Gchil2662.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2662.t1
Unique NameGchil2662.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2292016..2293557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT541CT
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue3.04e-83
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2662Gchil2662Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2292016..2293557 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2662.t1.stop1Gchil2662.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2292016..2292018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2662.t1.CDS1Gchil2662.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2292016..2293557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2662.t1.exon1Gchil2662.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2292016..2293557 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2662.t1.start1Gchil2662.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2293555..2293557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2662.t1Gchil2662.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2292016..2293557 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2662.t1 ID=Gchil2662.t1|Name=Gchil2662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=514bp
MPAVAMSLDGAMSLDGANVRVCAFSHLGQAASPFSAWHRNCASFSVRHRH
VALSAKRPRVRCALRDRHDVDGEEQRAQRRLPHSSAAEPKSFLNRRKFIA
MVAAATLVALPGPPPSTNAVELAPTPINPYAKRRREKAYQRYAEQLEQSL
EKVAVADFDKVVKAGGGGIRVSYRIAGFAAFVASAISTAIVHPIDSIKTR
LQARAARLTESDSHLFENLYRGIFSNVLKEAPNAAIYLGVYELCKSFLTN
LSFTSFFHEMPLITFMVAGALGDAIGSVVRVPAEIVNKRLQIGVNSSWGS
ALRDAFLTPSGRQASAVAWQAVLLRDVPYGGLQIMLYEFGKLVLLNHPDM
FNGYFAHGGITVDVFVGAVAGALAAMITTPADVLVTRLSVSEASAQPETG
SPGVMATARHILLTEGVMGFFRGTLQRGAYYAPLIGLFFALYEFSRQSLS
DPNAFMASVMNLERIVLADWNALPVHLSHAYQSIVPYLTPFTWLLSDQLP
LLLSLVSMNASQL*
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spliced messenger RNA

>Gchil2662.t1 ID=Gchil2662.t1|Name=Gchil2662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004400_pilon:2292016..2293557- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCTGTCGCCATGTCTTTGGACGGGGCCATGTCTTTGGACGGGGC
CAATGTGCGCGTGTGCGCTTTTTCCCACCTTGGACAGGCTGCTTCTCCGT
TTAGCGCGTGGCATCGCAATTGCGCCTCGTTTTCCGTGCGCCACCGCCAT
GTTGCATTATCCGCGAAGCGACCGCGCGTTCGCTGCGCGCTCCGAGACCG
TCATGATGTGGACGGGGAGGAACAACGAGCTCAGCGCCGCTTGCCGCATT
CATCTGCTGCTGAACCCAAATCATTTTTGAACCGTCGCAAGTTCATCGCT
ATGGTAGCTGCTGCCACCTTGGTCGCGCTTCCAGGCCCTCCTCCCTCTAC
GAATGCCGTTGAACTCGCGCCCACTCCAATTAATCCGTATGCGAAACGTC
GTCGCGAAAAGGCATATCAGCGATATGCTGAGCAGCTTGAACAAAGTCTT
GAAAAGGTTGCGGTCGCCGACTTTGATAAGGTCGTCAAGGCCGGCGGTGG
TGGCATTCGTGTCAGCTATCGAATTGCCGGTTTTGCCGCCTTCGTTGCCA
GTGCCATCTCCACGGCCATTGTACATCCAATTGATAGCATCAAAACGAGG
CTTCAAGCCAGAGCGGCCCGTCTTACCGAAAGCGATTCGCACTTGTTCGA
AAACCTCTACAGGGGCATCTTCAGCAACGTACTCAAGGAAGCGCCCAATG
CTGCAATCTACTTGGGTGTGTACGAGCTGTGCAAGTCCTTTTTAACCAAC
TTATCTTTCACATCATTCTTTCATGAGATGCCACTGATCACTTTCATGGT
TGCAGGTGCATTAGGCGATGCGATTGGAAGCGTCGTCAGAGTTCCAGCCG
AAATCGTTAACAAGCGCTTGCAAATTGGTGTCAATTCATCCTGGGGTTCT
GCGCTTCGAGATGCCTTTCTCACCCCTTCCGGTCGACAAGCCTCTGCCGT
CGCATGGCAAGCTGTTCTTCTTCGCGACGTTCCATATGGAGGGCTGCAAA
TTATGTTGTACGAGTTTGGAAAGCTGGTGCTCTTGAACCACCCGGATATG
TTTAATGGTTATTTCGCTCATGGTGGCATCACGGTAGATGTCTTTGTAGG
TGCAGTTGCAGGGGCCCTGGCTGCCATGATTACCACACCGGCTGATGTCC
TTGTCACTCGTCTTAGCGTGAGCGAAGCCTCAGCCCAGCCAGAGACTGGG
TCTCCAGGCGTCATGGCCACTGCCAGACATATCTTGCTCACGGAAGGTGT
CATGGGTTTTTTCAGAGGCACGTTGCAAAGAGGGGCATATTACGCCCCTC
TCATAGGCCTCTTTTTTGCTCTTTATGAATTCAGTCGGCAGTCTTTGTCG
GATCCAAACGCTTTCATGGCTTCTGTTATGAATTTGGAGAGAATAGTGTT
GGCTGATTGGAATGCACTACCCGTTCATCTTTCACATGCTTACCAGAGCA
TTGTACCTTATTTAACCCCGTTTACCTGGCTCCTTTCGGACCAGTTGCCA
TTGCTTTTGAGTTTGGTTTCCATGAACGCGAGCCAGTTGTAG
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protein sequence of Gchil2662.t1

>Gchil2662.t1 ID=Gchil2662.t1|Name=Gchil2662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=514bp
MPAVAMSLDGAMSLDGANVRVCAFSHLGQAASPFSAWHRNCASFSVRHRH
VALSAKRPRVRCALRDRHDVDGEEQRAQRRLPHSSAAEPKSFLNRRKFIA
MVAAATLVALPGPPPSTNAVELAPTPINPYAKRRREKAYQRYAEQLEQSL
EKVAVADFDKVVKAGGGGIRVSYRIAGFAAFVASAISTAIVHPIDSIKTR
LQARAARLTESDSHLFENLYRGIFSNVLKEAPNAAIYLGVYELCKSFLTN
LSFTSFFHEMPLITFMVAGALGDAIGSVVRVPAEIVNKRLQIGVNSSWGS
ALRDAFLTPSGRQASAVAWQAVLLRDVPYGGLQIMLYEFGKLVLLNHPDM
FNGYFAHGGITVDVFVGAVAGALAAMITTPADVLVTRLSVSEASAQPETG
SPGVMATARHILLTEGVMGFFRGTLQRGAYYAPLIGLFFALYEFSRQSLS
DPNAFMASVMNLERIVLADWNALPVHLSHAYQSIVPYLTPFTWLLSDQLP
LLLSLVSMNASQL*
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mRNA from alignment at tig00004400_pilon:2292016..2293557-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2662.t1 ID=Gchil2662.t1|Name=Gchil2662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004400_pilon:2292016..2293557- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCTGTCGCCATGTCTTTGGACGGGGCCATGTCTTTGGACGGGGC
CAATGTGCGCGTGTGCGCTTTTTCCCACCTTGGACAGGCTGCTTCTCCGT
TTAGCGCGTGGCATCGCAATTGCGCCTCGTTTTCCGTGCGCCACCGCCAT
GTTGCATTATCCGCGAAGCGACCGCGCGTTCGCTGCGCGCTCCGAGACCG
TCATGATGTGGACGGGGAGGAACAACGAGCTCAGCGCCGCTTGCCGCATT
CATCTGCTGCTGAACCCAAATCATTTTTGAACCGTCGCAAGTTCATCGCT
ATGGTAGCTGCTGCCACCTTGGTCGCGCTTCCAGGCCCTCCTCCCTCTAC
GAATGCCGTTGAACTCGCGCCCACTCCAATTAATCCGTATGCGAAACGTC
GTCGCGAAAAGGCATATCAGCGATATGCTGAGCAGCTTGAACAAAGTCTT
GAAAAGGTTGCGGTCGCCGACTTTGATAAGGTCGTCAAGGCCGGCGGTGG
TGGCATTCGTGTCAGCTATCGAATTGCCGGTTTTGCCGCCTTCGTTGCCA
GTGCCATCTCCACGGCCATTGTACATCCAATTGATAGCATCAAAACGAGG
CTTCAAGCCAGAGCGGCCCGTCTTACCGAAAGCGATTCGCACTTGTTCGA
AAACCTCTACAGGGGCATCTTCAGCAACGTACTCAAGGAAGCGCCCAATG
CTGCAATCTACTTGGGTGTGTACGAGCTGTGCAAGTCCTTTTTAACCAAC
TTATCTTTCACATCATTCTTTCATGAGATGCCACTGATCACTTTCATGGT
TGCAGGTGCATTAGGCGATGCGATTGGAAGCGTCGTCAGAGTTCCAGCCG
AAATCGTTAACAAGCGCTTGCAAATTGGTGTCAATTCATCCTGGGGTTCT
GCGCTTCGAGATGCCTTTCTCACCCCTTCCGGTCGACAAGCCTCTGCCGT
CGCATGGCAAGCTGTTCTTCTTCGCGACGTTCCATATGGAGGGCTGCAAA
TTATGTTGTACGAGTTTGGAAAGCTGGTGCTCTTGAACCACCCGGATATG
TTTAATGGTTATTTCGCTCATGGTGGCATCACGGTAGATGTCTTTGTAGG
TGCAGTTGCAGGGGCCCTGGCTGCCATGATTACCACACCGGCTGATGTCC
TTGTCACTCGTCTTAGCGTGAGCGAAGCCTCAGCCCAGCCAGAGACTGGG
TCTCCAGGCGTCATGGCCACTGCCAGACATATCTTGCTCACGGAAGGTGT
CATGGGTTTTTTCAGAGGCACGTTGCAAAGAGGGGCATATTACGCCCCTC
TCATAGGCCTCTTTTTTGCTCTTTATGAATTCAGTCGGCAGTCTTTGTCG
GATCCAAACGCTTTCATGGCTTCTGTTATGAATTTGGAGAGAATAGTGTT
GGCTGATTGGAATGCACTACCCGTTCATCTTTCACATGCTTACCAGAGCA
TTGTACCTTATTTAACCCCGTTTACCTGGCTCCTTTCGGACCAGTTGCCA
TTGCTTTTGAGTTTGGTTTCCATGAACGCGAGCCAGTTGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:2292016..2293557-

>Gchil2662.t1 ID=Gchil2662.t1|Name=Gchil2662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1542bp|location=Sequence derived from alignment at tig00004400_pilon:2292016..2293557- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCTGTCGCCATGTCTTTGGACGGGGCCATGTCTTTGGACGGGGC
CAATGTGCGCGTGTGCGCTTTTTCCCACCTTGGACAGGCTGCTTCTCCGT
TTAGCGCGTGGCATCGCAATTGCGCCTCGTTTTCCGTGCGCCACCGCCAT
GTTGCATTATCCGCGAAGCGACCGCGCGTTCGCTGCGCGCTCCGAGACCG
TCATGATGTGGACGGGGAGGAACAACGAGCTCAGCGCCGCTTGCCGCATT
CATCTGCTGCTGAACCCAAATCATTTTTGAACCGTCGCAAGTTCATCGCT
ATGGTAGCTGCTGCCACCTTGGTCGCGCTTCCAGGCCCTCCTCCCTCTAC
GAATGCCGTTGAACTCGCGCCCACTCCAATTAATCCGTATGCGAAACGTC
GTCGCGAAAAGGCATATCAGCGATATGCTGAGCAGCTTGAACAAAGTCTT
GAAAAGGTTGCGGTCGCCGACTTTGATAAGGTCGTCAAGGCCGGCGGTGG
TGGCATTCGTGTCAGCTATCGAATTGCCGGTTTTGCCGCCTTCGTTGCCA
GTGCCATCTCCACGGCCATTGTACATCCAATTGATAGCATCAAAACGAGG
CTTCAAGCCAGAGCGGCCCGTCTTACCGAAAGCGATTCGCACTTGTTCGA
AAACCTCTACAGGGGCATCTTCAGCAACGTACTCAAGGAAGCGCCCAATG
CTGCAATCTACTTGGGTGTGTACGAGCTGTGCAAGTCCTTTTTAACCAAC
TTATCTTTCACATCATTCTTTCATGAGATGCCACTGATCACTTTCATGGT
TGCAGGTGCATTAGGCGATGCGATTGGAAGCGTCGTCAGAGTTCCAGCCG
AAATCGTTAACAAGCGCTTGCAAATTGGTGTCAATTCATCCTGGGGTTCT
GCGCTTCGAGATGCCTTTCTCACCCCTTCCGGTCGACAAGCCTCTGCCGT
CGCATGGCAAGCTGTTCTTCTTCGCGACGTTCCATATGGAGGGCTGCAAA
TTATGTTGTACGAGTTTGGAAAGCTGGTGCTCTTGAACCACCCGGATATG
TTTAATGGTTATTTCGCTCATGGTGGCATCACGGTAGATGTCTTTGTAGG
TGCAGTTGCAGGGGCCCTGGCTGCCATGATTACCACACCGGCTGATGTCC
TTGTCACTCGTCTTAGCGTGAGCGAAGCCTCAGCCCAGCCAGAGACTGGG
TCTCCAGGCGTCATGGCCACTGCCAGACATATCTTGCTCACGGAAGGTGT
CATGGGTTTTTTCAGAGGCACGTTGCAAAGAGGGGCATATTACGCCCCTC
TCATAGGCCTCTTTTTTGCTCTTTATGAATTCAGTCGGCAGTCTTTGTCG
GATCCAAACGCTTTCATGGCTTCTGTTATGAATTTGGAGAGAATAGTGTT
GGCTGATTGGAATGCACTACCCGTTCATCTTTCACATGCTTACCAGAGCA
TTGTACCTTATTTAACCCCGTTTACCTGGCTCCTTTCGGACCAGTTGCCA
TTGCTTTTGAGTTTGGTTTCCATGAACGCGAGCCAGTTGTAG
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