Gchil2669.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2669.t1
Unique NameGchil2669.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2315954..2317554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2669Gchil2669Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2315954..2317554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2669.t1Gchil2669.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2315954..2317554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2669.t1.stop1Gchil2669.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2315954..2315956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2669.t1.CDS1Gchil2669.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2315954..2317275 -
Gchil2669.t1.CDS2Gchil2669.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2317368..2317554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2669.t1.exon1Gchil2669.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2315954..2317275 -
Gchil2669.t1.exon2Gchil2669.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2317368..2317554 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2669.t1.intron1Gchil2669.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2317276..2317367 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2669.t1.start1Gchil2669.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2317552..2317554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2669.t1 ID=Gchil2669.t1|Name=Gchil2669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=503bp
MILHAFVTAALLAFASAHCIYTDTECVCTQAQAGRTCLRYYSGSGASTKC
ETYECGSGFVCDCAGFEMCDITDCSLMRTVYRPIGAAPSAFGAIVDCELA
TQVTCVTPRNELAPTPSSSSSPAPSMSSSPGPSSSSSPAPSSSSSPAPSM
SSSSAPSMSSSPAPSMSSSPAPSSSSSPAPSMSSSPAPSMSSSPAPSMSS
SPAPSSSSSPVPSSSSSPIPSASSSPAASASSSPAPSLSSSPAPSLSSSP
APSLSSSPVPSASSSPAPSASASPSASASATPSASASPTPSNSPAPSPSA
SSSATPSVSPTPSSAVVVPLGGVCTPTDTCEAGTACSCTGFCSTIISIEI
EALADDGVVPMMCGTELGPPTPDNIVAGSYTYNGVCDDLYYRVSNSGGIW
EALITAVRDVNTNTWYPSVLPPDSGITAIVTKNPPNTDFFTDPAYDFSGW
TPALQHTEFISTYAEYIAFQNTYGGLIWTFDNFRHPRGDEGLTYYRVILP
FC*
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spliced messenger RNA

>Gchil2669.t1 ID=Gchil2669.t1|Name=Gchil2669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004400_pilon:2315954..2317554- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTTCACGCCTTCGTCACCGCCGCGCTGTTGGCCTTTGCCTCCGC
CCATTGCATCTACACCGACACCGAATGCGTCTGCACCCAAGCGCAGGCCG
GTCGAACCTGCCTTCGCTACTACAGCGGCTCCGGGGCCTCCACCAAGTGC
GAGACCTATGAATGCGGCTCTGGTTTCGTTTGTGATTGTGCCGGATTTGA
AATGTGCGATATTACTGATTGCAGCCTCATGCGTACCGTGTATCGCCCCA
TCGGCGCTGCCCCGTCTGCGTTTGGTGCGATTGTTGACTGCGAGCTAGCC
ACCCAGGTGACCTGTGTCACTCCCCGCAACGAGTTGGCTCCCACTCCCAG
CTCGTCCTCTTCACCGGCACCGTCGATGTCGTCATCCCCAGGCCCGTCTT
CATCCTCCTCGCCGGCACCATCTTCTTCTTCTTCGCCGGCACCGTCGATG
TCTTCGTCCTCGGCACCTTCGATGTCTTCCTCCCCGGCACCTTCGATGTC
TTCCTCCCCGGCGCCATCGTCTTCTTCTTCGCCGGCACCGTCGATGTCTT
CGTCCCCAGCACCTTCGATGTCTTCGTCCCCAGCACCTTCGATGTCTTCC
TCCCCGGCACCGTCTTCGTCTTCATCACCTGTGCCATCGTCCTCTTCTTC
ACCGATACCTTCAGCGTCTTCATCGCCGGCAGCTTCAGCGTCCTCCTCGC
CGGCTCCTTCGTTGTCCTCCTCGCCGGCTCCTTCGCTGTCCTCCTCGCCG
GCTCCTTCGCTGTCCTCCTCGCCGGTGCCTTCGGCTTCCTCCTCCCCGGC
TCCATCCGCATCCGCATCTCCGTCTGCGAGCGCGTCAGCCACGCCCTCCG
CCTCGGCTTCGCCCACCCCATCCAACTCTCCGGCGCCTTCACCTTCCGCG
TCTTCATCGGCCACGCCGTCGGTCTCTCCCACCCCGTCCAGCGCTGTTGT
CGTTCCCCTCGGAGGCGTGTGTACTCCCACGGATACATGCGAAGCTGGAA
CGGCGTGCTCTTGCACTGGATTCTGCTCCACCATCATCTCCATTGAGATT
GAGGCGCTTGCAGATGATGGTGTCGTGCCGATGATGTGCGGAACGGAACT
TGGTCCGCCCACTCCTGATAATATTGTTGCTGGAAGCTACACGTACAACG
GCGTTTGCGATGACCTGTACTACCGCGTATCGAACTCTGGTGGTATCTGG
GAGGCCTTGATTACCGCCGTTCGCGATGTGAACACCAACACGTGGTATCC
TTCCGTTCTGCCACCAGACTCTGGTATCACCGCTATCGTGACGAAGAATC
CGCCCAACACTGACTTCTTCACCGATCCTGCGTACGACTTTAGCGGTTGG
ACCCCGGCGCTGCAGCACACGGAGTTCATCTCCACGTACGCGGAGTACAT
TGCCTTCCAGAATACGTATGGAGGCCTTATCTGGACTTTTGATAACTTTC
GGCATCCGCGGGGTGACGAAGGTCTTACGTACTACAGGGTCATTCTTCCC
TTCTGCTAA
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protein sequence of Gchil2669.t1

>Gchil2669.t1 ID=Gchil2669.t1|Name=Gchil2669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=503bp
MILHAFVTAALLAFASAHCIYTDTECVCTQAQAGRTCLRYYSGSGASTKC
ETYECGSGFVCDCAGFEMCDITDCSLMRTVYRPIGAAPSAFGAIVDCELA
TQVTCVTPRNELAPTPSSSSSPAPSMSSSPGPSSSSSPAPSSSSSPAPSM
SSSSAPSMSSSPAPSMSSSPAPSSSSSPAPSMSSSPAPSMSSSPAPSMSS
SPAPSSSSSPVPSSSSSPIPSASSSPAASASSSPAPSLSSSPAPSLSSSP
APSLSSSPVPSASSSPAPSASASPSASASATPSASASPTPSNSPAPSPSA
SSSATPSVSPTPSSAVVVPLGGVCTPTDTCEAGTACSCTGFCSTIISIEI
EALADDGVVPMMCGTELGPPTPDNIVAGSYTYNGVCDDLYYRVSNSGGIW
EALITAVRDVNTNTWYPSVLPPDSGITAIVTKNPPNTDFFTDPAYDFSGW
TPALQHTEFISTYAEYIAFQNTYGGLIWTFDNFRHPRGDEGLTYYRVILP
FC*
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mRNA from alignment at tig00004400_pilon:2315954..2317554-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2669.t1 ID=Gchil2669.t1|Name=Gchil2669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1601bp|location=Sequence derived from alignment at tig00004400_pilon:2315954..2317554- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCTTCACGCCTTCGTCACCGCCGCGCTGTTGGCCTTTGCCTCCGC
CCATTGCATCTACACCGACACCGAATGCGTCTGCACCCAAGCGCAGGCCG
GTCGAACCTGCCTTCGCTACTACAGCGGCTCCGGGGCCTCCACCAAGTGC
GAGACCTATGAATGCGGCTCTGGTTTCGTTTGTGATTGTACGTCCGCACA
AGCCCGTTTCATCCCCCTCCCTTAGCTTCATCACCACTAACATCGTCTAA
CTTTTGTGCCCTTTTGCAACCCACCCCAGGTGCCGGATTTGAAATGTGCG
ATATTACTGATTGCAGCCTCATGCGTACCGTGTATCGCCCCATCGGCGCT
GCCCCGTCTGCGTTTGGTGCGATTGTTGACTGCGAGCTAGCCACCCAGGT
GACCTGTGTCACTCCCCGCAACGAGTTGGCTCCCACTCCCAGCTCGTCCT
CTTCACCGGCACCGTCGATGTCGTCATCCCCAGGCCCGTCTTCATCCTCC
TCGCCGGCACCATCTTCTTCTTCTTCGCCGGCACCGTCGATGTCTTCGTC
CTCGGCACCTTCGATGTCTTCCTCCCCGGCACCTTCGATGTCTTCCTCCC
CGGCGCCATCGTCTTCTTCTTCGCCGGCACCGTCGATGTCTTCGTCCCCA
GCACCTTCGATGTCTTCGTCCCCAGCACCTTCGATGTCTTCCTCCCCGGC
ACCGTCTTCGTCTTCATCACCTGTGCCATCGTCCTCTTCTTCACCGATAC
CTTCAGCGTCTTCATCGCCGGCAGCTTCAGCGTCCTCCTCGCCGGCTCCT
TCGTTGTCCTCCTCGCCGGCTCCTTCGCTGTCCTCCTCGCCGGCTCCTTC
GCTGTCCTCCTCGCCGGTGCCTTCGGCTTCCTCCTCCCCGGCTCCATCCG
CATCCGCATCTCCGTCTGCGAGCGCGTCAGCCACGCCCTCCGCCTCGGCT
TCGCCCACCCCATCCAACTCTCCGGCGCCTTCACCTTCCGCGTCTTCATC
GGCCACGCCGTCGGTCTCTCCCACCCCGTCCAGCGCTGTTGTCGTTCCCC
TCGGAGGCGTGTGTACTCCCACGGATACATGCGAAGCTGGAACGGCGTGC
TCTTGCACTGGATTCTGCTCCACCATCATCTCCATTGAGATTGAGGCGCT
TGCAGATGATGGTGTCGTGCCGATGATGTGCGGAACGGAACTTGGTCCGC
CCACTCCTGATAATATTGTTGCTGGAAGCTACACGTACAACGGCGTTTGC
GATGACCTGTACTACCGCGTATCGAACTCTGGTGGTATCTGGGAGGCCTT
GATTACCGCCGTTCGCGATGTGAACACCAACACGTGGTATCCTTCCGTTC
TGCCACCAGACTCTGGTATCACCGCTATCGTGACGAAGAATCCGCCCAAC
ACTGACTTCTTCACCGATCCTGCGTACGACTTTAGCGGTTGGACCCCGGC
GCTGCAGCACACGGAGTTCATCTCCACGTACGCGGAGTACATTGCCTTCC
AGAATACGTATGGAGGCCTTATCTGGACTTTTGATAACTTTCGGCATCCG
CGGGGTGACGAAGGTCTTACGTACTACAGGGTCATTCTTCCCTTCTGCTA
A
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Coding sequence (CDS) from alignment at tig00004400_pilon:2315954..2317554-

>Gchil2669.t1 ID=Gchil2669.t1|Name=Gchil2669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00004400_pilon:2315954..2317554- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCTTCACGCCTTCGTCACCGCCGCGCTGTTGGCCTTTGCCTCCGC
CCATTGCATCTACACCGACACCGAATGCGTCTGCACCCAAGCGCAGGCCG
GTCGAACCTGCCTTCGCTACTACAGCGGCTCCGGGGCCTCCACCAAGTGC
GAGACCTATGAATGCGGCTCTGGTTTCGTTTGTGATTGTGCCGGATTTGA
AATGTGCGATATTACTGATTGCAGCCTCATGCGTACCGTGTATCGCCCCA
TCGGCGCTGCCCCGTCTGCGTTTGGTGCGATTGTTGACTGCGAGCTAGCC
ACCCAGGTGACCTGTGTCACTCCCCGCAACGAGTTGGCTCCCACTCCCAG
CTCGTCCTCTTCACCGGCACCGTCGATGTCGTCATCCCCAGGCCCGTCTT
CATCCTCCTCGCCGGCACCATCTTCTTCTTCTTCGCCGGCACCGTCGATG
TCTTCGTCCTCGGCACCTTCGATGTCTTCCTCCCCGGCACCTTCGATGTC
TTCCTCCCCGGCGCCATCGTCTTCTTCTTCGCCGGCACCGTCGATGTCTT
CGTCCCCAGCACCTTCGATGTCTTCGTCCCCAGCACCTTCGATGTCTTCC
TCCCCGGCACCGTCTTCGTCTTCATCACCTGTGCCATCGTCCTCTTCTTC
ACCGATACCTTCAGCGTCTTCATCGCCGGCAGCTTCAGCGTCCTCCTCGC
CGGCTCCTTCGTTGTCCTCCTCGCCGGCTCCTTCGCTGTCCTCCTCGCCG
GCTCCTTCGCTGTCCTCCTCGCCGGTGCCTTCGGCTTCCTCCTCCCCGGC
TCCATCCGCATCCGCATCTCCGTCTGCGAGCGCGTCAGCCACGCCCTCCG
CCTCGGCTTCGCCCACCCCATCCAACTCTCCGGCGCCTTCACCTTCCGCG
TCTTCATCGGCCACGCCGTCGGTCTCTCCCACCCCGTCCAGCGCTGTTGT
CGTTCCCCTCGGAGGCGTGTGTACTCCCACGGATACATGCGAAGCTGGAA
CGGCGTGCTCTTGCACTGGATTCTGCTCCACCATCATCTCCATTGAGATT
GAGGCGCTTGCAGATGATGGTGTCGTGCCGATGATGTGCGGAACGGAACT
TGGTCCGCCCACTCCTGATAATATTGTTGCTGGAAGCTACACGTACAACG
GCGTTTGCGATGACCTGTACTACCGCGTATCGAACTCTGGTGGTATCTGG
GAGGCCTTGATTACCGCCGTTCGCGATGTGAACACCAACACGTGGTATCC
TTCCGTTCTGCCACCAGACTCTGGTATCACCGCTATCGTGACGAAGAATC
CGCCCAACACTGACTTCTTCACCGATCCTGCGTACGACTTTAGCGGTTGG
ACCCCGGCGCTGCAGCACACGGAGTTCATCTCCACGTACGCGGAGTACAT
TGCCTTCCAGAATACGTATGGAGGCCTTATCTGGACTTTTGATAACTTTC
GGCATCCGCGGGGTGACGAAGGTCTTACGTACTACAGGGTCATTCTTCCC
TTCTGCTAA
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