Gchil2690.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2690.t1
Unique NameGchil2690.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:106811..107767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog710696.Intca_0193
Max annot lvl201174|Actinobacteria
Evalue1.86e-29
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria,2I3GE@201174|Actinobacteria,4FFTN@85021|Intrasporangiaceae
Descriptionamine dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2690Gchil2690Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 106811..107767 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2690.t1.stop1Gchil2690.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 106811..106813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2690.t1.CDS1Gchil2690.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 106811..107767 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2690.t1.exon1Gchil2690.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 106811..107767 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2690.t1.start1Gchil2690.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 107765..107767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2690.t1Gchil2690.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 106811..107767 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2690.t1 ID=Gchil2690.t1|Name=Gchil2690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp
MIIGVIIFSWLTLVFAREVVLPPSAQAEGIAHAAGSLFFVAEFRTGAVFL
VDVATGFASTLVRPAPERVAVGLAAKNGSLFVSGGGMVGNFGVPPRMLVY
DILSGNLIADCLPPKGAVVNDVTADETFAYYTDSARGQVYRLRLAALPQC
EFDVLELPPESFPRVPGVFTANGIVRFASGLVVVNSDANNLFFVDLHTKS
VQQLLPRNAVVGADGLEIFKYKNGATSTLFVVQNILNVVSIWRLRQTGRE
VSAQFVKNITSPDFDTPTTAALGGGRLVVANSRFTTFSFTEDLPDDAEFS
LTALPIRREKIVHSHKYK*
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spliced messenger RNA

>Gchil2690.t1 ID=Gchil2690.t1|Name=Gchil2690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000165_pilon:106811..107767- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATTGGCGTCATCATTTTCTCCTGGCTCACGTTGGTATTCGCACG
CGAAGTGGTTCTCCCGCCTAGCGCTCAGGCGGAAGGCATCGCACACGCGG
CCGGCTCCCTCTTCTTCGTTGCAGAGTTCCGTACTGGTGCAGTCTTCCTA
GTGGATGTTGCGACCGGTTTCGCATCCACACTAGTTCGACCTGCTCCCGA
ACGCGTTGCCGTTGGTCTCGCCGCAAAAAATGGCAGTCTATTTGTGTCTG
GCGGAGGTATGGTAGGTAATTTTGGCGTTCCCCCGCGAATGCTTGTGTAC
GATATCCTGTCAGGCAACCTCATCGCTGATTGTCTTCCACCGAAGGGAGC
TGTGGTGAATGATGTAACCGCAGACGAAACGTTTGCATATTACACCGACT
CTGCCCGAGGGCAGGTGTACAGGTTGCGACTGGCAGCACTTCCGCAATGT
GAATTTGACGTTTTGGAGCTACCTCCTGAATCTTTCCCTAGAGTACCTGG
TGTCTTCACGGCAAACGGGATCGTCCGTTTTGCATCTGGTCTGGTTGTGG
TCAACTCCGATGCGAACAACTTGTTTTTTGTAGATCTACACACGAAATCC
GTACAGCAGTTGCTACCTCGAAACGCAGTGGTTGGTGCAGATGGTTTAGA
GATCTTCAAATACAAGAACGGTGCCACTTCTACTCTTTTCGTTGTGCAAA
ATATTCTAAACGTTGTATCTATTTGGCGCTTGCGTCAGACAGGCAGGGAG
GTGAGTGCTCAATTTGTGAAAAACATCACATCACCCGACTTTGACACTCC
TACAACAGCTGCTCTCGGGGGTGGAAGATTGGTAGTCGCCAATTCCCGAT
TCACGACATTTTCATTTACCGAGGACTTACCGGATGACGCAGAGTTTTCA
TTGACTGCACTCCCAATCCGAAGGGAAAAAATTGTTCATTCCCATAAATA
TAAATAG
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protein sequence of Gchil2690.t1

>Gchil2690.t1 ID=Gchil2690.t1|Name=Gchil2690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MIIGVIIFSWLTLVFAREVVLPPSAQAEGIAHAAGSLFFVAEFRTGAVFL
VDVATGFASTLVRPAPERVAVGLAAKNGSLFVSGGGMVGNFGVPPRMLVY
DILSGNLIADCLPPKGAVVNDVTADETFAYYTDSARGQVYRLRLAALPQC
EFDVLELPPESFPRVPGVFTANGIVRFASGLVVVNSDANNLFFVDLHTKS
VQQLLPRNAVVGADGLEIFKYKNGATSTLFVVQNILNVVSIWRLRQTGRE
VSAQFVKNITSPDFDTPTTAALGGGRLVVANSRFTTFSFTEDLPDDAEFS
LTALPIRREKIVHSHKYK*
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mRNA from alignment at tig00000165_pilon:106811..107767-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2690.t1 ID=Gchil2690.t1|Name=Gchil2690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000165_pilon:106811..107767- (Gracilaria chilensis NLEC103_M9 male)
ATGATTATTGGCGTCATCATTTTCTCCTGGCTCACGTTGGTATTCGCACG
CGAAGTGGTTCTCCCGCCTAGCGCTCAGGCGGAAGGCATCGCACACGCGG
CCGGCTCCCTCTTCTTCGTTGCAGAGTTCCGTACTGGTGCAGTCTTCCTA
GTGGATGTTGCGACCGGTTTCGCATCCACACTAGTTCGACCTGCTCCCGA
ACGCGTTGCCGTTGGTCTCGCCGCAAAAAATGGCAGTCTATTTGTGTCTG
GCGGAGGTATGGTAGGTAATTTTGGCGTTCCCCCGCGAATGCTTGTGTAC
GATATCCTGTCAGGCAACCTCATCGCTGATTGTCTTCCACCGAAGGGAGC
TGTGGTGAATGATGTAACCGCAGACGAAACGTTTGCATATTACACCGACT
CTGCCCGAGGGCAGGTGTACAGGTTGCGACTGGCAGCACTTCCGCAATGT
GAATTTGACGTTTTGGAGCTACCTCCTGAATCTTTCCCTAGAGTACCTGG
TGTCTTCACGGCAAACGGGATCGTCCGTTTTGCATCTGGTCTGGTTGTGG
TCAACTCCGATGCGAACAACTTGTTTTTTGTAGATCTACACACGAAATCC
GTACAGCAGTTGCTACCTCGAAACGCAGTGGTTGGTGCAGATGGTTTAGA
GATCTTCAAATACAAGAACGGTGCCACTTCTACTCTTTTCGTTGTGCAAA
ATATTCTAAACGTTGTATCTATTTGGCGCTTGCGTCAGACAGGCAGGGAG
GTGAGTGCTCAATTTGTGAAAAACATCACATCACCCGACTTTGACACTCC
TACAACAGCTGCTCTCGGGGGTGGAAGATTGGTAGTCGCCAATTCCCGAT
TCACGACATTTTCATTTACCGAGGACTTACCGGATGACGCAGAGTTTTCA
TTGACTGCACTCCCAATCCGAAGGGAAAAAATTGTTCATTCCCATAAATA
TAAATAG
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Coding sequence (CDS) from alignment at tig00000165_pilon:106811..107767-

>Gchil2690.t1 ID=Gchil2690.t1|Name=Gchil2690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000165_pilon:106811..107767- (Gracilaria chilensis NLEC103_M9 male)
ATGATTATTGGCGTCATCATTTTCTCCTGGCTCACGTTGGTATTCGCACG
CGAAGTGGTTCTCCCGCCTAGCGCTCAGGCGGAAGGCATCGCACACGCGG
CCGGCTCCCTCTTCTTCGTTGCAGAGTTCCGTACTGGTGCAGTCTTCCTA
GTGGATGTTGCGACCGGTTTCGCATCCACACTAGTTCGACCTGCTCCCGA
ACGCGTTGCCGTTGGTCTCGCCGCAAAAAATGGCAGTCTATTTGTGTCTG
GCGGAGGTATGGTAGGTAATTTTGGCGTTCCCCCGCGAATGCTTGTGTAC
GATATCCTGTCAGGCAACCTCATCGCTGATTGTCTTCCACCGAAGGGAGC
TGTGGTGAATGATGTAACCGCAGACGAAACGTTTGCATATTACACCGACT
CTGCCCGAGGGCAGGTGTACAGGTTGCGACTGGCAGCACTTCCGCAATGT
GAATTTGACGTTTTGGAGCTACCTCCTGAATCTTTCCCTAGAGTACCTGG
TGTCTTCACGGCAAACGGGATCGTCCGTTTTGCATCTGGTCTGGTTGTGG
TCAACTCCGATGCGAACAACTTGTTTTTTGTAGATCTACACACGAAATCC
GTACAGCAGTTGCTACCTCGAAACGCAGTGGTTGGTGCAGATGGTTTAGA
GATCTTCAAATACAAGAACGGTGCCACTTCTACTCTTTTCGTTGTGCAAA
ATATTCTAAACGTTGTATCTATTTGGCGCTTGCGTCAGACAGGCAGGGAG
GTGAGTGCTCAATTTGTGAAAAACATCACATCACCCGACTTTGACACTCC
TACAACAGCTGCTCTCGGGGGTGGAAGATTGGTAGTCGCCAATTCCCGAT
TCACGACATTTTCATTTACCGAGGACTTACCGGATGACGCAGAGTTTTCA
TTGACTGCACTCCCAATCCGAAGGGAAAAAATTGTTCATTCCCATAAATA
TAAATAG
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