGRIPLT
MISTGCFPSPQRKPVLLLNNRTMTEDRTFLDYIIGGCDMSLVIAIDFTAS
NGDPSQRGTLHFFDSMEPNEYELAIRAVGDILAAYSADQRFPAYGFGAKL
PPDFHQPCHKFSLTGSPDPTCHTIDDVLNMYRQTLYNVRLSGPTHFSEVI
RAAAEHANVEVTQNQQSYSTLLIVTDGVISDMQSTLREISLASMLPMSIV
IIGVGDADFTDMRELDGDDRDQERDIVQFVMFRQYRDTPEVLRSMVLEEI
PGQLVQYMTQRNIIPNPPPAD*
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spliced messenger RNA

>Gchil2701.t1 ID=Gchil2701.t1|Name=Gchil2701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000165_pilon:328331..330046- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGAAGCATGCGAGTCGCGTCTCTCCATCCATCTGTCTTGCTC
AAATCTTCGCAACATGGATTTCATCGGTCGTTCCGACCCTTTCGCCCTGC
TCTTCCTCGACCCCACTGGGTCTGTCGCCGGCCGTCATCACCCGAAAGAC
CCACCGTCCTCTCCCTCTCCCAACGCCTCGCTCGGTCGAGCCCGCTCAGC
GCGGCCCGGCTCATACCCTGGCCGCGAGGCGTACTGGCAGCGAGTTGGTA
TCACGGAAACAATCTACAACTCTCTAAACGTAGCGTGGGCCACCAGTTTC
GAGATCCGGTTTTTCTTTGAGAGAGCCCAAAAGCTGGCTGTAGATGTATT
TGACAGGGATAATGCAAGTGAAAAGGATGCTGACCTTCACCGACATGACT
ATCTTGGTTCTGCCGAAGTTTCGGTCCCAGCACTTGTCAGAGCCCCGGGC
CAGCGTAAAACCGTGCAACTAAAAATTGCTGCCAAGCCGAATCGCAAGTG
TGGGACCGTCACCATCATTGCGGAAAACGTTTCGTACAGTAAGCTGCGTA
TTAACTTTAACCCGCGTTTGACCTCTTTCTCCCCCGGGTTTTCGTTTAAT
TATGGCAAAGGCCCATATCTCACAGTCCTACGCCCGGCTGCGGACGGGGA
CGACATAAACACTAGGAGTAGCGAAACCATTATCGTTTGGCGCTCACCAG
TTCCCGCCATACCCACCGCCCACAAGTGCTACAGTTTTCAACAGCTTTCT
AACAATTACGAAAAGTTTTGTCGCCGGGACGAGGAATTACGTCTTGAATT
TCAGATATCCTACGACAAGGGAGGGAGACATCGAATTGTTGCATCTTCGA
GTTGTTCGCTTGAAGAATGCACTCAAAATGATGGGCGTATTCCTTTGACG
ATGATTAGCACTGGTTGCTTTCCCTCTCCTCAGCGCAAACCTGTGTTGCT
TCTTAACAATCGCACCATGACTGAAGACCGCACTTTTCTGGACTACATCA
TCGGTGGGTGTGATATGTCTCTCGTCATTGCGATTGATTTCACGGCCAGC
AACGGAGACCCGTCGCAAAGAGGCACGCTGCATTTTTTCGATTCCATGGA
ACCAAATGAATATGAGTTGGCCATCCGAGCCGTTGGGGACATTCTCGCTG
CATACAGTGCAGACCAGCGATTTCCAGCGTATGGCTTTGGCGCCAAGTTA
CCTCCTGACTTTCATCAGCCTTGCCACAAGTTTTCGCTCACTGGGAGTCC
TGACCCCACGTGCCATACTATTGACGATGTGCTCAACATGTATCGCCAAA
CTCTTTACAATGTTAGACTGTCTGGACCCACTCATTTTTCAGAGGTAATT
CGCGCTGCCGCCGAACATGCCAACGTCGAAGTTACGCAGAATCAGCAATC
TTACTCTACTCTTCTGATTGTTACCGATGGTGTGATCAGTGATATGCAGA
GCACGTTGCGCGAGATTTCTCTCGCAAGCATGCTTCCCATGTCAATTGTT
ATCATTGGGGTCGGTGATGCGGACTTTACGGACATGCGCGAGCTCGATGG
GGATGATCGCGATCAGGAACGAGATATAGTGCAATTCGTCATGTTCAGGC
AGTACAGAGACACCCCTGAGGTGCTCCGGTCAATGGTTTTGGAAGAAATT
CCAGGCCAGCTTGTGCAGTACATGACACAAAGAAACATAATTCCGAATCC
GCCGCCAGCCGATTAA
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protein sequence of Gchil2701.t1

>Gchil2701.t1 ID=Gchil2701.t1|Name=Gchil2701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=572bp
MAAEACESRLSIHLSCSNLRNMDFIGRSDPFALLFLDPTGSVAGRHHPKD
PPSSPSPNASLGRARSARPGSYPGREAYWQRVGITETIYNSLNVAWATSF
EIRFFFERAQKLAVDVFDRDNASEKDADLHRHDYLGSAEVSVPALVRAPG
QRKTVQLKIAAKPNRKCGTVTIIAENVSYSKLRINFNPRLTSFSPGFSFN
YGKGPYLTVLRPAADGDDINTRSSETIIVWRSPVPAIPTAHKCYSFQQLS
NNYEKFCRRDEELRLEFQISYDKGGRHRIVASSSCSLEECTQNDGRIPLT
MISTGCFPSPQRKPVLLLNNRTMTEDRTFLDYIIGGCDMSLVIAIDFTAS
NGDPSQRGTLHFFDSMEPNEYELAIRAVGDILAAYSADQRFPAYGFGAKL
PPDFHQPCHKFSLTGSPDPTCHTIDDVLNMYRQTLYNVRLSGPTHFSEVI
RAAAEHANVEVTQNQQSYSTLLIVTDGVISDMQSTLREISLASMLPMSIV
IIGVGDADFTDMRELDGDDRDQERDIVQFVMFRQYRDTPEVLRSMVLEEI
PGQLVQYMTQRNIIPNPPPAD*
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mRNA from alignment at tig00000165_pilon:328331..330046-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2701.t1 ID=Gchil2701.t1|Name=Gchil2701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000165_pilon:328331..330046- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGAAGCATGCGAGTCGCGTCTCTCCATCCATCTGTCTTGCTC
AAATCTTCGCAACATGGATTTCATCGGTCGTTCCGACCCTTTCGCCCTGC
TCTTCCTCGACCCCACTGGGTCTGTCGCCGGCCGTCATCACCCGAAAGAC
CCACCGTCCTCTCCCTCTCCCAACGCCTCGCTCGGTCGAGCCCGCTCAGC
GCGGCCCGGCTCATACCCTGGCCGCGAGGCGTACTGGCAGCGAGTTGGTA
TCACGGAAACAATCTACAACTCTCTAAACGTAGCGTGGGCCACCAGTTTC
GAGATCCGGTTTTTCTTTGAGAGAGCCCAAAAGCTGGCTGTAGATGTATT
TGACAGGGATAATGCAAGTGAAAAGGATGCTGACCTTCACCGACATGACT
ATCTTGGTTCTGCCGAAGTTTCGGTCCCAGCACTTGTCAGAGCCCCGGGC
CAGCGTAAAACCGTGCAACTAAAAATTGCTGCCAAGCCGAATCGCAAGTG
TGGGACCGTCACCATCATTGCGGAAAACGTTTCGTACAGTAAGCTGCGTA
TTAACTTTAACCCGCGTTTGACCTCTTTCTCCCCCGGGTTTTCGTTTAAT
TATGGCAAAGGCCCATATCTCACAGTCCTACGCCCGGCTGCGGACGGGGA
CGACATAAACACTAGGAGTAGCGAAACCATTATCGTTTGGCGCTCACCAG
TTCCCGCCATACCCACCGCCCACAAGTGCTACAGTTTTCAACAGCTTTCT
AACAATTACGAAAAGTTTTGTCGCCGGGACGAGGAATTACGTCTTGAATT
TCAGATATCCTACGACAAGGGAGGGAGACATCGAATTGTTGCATCTTCGA
GTTGTTCGCTTGAAGAATGCACTCAAAATGATGGGCGTATTCCTTTGACG
ATGATTAGCACTGGTTGCTTTCCCTCTCCTCAGCGCAAACCTGTGTTGCT
TCTTAACAATCGCACCATGACTGAAGACCGCACTTTTCTGGACTACATCA
TCGGTGGGTGTGATATGTCTCTCGTCATTGCGATTGATTTCACGGCCAGC
AACGGAGACCCGTCGCAAAGAGGCACGCTGCATTTTTTCGATTCCATGGA
ACCAAATGAATATGAGTTGGCCATCCGAGCCGTTGGGGACATTCTCGCTG
CATACAGTGCAGACCAGCGATTTCCAGCGTATGGCTTTGGCGCCAAGTTA
CCTCCTGACTTTCATCAGCCTTGCCACAAGTTTTCGCTCACTGGGAGTCC
TGACCCCACGTGCCATACTATTGACGATGTGCTCAACATGTATCGCCAAA
CTCTTTACAATGTTAGACTGTCTGGACCCACTCATTTTTCAGAGGTAATT
CGCGCTGCCGCCGAACATGCCAACGTCGAAGTTACGCAGAATCAGCAATC
TTACTCTACTCTTCTGATTGTTACCGATGGTGTGATCAGTGATATGCAGA
GCACGTTGCGCGAGATTTCTCTCGCAAGCATGCTTCCCATGTCAATTGTT
ATCATTGGGGTCGGTGATGCGGACTTTACGGACATGCGCGAGCTCGATGG
GGATGATCGCGATCAGGAACGAGATATAGTGCAATTCGTCATGTTCAGGC
AGTACAGAGACACCCCTGAGGTGCTCCGGTCAATGGTTTTGGAAGAAATT
CCAGGCCAGCTTGTGCAGTACATGACACAAAGAAACATAATTCCGAATCC
GCCGCCAGCCGATTAA
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Coding sequence (CDS) from alignment at tig00000165_pilon:328331..330046-

>Gchil2701.t1 ID=Gchil2701.t1|Name=Gchil2701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00000165_pilon:328331..330046- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGAAGCATGCGAGTCGCGTCTCTCCATCCATCTGTCTTGCTC
AAATCTTCGCAACATGGATTTCATCGGTCGTTCCGACCCTTTCGCCCTGC
TCTTCCTCGACCCCACTGGGTCTGTCGCCGGCCGTCATCACCCGAAAGAC
CCACCGTCCTCTCCCTCTCCCAACGCCTCGCTCGGTCGAGCCCGCTCAGC
GCGGCCCGGCTCATACCCTGGCCGCGAGGCGTACTGGCAGCGAGTTGGTA
TCACGGAAACAATCTACAACTCTCTAAACGTAGCGTGGGCCACCAGTTTC
GAGATCCGGTTTTTCTTTGAGAGAGCCCAAAAGCTGGCTGTAGATGTATT
TGACAGGGATAATGCAAGTGAAAAGGATGCTGACCTTCACCGACATGACT
ATCTTGGTTCTGCCGAAGTTTCGGTCCCAGCACTTGTCAGAGCCCCGGGC
CAGCGTAAAACCGTGCAACTAAAAATTGCTGCCAAGCCGAATCGCAAGTG
TGGGACCGTCACCATCATTGCGGAAAACGTTTCGTACAGTAAGCTGCGTA
TTAACTTTAACCCGCGTTTGACCTCTTTCTCCCCCGGGTTTTCGTTTAAT
TATGGCAAAGGCCCATATCTCACAGTCCTACGCCCGGCTGCGGACGGGGA
CGACATAAACACTAGGAGTAGCGAAACCATTATCGTTTGGCGCTCACCAG
TTCCCGCCATACCCACCGCCCACAAGTGCTACAGTTTTCAACAGCTTTCT
AACAATTACGAAAAGTTTTGTCGCCGGGACGAGGAATTACGTCTTGAATT
TCAGATATCCTACGACAAGGGAGGGAGACATCGAATTGTTGCATCTTCGA
GTTGTTCGCTTGAAGAATGCACTCAAAATGATGGGCGTATTCCTTTGACG
ATGATTAGCACTGGTTGCTTTCCCTCTCCTCAGCGCAAACCTGTGTTGCT
TCTTAACAATCGCACCATGACTGAAGACCGCACTTTTCTGGACTACATCA
TCGGTGGGTGTGATATGTCTCTCGTCATTGCGATTGATTTCACGGCCAGC
AACGGAGACCCGTCGCAAAGAGGCACGCTGCATTTTTTCGATTCCATGGA
ACCAAATGAATATGAGTTGGCCATCCGAGCCGTTGGGGACATTCTCGCTG
CATACAGTGCAGACCAGCGATTTCCAGCGTATGGCTTTGGCGCCAAGTTA
CCTCCTGACTTTCATCAGCCTTGCCACAAGTTTTCGCTCACTGGGAGTCC
TGACCCCACGTGCCATACTATTGACGATGTGCTCAACATGTATCGCCAAA
CTCTTTACAATGTTAGACTGTCTGGACCCACTCATTTTTCAGAGGTAATT
CGCGCTGCCGCCGAACATGCCAACGTCGAAGTTACGCAGAATCAGCAATC
TTACTCTACTCTTCTGATTGTTACCGATGGTGTGATCAGTGATATGCAGA
GCACGTTGCGCGAGATTTCTCTCGCAAGCATGCTTCCCATGTCAATTGTT
ATCATTGGGGTCGGTGATGCGGACTTTACGGACATGCGCGAGCTCGATGG
GGATGATCGCGATCAGGAACGAGATATAGTGCAATTCGTCATGTTCAGGC
AGTACAGAGACACCCCTGAGGTGCTCCGGTCAATGGTTTTGGAAGAAATT
CCAGGCCAGCTTGTGCAGTACATGACACAAAGAAACATAATTCCGAATCC
GCCGCCAGCCGATTAA
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