Gchil2674.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2674.t1
Unique Name	Gchil2674.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	569

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:2327369..2329075 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706513.1
PFAMs	CBS,CorC_HlyC,DUF21
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue	3.25e-136
EggNOG OGs	COG1253@1\|root,KOG2118@2759\|Eukaryota
Description	magnesium ion homeostasis
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2674	Gchil2674	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 2327369..2329075 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2674.t1.stop1	Gchil2674.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 2327369..2327371 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2674.t1.CDS1	Gchil2674.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 2327369..2329075 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2674.t1.exon1	Gchil2674.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 2327369..2329075 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2674.t1.start1	Gchil2674.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 2329073..2329075 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2674.t1	Gchil2674.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 2327369..2329075 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:2327369..2329075-
coding sequence from alignment at tig00004400_pilon:2327369..2329075-

mRNA sequence

>Gchil2674.t1 ID=Gchil2674.t1|Name=Gchil2674.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=569bp
MSYLSTIVHTAPVGIGSAYGSHSARRHFATVDPSLTTYRHGSMSVPLSST
LAVVVGENGLPKKVAQVSPTTAIQTAEKPPVQKSLLGIACVVFTVAAALA
AAETAITTLWPWKVRELAEKEGEKSPFAILESDLTRFLTTILVSTTSATI
FSTAIATELAGEVFGTASVGYVTAAMTVFFLFFGEILPKALAVHAPAKVA
RVMVPFISTLSIIVYPVGKLLAAASTFILRRLKFPLEGDTTVSEEELRLI
VAGADRSGSIEKYESQIIHNVLDLEETDVKSIMCPRVDMVAIPKENTMAQ
LMELETESHYSRMPVYESTIDNIVGIALAKSLLRYLNEESELLQKTKVAE
VMEPAFFVPESMSIWVALEEMRKRRLHMAVVVDEYGGTAGLVTLEDILEE
VVGEIYDEDDDYEAESQFIANIGESVYTVDGQASLDKVAEAFNLVLSDDD
LDDYGTISGFICAQMGGIPEVGEELVVSHVRFRVAEANDRRIIRLRAEIL
TEEEIAQVTEEEQRLKESEVEVETQDLTRNILDVEPTPKKQKPLNSNGNG
STEKDIAEKRSKRSPKLE*

spliced messenger RNA

>Gchil2674.t1 ID=Gchil2674.t1|Name=Gchil2674.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00004400_pilon:2327369..2329075- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTATCTAAGTACAATCGTGCACACTGCACCGGTTGGTATCGGGTC
CGCATATGGTTCTCATAGTGCGAGAAGACACTTTGCCACCGTAGATCCCA
GTCTCACAACATATCGACATGGTTCGATGTCGGTGCCCTTGAGCTCGACT
TTGGCTGTCGTTGTTGGCGAAAATGGGCTTCCGAAAAAAGTTGCACAAGT
ATCCCCTACCACTGCGATTCAGACAGCCGAAAAACCACCAGTGCAAAAGA
GTTTACTTGGTATAGCGTGCGTGGTGTTCACCGTAGCGGCTGCTTTAGCG
GCTGCCGAGACAGCAATAACAACATTGTGGCCTTGGAAAGTGCGTGAGCT
TGCCGAAAAAGAAGGCGAGAAATCACCGTTTGCTATTTTAGAATCGGACC
TCACGCGTTTCTTGACTACAATCTTGGTCTCGACTACCTCTGCGACAATA
TTCTCAACTGCGATTGCCACAGAGCTAGCTGGGGAAGTCTTCGGAACTGC
ATCCGTCGGCTATGTAACCGCTGCCATGACTGTTTTCTTTCTTTTCTTTG
GCGAAATACTTCCCAAGGCCCTTGCGGTCCATGCTCCTGCAAAAGTGGCT
CGTGTTATGGTCCCTTTCATTAGCACATTATCAATCATAGTATACCCGGT
GGGAAAACTGCTAGCAGCTGCCTCAACGTTCATATTACGTCGTCTAAAGT
TTCCTCTTGAAGGTGATACGACAGTCAGTGAAGAGGAACTCAGACTTATT
GTTGCTGGAGCCGATCGTTCCGGGAGCATCGAAAAGTACGAGTCGCAAAT
TATTCACAATGTTCTTGATCTTGAAGAGACGGATGTGAAGTCTATCATGT
GTCCCCGAGTTGACATGGTGGCCATTCCAAAAGAGAACACAATGGCACAG
CTTATGGAATTGGAAACTGAATCTCATTATTCTCGAATGCCTGTCTACGA
AAGCACCATCGATAATATTGTCGGTATTGCACTAGCAAAATCATTGTTGC
GCTACCTAAACGAAGAATCAGAACTGCTTCAAAAGACAAAAGTTGCGGAA
GTGATGGAACCAGCTTTTTTCGTTCCAGAATCCATGTCGATTTGGGTTGC
CTTGGAAGAGATGAGAAAGCGGCGACTACATATGGCCGTCGTTGTTGATG
AATATGGCGGCACGGCTGGTTTAGTAACTTTGGAGGATATTTTAGAGGAG
GTTGTCGGAGAGATCTACGATGAAGATGACGATTATGAAGCCGAGTCACA
ATTCATTGCGAACATTGGAGAAAGCGTCTACACTGTAGATGGTCAGGCGA
GTTTGGACAAAGTCGCCGAAGCCTTTAATCTTGTGTTGTCAGATGATGAT
CTAGATGATTATGGAACGATATCAGGCTTCATCTGCGCCCAAATGGGCGG
CATTCCTGAAGTGGGGGAAGAGCTTGTTGTATCCCATGTTCGCTTTCGGG
TGGCTGAAGCCAATGACCGTAGAATCATAAGGTTGCGGGCGGAAATTTTG
ACGGAGGAGGAAATTGCTCAGGTAACTGAAGAAGAACAGCGGCTTAAGGA
GAGTGAAGTTGAAGTGGAAACCCAGGATCTAACCCGAAACATATTGGATG
TGGAGCCCACCCCCAAAAAACAAAAACCTCTCAACTCCAATGGTAACGGA
AGTACGGAGAAAGATATAGCAGAGAAGAGAAGCAAAAGATCTCCAAAACT
GGAGTAG

protein sequence of Gchil2674.t1

>Gchil2674.t1 ID=Gchil2674.t1|Name=Gchil2674.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=569bp
MSYLSTIVHTAPVGIGSAYGSHSARRHFATVDPSLTTYRHGSMSVPLSST
LAVVVGENGLPKKVAQVSPTTAIQTAEKPPVQKSLLGIACVVFTVAAALA
AAETAITTLWPWKVRELAEKEGEKSPFAILESDLTRFLTTILVSTTSATI
FSTAIATELAGEVFGTASVGYVTAAMTVFFLFFGEILPKALAVHAPAKVA
RVMVPFISTLSIIVYPVGKLLAAASTFILRRLKFPLEGDTTVSEEELRLI
VAGADRSGSIEKYESQIIHNVLDLEETDVKSIMCPRVDMVAIPKENTMAQ
LMELETESHYSRMPVYESTIDNIVGIALAKSLLRYLNEESELLQKTKVAE
VMEPAFFVPESMSIWVALEEMRKRRLHMAVVVDEYGGTAGLVTLEDILEE
VVGEIYDEDDDYEAESQFIANIGESVYTVDGQASLDKVAEAFNLVLSDDD
LDDYGTISGFICAQMGGIPEVGEELVVSHVRFRVAEANDRRIIRLRAEIL
TEEEIAQVTEEEQRLKESEVEVETQDLTRNILDVEPTPKKQKPLNSNGNG
STEKDIAEKRSKRSPKLE*

mRNA from alignment at tig00004400_pilon:2327369..2329075-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2674.t1 ID=Gchil2674.t1|Name=Gchil2674.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00004400_pilon:2327369..2329075- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTATCTAAGTACAATCGTGCACACTGCACCGGTTGGTATCGGGTC
CGCATATGGTTCTCATAGTGCGAGAAGACACTTTGCCACCGTAGATCCCA
GTCTCACAACATATCGACATGGTTCGATGTCGGTGCCCTTGAGCTCGACT
TTGGCTGTCGTTGTTGGCGAAAATGGGCTTCCGAAAAAAGTTGCACAAGT
ATCCCCTACCACTGCGATTCAGACAGCCGAAAAACCACCAGTGCAAAAGA
GTTTACTTGGTATAGCGTGCGTGGTGTTCACCGTAGCGGCTGCTTTAGCG
GCTGCCGAGACAGCAATAACAACATTGTGGCCTTGGAAAGTGCGTGAGCT
TGCCGAAAAAGAAGGCGAGAAATCACCGTTTGCTATTTTAGAATCGGACC
TCACGCGTTTCTTGACTACAATCTTGGTCTCGACTACCTCTGCGACAATA
TTCTCAACTGCGATTGCCACAGAGCTAGCTGGGGAAGTCTTCGGAACTGC
ATCCGTCGGCTATGTAACCGCTGCCATGACTGTTTTCTTTCTTTTCTTTG
GCGAAATACTTCCCAAGGCCCTTGCGGTCCATGCTCCTGCAAAAGTGGCT
CGTGTTATGGTCCCTTTCATTAGCACATTATCAATCATAGTATACCCGGT
GGGAAAACTGCTAGCAGCTGCCTCAACGTTCATATTACGTCGTCTAAAGT
TTCCTCTTGAAGGTGATACGACAGTCAGTGAAGAGGAACTCAGACTTATT
GTTGCTGGAGCCGATCGTTCCGGGAGCATCGAAAAGTACGAGTCGCAAAT
TATTCACAATGTTCTTGATCTTGAAGAGACGGATGTGAAGTCTATCATGT
GTCCCCGAGTTGACATGGTGGCCATTCCAAAAGAGAACACAATGGCACAG
CTTATGGAATTGGAAACTGAATCTCATTATTCTCGAATGCCTGTCTACGA
AAGCACCATCGATAATATTGTCGGTATTGCACTAGCAAAATCATTGTTGC
GCTACCTAAACGAAGAATCAGAACTGCTTCAAAAGACAAAAGTTGCGGAA
GTGATGGAACCAGCTTTTTTCGTTCCAGAATCCATGTCGATTTGGGTTGC
CTTGGAAGAGATGAGAAAGCGGCGACTACATATGGCCGTCGTTGTTGATG
AATATGGCGGCACGGCTGGTTTAGTAACTTTGGAGGATATTTTAGAGGAG
GTTGTCGGAGAGATCTACGATGAAGATGACGATTATGAAGCCGAGTCACA
ATTCATTGCGAACATTGGAGAAAGCGTCTACACTGTAGATGGTCAGGCGA
GTTTGGACAAAGTCGCCGAAGCCTTTAATCTTGTGTTGTCAGATGATGAT
CTAGATGATTATGGAACGATATCAGGCTTCATCTGCGCCCAAATGGGCGG
CATTCCTGAAGTGGGGGAAGAGCTTGTTGTATCCCATGTTCGCTTTCGGG
TGGCTGAAGCCAATGACCGTAGAATCATAAGGTTGCGGGCGGAAATTTTG
ACGGAGGAGGAAATTGCTCAGGTAACTGAAGAAGAACAGCGGCTTAAGGA
GAGTGAAGTTGAAGTGGAAACCCAGGATCTAACCCGAAACATATTGGATG
TGGAGCCCACCCCCAAAAAACAAAAACCTCTCAACTCCAATGGTAACGGA
AGTACGGAGAAAGATATAGCAGAGAAGAGAAGCAAAAGATCTCCAAAACT
GGAGTAG

Coding sequence (CDS) from alignment at tig00004400_pilon:2327369..2329075-

>Gchil2674.t1 ID=Gchil2674.t1|Name=Gchil2674.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1707bp|location=Sequence derived from alignment at tig00004400_pilon:2327369..2329075- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTATCTAAGTACAATCGTGCACACTGCACCGGTTGGTATCGGGTC
CGCATATGGTTCTCATAGTGCGAGAAGACACTTTGCCACCGTAGATCCCA
GTCTCACAACATATCGACATGGTTCGATGTCGGTGCCCTTGAGCTCGACT
TTGGCTGTCGTTGTTGGCGAAAATGGGCTTCCGAAAAAAGTTGCACAAGT
ATCCCCTACCACTGCGATTCAGACAGCCGAAAAACCACCAGTGCAAAAGA
GTTTACTTGGTATAGCGTGCGTGGTGTTCACCGTAGCGGCTGCTTTAGCG
GCTGCCGAGACAGCAATAACAACATTGTGGCCTTGGAAAGTGCGTGAGCT
TGCCGAAAAAGAAGGCGAGAAATCACCGTTTGCTATTTTAGAATCGGACC
TCACGCGTTTCTTGACTACAATCTTGGTCTCGACTACCTCTGCGACAATA
TTCTCAACTGCGATTGCCACAGAGCTAGCTGGGGAAGTCTTCGGAACTGC
ATCCGTCGGCTATGTAACCGCTGCCATGACTGTTTTCTTTCTTTTCTTTG
GCGAAATACTTCCCAAGGCCCTTGCGGTCCATGCTCCTGCAAAAGTGGCT
CGTGTTATGGTCCCTTTCATTAGCACATTATCAATCATAGTATACCCGGT
GGGAAAACTGCTAGCAGCTGCCTCAACGTTCATATTACGTCGTCTAAAGT
TTCCTCTTGAAGGTGATACGACAGTCAGTGAAGAGGAACTCAGACTTATT
GTTGCTGGAGCCGATCGTTCCGGGAGCATCGAAAAGTACGAGTCGCAAAT
TATTCACAATGTTCTTGATCTTGAAGAGACGGATGTGAAGTCTATCATGT
GTCCCCGAGTTGACATGGTGGCCATTCCAAAAGAGAACACAATGGCACAG
CTTATGGAATTGGAAACTGAATCTCATTATTCTCGAATGCCTGTCTACGA
AAGCACCATCGATAATATTGTCGGTATTGCACTAGCAAAATCATTGTTGC
GCTACCTAAACGAAGAATCAGAACTGCTTCAAAAGACAAAAGTTGCGGAA
GTGATGGAACCAGCTTTTTTCGTTCCAGAATCCATGTCGATTTGGGTTGC
CTTGGAAGAGATGAGAAAGCGGCGACTACATATGGCCGTCGTTGTTGATG
AATATGGCGGCACGGCTGGTTTAGTAACTTTGGAGGATATTTTAGAGGAG
GTTGTCGGAGAGATCTACGATGAAGATGACGATTATGAAGCCGAGTCACA
ATTCATTGCGAACATTGGAGAAAGCGTCTACACTGTAGATGGTCAGGCGA
GTTTGGACAAAGTCGCCGAAGCCTTTAATCTTGTGTTGTCAGATGATGAT
CTAGATGATTATGGAACGATATCAGGCTTCATCTGCGCCCAAATGGGCGG
CATTCCTGAAGTGGGGGAAGAGCTTGTTGTATCCCATGTTCGCTTTCGGG
TGGCTGAAGCCAATGACCGTAGAATCATAAGGTTGCGGGCGGAAATTTTG
ACGGAGGAGGAAATTGCTCAGGTAACTGAAGAAGAACAGCGGCTTAAGGA
GAGTGAAGTTGAAGTGGAAACCCAGGATCTAACCCGAAACATATTGGATG
TGGAGCCCACCCCCAAAAAACAAAAACCTCTCAACTCCAATGGTAACGGA
AGTACGGAGAAAGATATAGCAGAGAAGAGAAGCAAAAGATCTCCAAAACT
GGAGTAG