Gchil2678.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2678.t1
Unique NameGchil2678.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length827
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2336788..2339268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2678Gchil2678Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2336788..2339268 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2678.t1.start1Gchil2678.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2336788..2336790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2678.t1.CDS1Gchil2678.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2336788..2339268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2678.t1.exon1Gchil2678.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2336788..2339268 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2678.t1.stop1Gchil2678.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2339266..2339268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2678.t1Gchil2678.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2336788..2339268 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2678.t1 ID=Gchil2678.t1|Name=Gchil2678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=827bp
MRVSCCLLLLVLCAGAIAHPYPYHYANRTRFRSSQSNSTRSSRRGPDPQQ
VAPVINDSHLPSHLRVSHSPLPATIGGGRTLPSSAFYALRFTLSKNLQRN
TKNHKSTFKATNHSPLSEASSSGETTQESLRNHSHLSSQSPTQHRTNSSS
QGNSTLSSQTSSPPYQDERAKSLSEKAARVFKALGLKGLQHLLFSIAQPK
LLDSDDTFGTNRTFPSVSGETDDVEKFTLPPNDTSVKLSEDTNLSEILGL
LLKAAQNESDTFTTDPEPPNEATTASDSSQVSPNNSSSAQNRTKTANDGE
LLREVRMNATKEEATHEPPDSARILATNIPVMTHKFTKSKSSLRNRATGA
KVNASRAKGRANRIKTEAIPVIYNSSYVLADKIPFKAYVMIQKLNGLVHL
VNETGSKKENMSQNGNSRSLASRVSQPDELLLLAKRHVMDLYRAIILEGS
NIKHQITNGTVAFTSLSTNTKLSEGVNGIGSEDNEDVETENEDPNNELSE
ALATPLPLAPVSSTVPSEGIGLGSSGENPETMREGSEGIASSSSTVTTPS
PSSTATMGGASVEDAEDGMNDEWETGAVSSQSAIPSPTFTSSVEVLDSAN
TESQIDDMMSTPLPSGHLISVPPMAVPMNLETTTMPEKNYAVRDGENMTQ
LSEMVYKVAREEDVFSMAAAPCDEVTDWMPDVVRRLQNELVGFQFYCVDT
RRPAQDMSPLRRVFADVATDFVQIGADDIKDSIPEDLDMVVSWKGLQRWG
MERGWHFLRGLRDSGAKFVLVSNNPGIMNMEANERAVNVRNSPLLFGEPR
RVVGGVTRDNSLQLLLYAMDDIRNGF*
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spliced messenger RNA

>Gchil2678.t1 ID=Gchil2678.t1|Name=Gchil2678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2481bp|location=Sequence derived from alignment at tig00004400_pilon:2336788..2339268+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTATCTTGCTGCCTATTGCTGCTTGTGCTTTGCGCCGGCGCAAT
TGCGCACCCGTATCCGTATCACTATGCCAACCGCACTCGTTTTCGATCTT
CTCAGTCGAACAGTACGCGCTCTTCTCGTCGAGGCCCTGATCCACAACAA
GTTGCGCCTGTTATCAATGATTCTCACCTCCCATCACATCTCAGGGTTTC
TCACAGTCCGCTACCTGCTACCATTGGCGGTGGTCGCACTCTTCCATCTA
GTGCTTTCTATGCCCTCAGGTTCACTCTATCTAAGAACTTGCAGAGAAAT
ACGAAAAACCACAAATCTACCTTTAAAGCTACCAACCATTCCCCATTGAG
TGAAGCGTCTTCCTCTGGCGAAACTACACAGGAGTCTCTTCGCAATCACT
CACACCTTTCATCACAGAGCCCCACCCAACACAGAACTAATTCCTCCTCG
CAGGGCAACAGCACTTTATCTTCACAAACCAGCAGCCCCCCTTATCAGGA
CGAACGAGCCAAATCACTGAGTGAGAAAGCCGCAAGGGTCTTCAAGGCTT
TGGGCTTGAAGGGTTTGCAACATCTCCTTTTCTCAATCGCCCAACCCAAA
CTTTTGGATAGCGACGACACTTTCGGGACGAACCGCACCTTCCCGTCTGT
TTCTGGAGAAACTGATGACGTGGAGAAATTTACCCTTCCTCCCAATGATA
CTTCAGTCAAGTTATCCGAAGACACAAACTTATCCGAAATTCTTGGGTTG
CTTTTGAAAGCCGCTCAGAATGAATCTGATACCTTCACAACAGATCCAGA
GCCGCCGAATGAGGCAACAACAGCATCAGACTCGTCACAAGTGTCACCTA
ACAATAGTTCTTCAGCCCAGAACCGAACAAAGACCGCAAACGATGGGGAG
CTTTTGCGCGAGGTTCGGATGAATGCTACTAAGGAAGAAGCCACCCATGA
ACCCCCGGACAGCGCACGAATATTGGCAACCAACATTCCTGTCATGACGC
ACAAATTCACTAAATCCAAATCTTCACTGCGAAATCGGGCCACTGGAGCT
AAGGTGAATGCATCCAGAGCGAAAGGGCGGGCGAATCGGATCAAAACCGA
GGCTATCCCTGTCATCTACAACAGTTCGTATGTGTTGGCAGACAAGATTC
CATTCAAAGCTTACGTAATGATTCAGAAGTTGAATGGTCTGGTCCATCTC
GTGAACGAAACCGGTTCTAAAAAGGAAAACATGTCGCAAAATGGAAATTC
TCGATCGCTTGCAAGTCGTGTCAGTCAGCCGGACGAACTTTTGCTATTGG
CTAAGAGGCATGTCATGGACTTGTATAGAGCCATTATTCTGGAAGGATCA
AACATCAAGCACCAAATAACGAACGGTACAGTCGCGTTTACTTCACTTTC
GACCAATACAAAGCTTTCTGAAGGTGTGAATGGAATTGGTTCCGAAGACA
ATGAAGACGTGGAGACCGAGAACGAGGATCCAAACAACGAGTTGAGTGAG
GCCCTGGCCACTCCGCTTCCTTTAGCACCAGTATCGTCAACAGTCCCTTC
TGAAGGGATCGGATTGGGTTCTTCTGGGGAGAATCCGGAAACGATGCGAG
AAGGAAGTGAAGGAATCGCATCGTCTTCATCGACTGTAACGACCCCTTCT
CCTAGCTCTACGGCGACAATGGGAGGGGCCTCTGTCGAGGATGCTGAGGA
TGGCATGAACGATGAATGGGAGACTGGGGCAGTTTCGTCCCAATCAGCTA
TACCGTCGCCCACATTTACTTCGTCTGTTGAGGTTCTTGATTCTGCCAAC
ACTGAATCCCAAATTGACGACATGATGTCAACTCCTTTACCTTCAGGACA
TCTTATTAGTGTTCCTCCAATGGCAGTACCTATGAACTTGGAAACAACTA
CGATGCCCGAAAAGAACTATGCGGTGCGAGATGGAGAAAACATGACTCAA
CTTTCAGAAATGGTCTACAAAGTAGCCCGCGAAGAAGATGTGTTTTCAAT
GGCAGCCGCGCCTTGTGACGAAGTTACGGATTGGATGCCCGATGTAGTGC
GTCGATTGCAAAACGAATTAGTCGGTTTTCAGTTTTACTGCGTCGATACA
AGACGACCTGCTCAGGATATGAGCCCTCTAAGACGGGTCTTTGCAGATGT
TGCGACAGACTTCGTTCAAATAGGTGCTGACGATATCAAGGACTCGATTC
CAGAGGACTTGGATATGGTGGTGAGCTGGAAAGGATTGCAACGATGGGGG
ATGGAAAGAGGATGGCACTTTCTGCGAGGTCTGAGAGACAGTGGGGCGAA
GTTCGTGCTGGTGAGCAACAACCCTGGAATCATGAACATGGAAGCAAATG
AGAGAGCTGTGAACGTTCGCAACTCGCCTCTGTTGTTTGGCGAACCGCGT
CGAGTGGTTGGTGGGGTTACGCGGGATAACTCCCTGCAGCTTCTGCTTTA
CGCTATGGATGACATTCGGAATGGGTTTTAA
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protein sequence of Gchil2678.t1

>Gchil2678.t1 ID=Gchil2678.t1|Name=Gchil2678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=827bp
MRVSCCLLLLVLCAGAIAHPYPYHYANRTRFRSSQSNSTRSSRRGPDPQQ
VAPVINDSHLPSHLRVSHSPLPATIGGGRTLPSSAFYALRFTLSKNLQRN
TKNHKSTFKATNHSPLSEASSSGETTQESLRNHSHLSSQSPTQHRTNSSS
QGNSTLSSQTSSPPYQDERAKSLSEKAARVFKALGLKGLQHLLFSIAQPK
LLDSDDTFGTNRTFPSVSGETDDVEKFTLPPNDTSVKLSEDTNLSEILGL
LLKAAQNESDTFTTDPEPPNEATTASDSSQVSPNNSSSAQNRTKTANDGE
LLREVRMNATKEEATHEPPDSARILATNIPVMTHKFTKSKSSLRNRATGA
KVNASRAKGRANRIKTEAIPVIYNSSYVLADKIPFKAYVMIQKLNGLVHL
VNETGSKKENMSQNGNSRSLASRVSQPDELLLLAKRHVMDLYRAIILEGS
NIKHQITNGTVAFTSLSTNTKLSEGVNGIGSEDNEDVETENEDPNNELSE
ALATPLPLAPVSSTVPSEGIGLGSSGENPETMREGSEGIASSSSTVTTPS
PSSTATMGGASVEDAEDGMNDEWETGAVSSQSAIPSPTFTSSVEVLDSAN
TESQIDDMMSTPLPSGHLISVPPMAVPMNLETTTMPEKNYAVRDGENMTQ
LSEMVYKVAREEDVFSMAAAPCDEVTDWMPDVVRRLQNELVGFQFYCVDT
RRPAQDMSPLRRVFADVATDFVQIGADDIKDSIPEDLDMVVSWKGLQRWG
MERGWHFLRGLRDSGAKFVLVSNNPGIMNMEANERAVNVRNSPLLFGEPR
RVVGGVTRDNSLQLLLYAMDDIRNGF*
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mRNA from alignment at tig00004400_pilon:2336788..2339268+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2678.t1 ID=Gchil2678.t1|Name=Gchil2678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2481bp|location=Sequence derived from alignment at tig00004400_pilon:2336788..2339268+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGTATCTTGCTGCCTATTGCTGCTTGTGCTTTGCGCCGGCGCAAT
TGCGCACCCGTATCCGTATCACTATGCCAACCGCACTCGTTTTCGATCTT
CTCAGTCGAACAGTACGCGCTCTTCTCGTCGAGGCCCTGATCCACAACAA
GTTGCGCCTGTTATCAATGATTCTCACCTCCCATCACATCTCAGGGTTTC
TCACAGTCCGCTACCTGCTACCATTGGCGGTGGTCGCACTCTTCCATCTA
GTGCTTTCTATGCCCTCAGGTTCACTCTATCTAAGAACTTGCAGAGAAAT
ACGAAAAACCACAAATCTACCTTTAAAGCTACCAACCATTCCCCATTGAG
TGAAGCGTCTTCCTCTGGCGAAACTACACAGGAGTCTCTTCGCAATCACT
CACACCTTTCATCACAGAGCCCCACCCAACACAGAACTAATTCCTCCTCG
CAGGGCAACAGCACTTTATCTTCACAAACCAGCAGCCCCCCTTATCAGGA
CGAACGAGCCAAATCACTGAGTGAGAAAGCCGCAAGGGTCTTCAAGGCTT
TGGGCTTGAAGGGTTTGCAACATCTCCTTTTCTCAATCGCCCAACCCAAA
CTTTTGGATAGCGACGACACTTTCGGGACGAACCGCACCTTCCCGTCTGT
TTCTGGAGAAACTGATGACGTGGAGAAATTTACCCTTCCTCCCAATGATA
CTTCAGTCAAGTTATCCGAAGACACAAACTTATCCGAAATTCTTGGGTTG
CTTTTGAAAGCCGCTCAGAATGAATCTGATACCTTCACAACAGATCCAGA
GCCGCCGAATGAGGCAACAACAGCATCAGACTCGTCACAAGTGTCACCTA
ACAATAGTTCTTCAGCCCAGAACCGAACAAAGACCGCAAACGATGGGGAG
CTTTTGCGCGAGGTTCGGATGAATGCTACTAAGGAAGAAGCCACCCATGA
ACCCCCGGACAGCGCACGAATATTGGCAACCAACATTCCTGTCATGACGC
ACAAATTCACTAAATCCAAATCTTCACTGCGAAATCGGGCCACTGGAGCT
AAGGTGAATGCATCCAGAGCGAAAGGGCGGGCGAATCGGATCAAAACCGA
GGCTATCCCTGTCATCTACAACAGTTCGTATGTGTTGGCAGACAAGATTC
CATTCAAAGCTTACGTAATGATTCAGAAGTTGAATGGTCTGGTCCATCTC
GTGAACGAAACCGGTTCTAAAAAGGAAAACATGTCGCAAAATGGAAATTC
TCGATCGCTTGCAAGTCGTGTCAGTCAGCCGGACGAACTTTTGCTATTGG
CTAAGAGGCATGTCATGGACTTGTATAGAGCCATTATTCTGGAAGGATCA
AACATCAAGCACCAAATAACGAACGGTACAGTCGCGTTTACTTCACTTTC
GACCAATACAAAGCTTTCTGAAGGTGTGAATGGAATTGGTTCCGAAGACA
ATGAAGACGTGGAGACCGAGAACGAGGATCCAAACAACGAGTTGAGTGAG
GCCCTGGCCACTCCGCTTCCTTTAGCACCAGTATCGTCAACAGTCCCTTC
TGAAGGGATCGGATTGGGTTCTTCTGGGGAGAATCCGGAAACGATGCGAG
AAGGAAGTGAAGGAATCGCATCGTCTTCATCGACTGTAACGACCCCTTCT
CCTAGCTCTACGGCGACAATGGGAGGGGCCTCTGTCGAGGATGCTGAGGA
TGGCATGAACGATGAATGGGAGACTGGGGCAGTTTCGTCCCAATCAGCTA
TACCGTCGCCCACATTTACTTCGTCTGTTGAGGTTCTTGATTCTGCCAAC
ACTGAATCCCAAATTGACGACATGATGTCAACTCCTTTACCTTCAGGACA
TCTTATTAGTGTTCCTCCAATGGCAGTACCTATGAACTTGGAAACAACTA
CGATGCCCGAAAAGAACTATGCGGTGCGAGATGGAGAAAACATGACTCAA
CTTTCAGAAATGGTCTACAAAGTAGCCCGCGAAGAAGATGTGTTTTCAAT
GGCAGCCGCGCCTTGTGACGAAGTTACGGATTGGATGCCCGATGTAGTGC
GTCGATTGCAAAACGAATTAGTCGGTTTTCAGTTTTACTGCGTCGATACA
AGACGACCTGCTCAGGATATGAGCCCTCTAAGACGGGTCTTTGCAGATGT
TGCGACAGACTTCGTTCAAATAGGTGCTGACGATATCAAGGACTCGATTC
CAGAGGACTTGGATATGGTGGTGAGCTGGAAAGGATTGCAACGATGGGGG
ATGGAAAGAGGATGGCACTTTCTGCGAGGTCTGAGAGACAGTGGGGCGAA
GTTCGTGCTGGTGAGCAACAACCCTGGAATCATGAACATGGAAGCAAATG
AGAGAGCTGTGAACGTTCGCAACTCGCCTCTGTTGTTTGGCGAACCGCGT
CGAGTGGTTGGTGGGGTTACGCGGGATAACTCCCTGCAGCTTCTGCTTTA
CGCTATGGATGACATTCGGAATGGGTTTTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2336788..2339268+

>Gchil2678.t1 ID=Gchil2678.t1|Name=Gchil2678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2481bp|location=Sequence derived from alignment at tig00004400_pilon:2336788..2339268+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGTATCTTGCTGCCTATTGCTGCTTGTGCTTTGCGCCGGCGCAAT
TGCGCACCCGTATCCGTATCACTATGCCAACCGCACTCGTTTTCGATCTT
CTCAGTCGAACAGTACGCGCTCTTCTCGTCGAGGCCCTGATCCACAACAA
GTTGCGCCTGTTATCAATGATTCTCACCTCCCATCACATCTCAGGGTTTC
TCACAGTCCGCTACCTGCTACCATTGGCGGTGGTCGCACTCTTCCATCTA
GTGCTTTCTATGCCCTCAGGTTCACTCTATCTAAGAACTTGCAGAGAAAT
ACGAAAAACCACAAATCTACCTTTAAAGCTACCAACCATTCCCCATTGAG
TGAAGCGTCTTCCTCTGGCGAAACTACACAGGAGTCTCTTCGCAATCACT
CACACCTTTCATCACAGAGCCCCACCCAACACAGAACTAATTCCTCCTCG
CAGGGCAACAGCACTTTATCTTCACAAACCAGCAGCCCCCCTTATCAGGA
CGAACGAGCCAAATCACTGAGTGAGAAAGCCGCAAGGGTCTTCAAGGCTT
TGGGCTTGAAGGGTTTGCAACATCTCCTTTTCTCAATCGCCCAACCCAAA
CTTTTGGATAGCGACGACACTTTCGGGACGAACCGCACCTTCCCGTCTGT
TTCTGGAGAAACTGATGACGTGGAGAAATTTACCCTTCCTCCCAATGATA
CTTCAGTCAAGTTATCCGAAGACACAAACTTATCCGAAATTCTTGGGTTG
CTTTTGAAAGCCGCTCAGAATGAATCTGATACCTTCACAACAGATCCAGA
GCCGCCGAATGAGGCAACAACAGCATCAGACTCGTCACAAGTGTCACCTA
ACAATAGTTCTTCAGCCCAGAACCGAACAAAGACCGCAAACGATGGGGAG
CTTTTGCGCGAGGTTCGGATGAATGCTACTAAGGAAGAAGCCACCCATGA
ACCCCCGGACAGCGCACGAATATTGGCAACCAACATTCCTGTCATGACGC
ACAAATTCACTAAATCCAAATCTTCACTGCGAAATCGGGCCACTGGAGCT
AAGGTGAATGCATCCAGAGCGAAAGGGCGGGCGAATCGGATCAAAACCGA
GGCTATCCCTGTCATCTACAACAGTTCGTATGTGTTGGCAGACAAGATTC
CATTCAAAGCTTACGTAATGATTCAGAAGTTGAATGGTCTGGTCCATCTC
GTGAACGAAACCGGTTCTAAAAAGGAAAACATGTCGCAAAATGGAAATTC
TCGATCGCTTGCAAGTCGTGTCAGTCAGCCGGACGAACTTTTGCTATTGG
CTAAGAGGCATGTCATGGACTTGTATAGAGCCATTATTCTGGAAGGATCA
AACATCAAGCACCAAATAACGAACGGTACAGTCGCGTTTACTTCACTTTC
GACCAATACAAAGCTTTCTGAAGGTGTGAATGGAATTGGTTCCGAAGACA
ATGAAGACGTGGAGACCGAGAACGAGGATCCAAACAACGAGTTGAGTGAG
GCCCTGGCCACTCCGCTTCCTTTAGCACCAGTATCGTCAACAGTCCCTTC
TGAAGGGATCGGATTGGGTTCTTCTGGGGAGAATCCGGAAACGATGCGAG
AAGGAAGTGAAGGAATCGCATCGTCTTCATCGACTGTAACGACCCCTTCT
CCTAGCTCTACGGCGACAATGGGAGGGGCCTCTGTCGAGGATGCTGAGGA
TGGCATGAACGATGAATGGGAGACTGGGGCAGTTTCGTCCCAATCAGCTA
TACCGTCGCCCACATTTACTTCGTCTGTTGAGGTTCTTGATTCTGCCAAC
ACTGAATCCCAAATTGACGACATGATGTCAACTCCTTTACCTTCAGGACA
TCTTATTAGTGTTCCTCCAATGGCAGTACCTATGAACTTGGAAACAACTA
CGATGCCCGAAAAGAACTATGCGGTGCGAGATGGAGAAAACATGACTCAA
CTTTCAGAAATGGTCTACAAAGTAGCCCGCGAAGAAGATGTGTTTTCAAT
GGCAGCCGCGCCTTGTGACGAAGTTACGGATTGGATGCCCGATGTAGTGC
GTCGATTGCAAAACGAATTAGTCGGTTTTCAGTTTTACTGCGTCGATACA
AGACGACCTGCTCAGGATATGAGCCCTCTAAGACGGGTCTTTGCAGATGT
TGCGACAGACTTCGTTCAAATAGGTGCTGACGATATCAAGGACTCGATTC
CAGAGGACTTGGATATGGTGGTGAGCTGGAAAGGATTGCAACGATGGGGG
ATGGAAAGAGGATGGCACTTTCTGCGAGGTCTGAGAGACAGTGGGGCGAA
GTTCGTGCTGGTGAGCAACAACCCTGGAATCATGAACATGGAAGCAAATG
AGAGAGCTGTGAACGTTCGCAACTCGCCTCTGTTGTTTGGCGAACCGCGT
CGAGTGGTTGGTGGGGTTACGCGGGATAACTCCCTGCAGCTTCTGCTTTA
CGCTATGGATGACATTCGGAATGGGTTTTAA
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