Gchil2660.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2660.t1
Unique NameGchil2660.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2228567..2229814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005650543.1
PFAMsRabGAP-TBC
Max annot lvl3041|Chlorophyta
Evalue1.11e-63
EggNOG OGsCOG5210@1|root,KOG4567@2759|Eukaryota,37IC9@33090|Viridiplantae,34HQ2@3041|Chlorophyta
DescriptionDomain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2660Gchil2660Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2228567..2229814 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2660.t1.stop1Gchil2660.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2228567..2228569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2660.t1.CDS1Gchil2660.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2228567..2229814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2660.t1.exon1Gchil2660.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2228567..2229814 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2660.t1.start1Gchil2660.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2229812..2229814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2660.t1Gchil2660.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2228567..2229814 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2660.t1 ID=Gchil2660.t1|Name=Gchil2660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=416bp
MGSARQVELVDLANVRHRRSLPPSYPTAGPIAPPPPPPPDSPVVDSSTDI
ISAQIRHALTGVPLAPLSHSPSASSISSLSIPSTTHLQPETREQLFRACL
RSPTVDVDELRRLVWAHGIPPAPWARPLVWQLLTDYLPPDRVDWQPTLAS
RRARYWARVASFSVDPTERPVHGDHPLSDAQDSQWKRYFDDCHLRTCIRR
DVLRTHPDLHRLAPLRDGLERVLFVYVKLHPKLGYRQGMNELAAPFLLTF
AEGRVKDLSDVEADAYFCFESIMSETATCYEPSDSDNAGIGRQMRELQAL
LRIKDPALERHFEKLGIDTRFYGLRWIRLWLMQEFVLPDCLCLWDSFLTS
EVRLPWIRYVCVAMAIRIRERLLAADFAGCMKLLLNYPPCDVSELLRIAD
RLRTSNVIIVRTARR*
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spliced messenger RNA

>Gchil2660.t1 ID=Gchil2660.t1|Name=Gchil2660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00004400_pilon:2228567..2229814- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCCGCGCGTCAGGTTGAACTCGTTGACCTCGCCAACGTGCGTCA
CCGTCGTTCTCTCCCGCCGTCGTATCCCACCGCCGGCCCCATTGCGCCGC
CGCCTCCACCGCCGCCTGACAGCCCTGTTGTCGACTCGTCCACTGACATC
ATCTCTGCGCAGATTCGCCACGCCCTCACCGGTGTCCCGCTCGCCCCCCT
ATCCCACTCACCTTCCGCCTCGTCCATTTCCAGTCTTTCCATCCCATCCA
CTACCCACTTGCAGCCTGAGACGCGCGAGCAACTGTTTCGGGCCTGTCTG
CGCTCCCCCACGGTCGACGTTGATGAGTTGCGCCGCCTTGTGTGGGCGCA
CGGCATCCCGCCTGCGCCGTGGGCGAGACCACTCGTCTGGCAGTTGCTCA
CAGACTACTTGCCGCCCGATCGTGTCGACTGGCAACCCACGTTGGCGTCC
AGGCGAGCTCGTTACTGGGCACGCGTTGCCAGTTTCAGCGTGGACCCCAC
CGAGCGCCCAGTGCACGGTGACCATCCCTTGAGCGACGCCCAAGATAGTC
AGTGGAAACGATATTTTGACGACTGTCATCTTCGAACATGCATACGTCGA
GATGTACTACGCACACATCCTGATCTACACCGTCTTGCTCCGCTGCGCGA
CGGTTTGGAGCGCGTGTTGTTTGTCTACGTCAAATTGCACCCCAAACTGG
GCTATCGACAAGGAATGAACGAACTTGCAGCGCCGTTTTTGCTGACGTTT
GCAGAAGGCCGCGTCAAGGATTTGTCCGACGTAGAGGCCGATGCTTATTT
TTGCTTTGAGAGCATCATGTCCGAGACTGCCACCTGTTATGAGCCTTCTG
ATTCGGACAACGCCGGCATTGGCCGTCAAATGCGAGAGCTTCAGGCCTTG
TTGCGCATTAAAGACCCTGCCTTGGAGCGTCATTTTGAAAAGCTTGGCAT
CGATACGCGCTTTTACGGGCTGCGATGGATCCGTCTGTGGCTCATGCAAG
AGTTTGTGTTACCAGACTGTTTATGTCTATGGGACAGCTTTCTTACCTCG
GAAGTACGCCTCCCATGGATCCGCTACGTGTGTGTTGCCATGGCTATCCG
AATCCGCGAACGCCTTCTCGCAGCGGATTTTGCTGGCTGCATGAAGTTAC
TCCTGAACTATCCACCCTGTGACGTTTCTGAGTTGTTGCGCATTGCTGAT
AGGCTGCGTACGTCTAATGTCATCATTGTAAGAACAGCTAGAAGATAA
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protein sequence of Gchil2660.t1

>Gchil2660.t1 ID=Gchil2660.t1|Name=Gchil2660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=416bp
MGSARQVELVDLANVRHRRSLPPSYPTAGPIAPPPPPPPDSPVVDSSTDI
ISAQIRHALTGVPLAPLSHSPSASSISSLSIPSTTHLQPETREQLFRACL
RSPTVDVDELRRLVWAHGIPPAPWARPLVWQLLTDYLPPDRVDWQPTLAS
RRARYWARVASFSVDPTERPVHGDHPLSDAQDSQWKRYFDDCHLRTCIRR
DVLRTHPDLHRLAPLRDGLERVLFVYVKLHPKLGYRQGMNELAAPFLLTF
AEGRVKDLSDVEADAYFCFESIMSETATCYEPSDSDNAGIGRQMRELQAL
LRIKDPALERHFEKLGIDTRFYGLRWIRLWLMQEFVLPDCLCLWDSFLTS
EVRLPWIRYVCVAMAIRIRERLLAADFAGCMKLLLNYPPCDVSELLRIAD
RLRTSNVIIVRTARR*
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mRNA from alignment at tig00004400_pilon:2228567..2229814-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2660.t1 ID=Gchil2660.t1|Name=Gchil2660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00004400_pilon:2228567..2229814- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTCCGCGCGTCAGGTTGAACTCGTTGACCTCGCCAACGTGCGTCA
CCGTCGTTCTCTCCCGCCGTCGTATCCCACCGCCGGCCCCATTGCGCCGC
CGCCTCCACCGCCGCCTGACAGCCCTGTTGTCGACTCGTCCACTGACATC
ATCTCTGCGCAGATTCGCCACGCCCTCACCGGTGTCCCGCTCGCCCCCCT
ATCCCACTCACCTTCCGCCTCGTCCATTTCCAGTCTTTCCATCCCATCCA
CTACCCACTTGCAGCCTGAGACGCGCGAGCAACTGTTTCGGGCCTGTCTG
CGCTCCCCCACGGTCGACGTTGATGAGTTGCGCCGCCTTGTGTGGGCGCA
CGGCATCCCGCCTGCGCCGTGGGCGAGACCACTCGTCTGGCAGTTGCTCA
CAGACTACTTGCCGCCCGATCGTGTCGACTGGCAACCCACGTTGGCGTCC
AGGCGAGCTCGTTACTGGGCACGCGTTGCCAGTTTCAGCGTGGACCCCAC
CGAGCGCCCAGTGCACGGTGACCATCCCTTGAGCGACGCCCAAGATAGTC
AGTGGAAACGATATTTTGACGACTGTCATCTTCGAACATGCATACGTCGA
GATGTACTACGCACACATCCTGATCTACACCGTCTTGCTCCGCTGCGCGA
CGGTTTGGAGCGCGTGTTGTTTGTCTACGTCAAATTGCACCCCAAACTGG
GCTATCGACAAGGAATGAACGAACTTGCAGCGCCGTTTTTGCTGACGTTT
GCAGAAGGCCGCGTCAAGGATTTGTCCGACGTAGAGGCCGATGCTTATTT
TTGCTTTGAGAGCATCATGTCCGAGACTGCCACCTGTTATGAGCCTTCTG
ATTCGGACAACGCCGGCATTGGCCGTCAAATGCGAGAGCTTCAGGCCTTG
TTGCGCATTAAAGACCCTGCCTTGGAGCGTCATTTTGAAAAGCTTGGCAT
CGATACGCGCTTTTACGGGCTGCGATGGATCCGTCTGTGGCTCATGCAAG
AGTTTGTGTTACCAGACTGTTTATGTCTATGGGACAGCTTTCTTACCTCG
GAAGTACGCCTCCCATGGATCCGCTACGTGTGTGTTGCCATGGCTATCCG
AATCCGCGAACGCCTTCTCGCAGCGGATTTTGCTGGCTGCATGAAGTTAC
TCCTGAACTATCCACCCTGTGACGTTTCTGAGTTGTTGCGCATTGCTGAT
AGGCTGCGTACGTCTAATGTCATCATTGTAAGAACAGCTAGAAGATAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2228567..2229814-

>Gchil2660.t1 ID=Gchil2660.t1|Name=Gchil2660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00004400_pilon:2228567..2229814- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTCCGCGCGTCAGGTTGAACTCGTTGACCTCGCCAACGTGCGTCA
CCGTCGTTCTCTCCCGCCGTCGTATCCCACCGCCGGCCCCATTGCGCCGC
CGCCTCCACCGCCGCCTGACAGCCCTGTTGTCGACTCGTCCACTGACATC
ATCTCTGCGCAGATTCGCCACGCCCTCACCGGTGTCCCGCTCGCCCCCCT
ATCCCACTCACCTTCCGCCTCGTCCATTTCCAGTCTTTCCATCCCATCCA
CTACCCACTTGCAGCCTGAGACGCGCGAGCAACTGTTTCGGGCCTGTCTG
CGCTCCCCCACGGTCGACGTTGATGAGTTGCGCCGCCTTGTGTGGGCGCA
CGGCATCCCGCCTGCGCCGTGGGCGAGACCACTCGTCTGGCAGTTGCTCA
CAGACTACTTGCCGCCCGATCGTGTCGACTGGCAACCCACGTTGGCGTCC
AGGCGAGCTCGTTACTGGGCACGCGTTGCCAGTTTCAGCGTGGACCCCAC
CGAGCGCCCAGTGCACGGTGACCATCCCTTGAGCGACGCCCAAGATAGTC
AGTGGAAACGATATTTTGACGACTGTCATCTTCGAACATGCATACGTCGA
GATGTACTACGCACACATCCTGATCTACACCGTCTTGCTCCGCTGCGCGA
CGGTTTGGAGCGCGTGTTGTTTGTCTACGTCAAATTGCACCCCAAACTGG
GCTATCGACAAGGAATGAACGAACTTGCAGCGCCGTTTTTGCTGACGTTT
GCAGAAGGCCGCGTCAAGGATTTGTCCGACGTAGAGGCCGATGCTTATTT
TTGCTTTGAGAGCATCATGTCCGAGACTGCCACCTGTTATGAGCCTTCTG
ATTCGGACAACGCCGGCATTGGCCGTCAAATGCGAGAGCTTCAGGCCTTG
TTGCGCATTAAAGACCCTGCCTTGGAGCGTCATTTTGAAAAGCTTGGCAT
CGATACGCGCTTTTACGGGCTGCGATGGATCCGTCTGTGGCTCATGCAAG
AGTTTGTGTTACCAGACTGTTTATGTCTATGGGACAGCTTTCTTACCTCG
GAAGTACGCCTCCCATGGATCCGCTACGTGTGTGTTGCCATGGCTATCCG
AATCCGCGAACGCCTTCTCGCAGCGGATTTTGCTGGCTGCATGAAGTTAC
TCCTGAACTATCCACCCTGTGACGTTTCTGAGTTGTTGCGCATTGCTGAT
AGGCTGCGTACGTCTAATGTCATCATTGTAAGAACAGCTAGAAGATAA
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