Gchil2692.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2692.t1
Unique NameGchil2692.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:173952..175340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_06001T0
PFAMsLPMO_10
Max annot lvl2759|Eukaryota
Evalue5.01e-15
EggNOG OGs28MU0@1|root,2QUC9@2759|Eukaryota
DescriptionLytic polysaccharide mono-oxygenase, cellulose-degrading
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2692Gchil2692Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 173952..175340 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2692.t1.stop1Gchil2692.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 173952..173954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2692.t1.CDS1Gchil2692.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 173952..175340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2692.t1.exon1Gchil2692.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 173952..175340 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2692.t1.start1Gchil2692.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 175338..175340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2692.t1Gchil2692.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 173952..175340 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2692.t1 ID=Gchil2692.t1|Name=Gchil2692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=463bp
MMCASVVFVVASLLRRLLPIALAFALALSSGVRAHGAMVLPRQRGALQQS
RYIPSTIDPDAPRDFYPHFPAGVKNDLEGVGEDSQKQAAGSRGWYPYDPY
DPNFVWRAGVCGDTVAGPQHHLIGGEFYHGAQLVARYRQGATIGIGLSLI
AHHNGFIEAHLCDVSKCPGGDISKECFVSSACTQLNRAVNPECDSGTSMH
CGPIDRNYPGRWYMPCTTNSALGYDYYPPEYATFQLPSNFFCEHCVLQWY
WAAANDCNPPGVLDYFDGPDRPDWQQCPGQGDARGGVTRNKQPCGGPEYF
AEEYYQCADVQIVPLSGARSGVPQPVSAEALELSPHATSTASGDENAGRS
YARMKQFGDGVFESLLFWADNIPSRALKHDTIVDISVYKRVGVEAKVTRN
VDEVQFYVDGEVVHTARSAPYFMFRTSDAIPAYWDDVPVNRPVTIGASAD
GEMAEVTVTFVR*
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spliced messenger RNA

>Gchil2692.t1 ID=Gchil2692.t1|Name=Gchil2692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000165_pilon:173952..175340- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGTGCTTCTGTTGTTTTTGTTGTCGCGTCGTTGCTACGTCGTCT
GTTGCCAATCGCCTTGGCGTTTGCGCTCGCCCTTTCGTCTGGCGTACGCG
CACACGGCGCCATGGTGCTGCCGCGACAGCGCGGTGCGCTGCAGCAGTCG
CGCTACATCCCCAGCACCATCGACCCCGACGCGCCGCGCGATTTCTACCC
GCACTTCCCCGCCGGCGTCAAGAACGACTTGGAGGGCGTCGGAGAGGACT
CGCAGAAGCAGGCCGCTGGCTCGCGCGGCTGGTACCCCTACGATCCGTAT
GACCCCAACTTTGTGTGGCGCGCAGGCGTGTGCGGCGACACTGTCGCCGG
GCCGCAGCACCACCTCATCGGCGGTGAATTCTACCACGGCGCGCAGCTTG
TGGCGCGCTACCGCCAGGGCGCCACCATTGGCATTGGGCTCTCTCTCATT
GCGCACCACAACGGCTTCATCGAGGCGCATCTGTGCGACGTTTCCAAATG
CCCTGGCGGCGACATTTCTAAGGAATGCTTCGTGTCCTCTGCTTGTACGC
AGCTGAACCGCGCCGTTAACCCGGAGTGCGACTCGGGCACTTCCATGCAC
TGCGGCCCCATTGATCGCAACTACCCTGGCCGATGGTACATGCCGTGTAC
CACAAACTCGGCGCTTGGCTACGATTACTACCCGCCCGAGTACGCCACGT
TCCAGCTGCCAAGCAACTTTTTCTGCGAGCATTGTGTGCTGCAATGGTAC
TGGGCCGCCGCCAACGATTGCAACCCGCCCGGCGTGCTCGACTACTTTGA
CGGGCCGGATCGGCCCGACTGGCAGCAGTGCCCCGGTCAGGGCGATGCGC
GCGGCGGCGTCACACGTAACAAGCAGCCGTGCGGCGGACCAGAGTACTTT
GCCGAGGAGTACTACCAATGCGCCGACGTGCAGATTGTGCCGCTGAGCGG
GGCGCGGTCCGGTGTGCCTCAGCCTGTGTCCGCGGAGGCGTTGGAGCTTT
CGCCGCATGCCACGTCTACCGCGTCCGGCGACGAGAACGCCGGAAGAAGC
TACGCTAGGATGAAGCAGTTTGGCGACGGTGTGTTTGAGTCGCTGCTGTT
TTGGGCGGATAACATTCCCAGCCGGGCGCTCAAGCACGACACGATTGTGG
ACATAAGCGTGTACAAGCGCGTGGGCGTGGAGGCCAAAGTGACGCGCAAC
GTGGACGAGGTGCAGTTCTACGTGGATGGCGAAGTTGTACATACGGCGCG
GTCGGCGCCGTACTTTATGTTTCGCACGTCGGACGCTATCCCGGCGTACT
GGGATGACGTGCCGGTGAACCGGCCCGTAACGATTGGCGCCAGCGCCGAT
GGCGAGATGGCCGAAGTGACGGTGACGTTTGTGAGGTAA
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protein sequence of Gchil2692.t1

>Gchil2692.t1 ID=Gchil2692.t1|Name=Gchil2692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=463bp
MMCASVVFVVASLLRRLLPIALAFALALSSGVRAHGAMVLPRQRGALQQS
RYIPSTIDPDAPRDFYPHFPAGVKNDLEGVGEDSQKQAAGSRGWYPYDPY
DPNFVWRAGVCGDTVAGPQHHLIGGEFYHGAQLVARYRQGATIGIGLSLI
AHHNGFIEAHLCDVSKCPGGDISKECFVSSACTQLNRAVNPECDSGTSMH
CGPIDRNYPGRWYMPCTTNSALGYDYYPPEYATFQLPSNFFCEHCVLQWY
WAAANDCNPPGVLDYFDGPDRPDWQQCPGQGDARGGVTRNKQPCGGPEYF
AEEYYQCADVQIVPLSGARSGVPQPVSAEALELSPHATSTASGDENAGRS
YARMKQFGDGVFESLLFWADNIPSRALKHDTIVDISVYKRVGVEAKVTRN
VDEVQFYVDGEVVHTARSAPYFMFRTSDAIPAYWDDVPVNRPVTIGASAD
GEMAEVTVTFVR*
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mRNA from alignment at tig00000165_pilon:173952..175340-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2692.t1 ID=Gchil2692.t1|Name=Gchil2692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000165_pilon:173952..175340- (Gracilaria chilensis NLEC103_M9 male)
ATGATGTGTGCTTCTGTTGTTTTTGTTGTCGCGTCGTTGCTACGTCGTCT
GTTGCCAATCGCCTTGGCGTTTGCGCTCGCCCTTTCGTCTGGCGTACGCG
CACACGGCGCCATGGTGCTGCCGCGACAGCGCGGTGCGCTGCAGCAGTCG
CGCTACATCCCCAGCACCATCGACCCCGACGCGCCGCGCGATTTCTACCC
GCACTTCCCCGCCGGCGTCAAGAACGACTTGGAGGGCGTCGGAGAGGACT
CGCAGAAGCAGGCCGCTGGCTCGCGCGGCTGGTACCCCTACGATCCGTAT
GACCCCAACTTTGTGTGGCGCGCAGGCGTGTGCGGCGACACTGTCGCCGG
GCCGCAGCACCACCTCATCGGCGGTGAATTCTACCACGGCGCGCAGCTTG
TGGCGCGCTACCGCCAGGGCGCCACCATTGGCATTGGGCTCTCTCTCATT
GCGCACCACAACGGCTTCATCGAGGCGCATCTGTGCGACGTTTCCAAATG
CCCTGGCGGCGACATTTCTAAGGAATGCTTCGTGTCCTCTGCTTGTACGC
AGCTGAACCGCGCCGTTAACCCGGAGTGCGACTCGGGCACTTCCATGCAC
TGCGGCCCCATTGATCGCAACTACCCTGGCCGATGGTACATGCCGTGTAC
CACAAACTCGGCGCTTGGCTACGATTACTACCCGCCCGAGTACGCCACGT
TCCAGCTGCCAAGCAACTTTTTCTGCGAGCATTGTGTGCTGCAATGGTAC
TGGGCCGCCGCCAACGATTGCAACCCGCCCGGCGTGCTCGACTACTTTGA
CGGGCCGGATCGGCCCGACTGGCAGCAGTGCCCCGGTCAGGGCGATGCGC
GCGGCGGCGTCACACGTAACAAGCAGCCGTGCGGCGGACCAGAGTACTTT
GCCGAGGAGTACTACCAATGCGCCGACGTGCAGATTGTGCCGCTGAGCGG
GGCGCGGTCCGGTGTGCCTCAGCCTGTGTCCGCGGAGGCGTTGGAGCTTT
CGCCGCATGCCACGTCTACCGCGTCCGGCGACGAGAACGCCGGAAGAAGC
TACGCTAGGATGAAGCAGTTTGGCGACGGTGTGTTTGAGTCGCTGCTGTT
TTGGGCGGATAACATTCCCAGCCGGGCGCTCAAGCACGACACGATTGTGG
ACATAAGCGTGTACAAGCGCGTGGGCGTGGAGGCCAAAGTGACGCGCAAC
GTGGACGAGGTGCAGTTCTACGTGGATGGCGAAGTTGTACATACGGCGCG
GTCGGCGCCGTACTTTATGTTTCGCACGTCGGACGCTATCCCGGCGTACT
GGGATGACGTGCCGGTGAACCGGCCCGTAACGATTGGCGCCAGCGCCGAT
GGCGAGATGGCCGAAGTGACGGTGACGTTTGTGAGGTAA
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Coding sequence (CDS) from alignment at tig00000165_pilon:173952..175340-

>Gchil2692.t1 ID=Gchil2692.t1|Name=Gchil2692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000165_pilon:173952..175340- (Gracilaria chilensis NLEC103_M9 male)
ATGATGTGTGCTTCTGTTGTTTTTGTTGTCGCGTCGTTGCTACGTCGTCT
GTTGCCAATCGCCTTGGCGTTTGCGCTCGCCCTTTCGTCTGGCGTACGCG
CACACGGCGCCATGGTGCTGCCGCGACAGCGCGGTGCGCTGCAGCAGTCG
CGCTACATCCCCAGCACCATCGACCCCGACGCGCCGCGCGATTTCTACCC
GCACTTCCCCGCCGGCGTCAAGAACGACTTGGAGGGCGTCGGAGAGGACT
CGCAGAAGCAGGCCGCTGGCTCGCGCGGCTGGTACCCCTACGATCCGTAT
GACCCCAACTTTGTGTGGCGCGCAGGCGTGTGCGGCGACACTGTCGCCGG
GCCGCAGCACCACCTCATCGGCGGTGAATTCTACCACGGCGCGCAGCTTG
TGGCGCGCTACCGCCAGGGCGCCACCATTGGCATTGGGCTCTCTCTCATT
GCGCACCACAACGGCTTCATCGAGGCGCATCTGTGCGACGTTTCCAAATG
CCCTGGCGGCGACATTTCTAAGGAATGCTTCGTGTCCTCTGCTTGTACGC
AGCTGAACCGCGCCGTTAACCCGGAGTGCGACTCGGGCACTTCCATGCAC
TGCGGCCCCATTGATCGCAACTACCCTGGCCGATGGTACATGCCGTGTAC
CACAAACTCGGCGCTTGGCTACGATTACTACCCGCCCGAGTACGCCACGT
TCCAGCTGCCAAGCAACTTTTTCTGCGAGCATTGTGTGCTGCAATGGTAC
TGGGCCGCCGCCAACGATTGCAACCCGCCCGGCGTGCTCGACTACTTTGA
CGGGCCGGATCGGCCCGACTGGCAGCAGTGCCCCGGTCAGGGCGATGCGC
GCGGCGGCGTCACACGTAACAAGCAGCCGTGCGGCGGACCAGAGTACTTT
GCCGAGGAGTACTACCAATGCGCCGACGTGCAGATTGTGCCGCTGAGCGG
GGCGCGGTCCGGTGTGCCTCAGCCTGTGTCCGCGGAGGCGTTGGAGCTTT
CGCCGCATGCCACGTCTACCGCGTCCGGCGACGAGAACGCCGGAAGAAGC
TACGCTAGGATGAAGCAGTTTGGCGACGGTGTGTTTGAGTCGCTGCTGTT
TTGGGCGGATAACATTCCCAGCCGGGCGCTCAAGCACGACACGATTGTGG
ACATAAGCGTGTACAAGCGCGTGGGCGTGGAGGCCAAAGTGACGCGCAAC
GTGGACGAGGTGCAGTTCTACGTGGATGGCGAAGTTGTACATACGGCGCG
GTCGGCGCCGTACTTTATGTTTCGCACGTCGGACGCTATCCCGGCGTACT
GGGATGACGTGCCGGTGAACCGGCCCGTAACGATTGGCGCCAGCGCCGAT
GGCGAGATGGCCGAAGTGACGGTGACGTTTGTGAGGTAA
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