Gchil2653.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2653.t1
Unique NameGchil2653.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2169304..2170866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000015332
Preferred nameCNDP2
PFAMsM20_dimer,Peptidase_M20
Max annot lvl33208|Metazoa
KEGG rclassRC00064,RC00090
KEGG koko:K08660
KEGG ReactionR01166,R01992
KEGG Pathwayko00330,ko00340,ko00410,ko01100,map00330,map00340,map00410,map01100
GOsGO:0003674,GO:0003824,GO:0004180,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009058,GO:0009987,GO:0016787,GO:0016805,GO:0019184,GO:0019538,GO:0031974,GO:0031981,GO:0034641,GO:0042398,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901566,GO:1901576
Evalue1.42e-153
EggNOG OGsCOG0624@1|root,KOG2276@2759|Eukaryota,38D4S@33154|Opisthokonta,3BE18@33208|Metazoa,3CXPG@33213|Bilateria,485KK@7711|Chordata,48X3M@7742|Vertebrata,49YEH@7898|Actinopterygii
EC3.4.13.18
DescriptionCNDP dipeptidase 2 (metallopeptidase M20 family)
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2653Gchil2653Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2169304..2170866 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2653.t1.stop1Gchil2653.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2169304..2169306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2653.t1.CDS1Gchil2653.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2169304..2170866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2653.t1.exon1Gchil2653.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2169304..2170866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2653.t1.start1Gchil2653.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2170864..2170866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2653.t1Gchil2653.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2169304..2170866 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2653.t1 ID=Gchil2653.t1|Name=Gchil2653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=521bp
MTQSTGESETMKSVDLFNEVRKVIASNADIYISRLAEAVAIQSVSTELSK
RNECFQMADLLNKWIEDLGGKSEKVLVGFQELDDGQRFDLPPVILAEFSM
EDTQKPTVLVYGHYDVQPAEKADGWSSEPFTLTEKNEMLHGRGSTDDKGP
ILAWLWAIEIYRELELELPVNLKFCLEGMEESNSECLEDLLAREAKPSGF
LEGVDFVVITDNYWLTTSKPCLTYGLRGLATFECEVRSGSQTLHSGVYGG
CIAEPMTDLIQLLSTVTKGGYGLIDIPGCRKEDCARLEEAEKELYQGISF
DSEDFKKEAGNVPALVGDTAPDVLMNRWRYPSLSIHGIEGAYSGQGLKTV
IPGAVTGKFSIRLVPGQDGKFVEEEVTKLLRERFLELRSPNELRVTSSSS
APWLANPKCPLYQAGAAALLKVYGVRPDLTREGGSIPITGMVEKIMGVDT
MLLPLGCSDDGAHSENEKIGRKNYLNGIHVLFVLLEEVNRVHRKRENIIS
DGKAKKGALGRLKDIWFGLS*
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spliced messenger RNA

>Gchil2653.t1 ID=Gchil2653.t1|Name=Gchil2653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004400_pilon:2169304..2170866- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAAAGCACGGGGGAAAGCGAGACCATGAAAAGCGTTGATCTTTT
CAATGAGGTTCGCAAGGTTATCGCTTCAAATGCTGATATCTACATCAGCC
GTTTGGCTGAGGCGGTTGCCATTCAATCTGTCTCCACTGAGCTCTCGAAA
CGGAATGAATGCTTTCAAATGGCTGACCTTCTGAATAAATGGATCGAGGA
CCTTGGAGGCAAATCAGAAAAAGTTCTTGTCGGTTTCCAAGAACTGGACG
ATGGCCAACGATTTGATCTTCCTCCTGTAATTCTTGCCGAATTTTCCATG
GAAGACACACAGAAGCCTACTGTCTTAGTTTATGGCCATTACGATGTCCA
ACCTGCTGAGAAAGCTGACGGCTGGTCATCAGAACCTTTTACTTTGACCG
AAAAGAATGAAATGCTGCACGGACGTGGTAGCACTGATGACAAAGGGCCA
ATTTTAGCATGGTTATGGGCAATCGAAATATACCGAGAGCTAGAATTGGA
ATTACCCGTGAACCTCAAGTTTTGCCTTGAAGGAATGGAGGAATCGAACA
GTGAATGTCTGGAAGACTTGCTCGCTCGTGAAGCGAAACCTAGTGGATTC
TTGGAAGGCGTTGATTTCGTCGTCATCACGGACAACTACTGGTTAACAAC
TAGTAAGCCATGCCTTACCTACGGCTTGCGAGGACTTGCAACCTTTGAAT
GCGAAGTTCGCTCTGGCTCTCAAACCTTGCATTCGGGTGTCTACGGAGGC
TGTATTGCCGAGCCGATGACAGATTTGATCCAGCTGTTGTCTACTGTGAC
AAAGGGTGGTTATGGGTTGATAGACATACCTGGCTGTCGAAAGGAGGACT
GCGCTCGGCTTGAAGAAGCTGAGAAAGAACTTTACCAGGGCATCAGCTTT
GACAGTGAAGATTTCAAGAAAGAAGCTGGAAACGTACCAGCCTTGGTTGG
TGATACAGCGCCTGATGTATTGATGAACAGGTGGAGATACCCCTCGCTAT
CCATTCATGGTATCGAAGGAGCTTATTCTGGACAAGGTCTGAAAACAGTG
ATCCCAGGGGCCGTGACGGGGAAGTTCTCCATCAGGCTTGTCCCTGGGCA
AGATGGAAAATTTGTGGAAGAAGAGGTGACGAAACTCTTACGGGAGCGAT
TCCTTGAACTCAGGAGTCCGAACGAGTTGCGAGTCACTAGTTCGTCCTCG
GCGCCCTGGTTAGCCAATCCGAAATGCCCGCTGTATCAGGCGGGAGCTGC
TGCCCTTCTAAAAGTATATGGTGTACGCCCAGACTTAACAAGGGAGGGTG
GCTCAATTCCAATCACAGGCATGGTGGAAAAAATTATGGGTGTCGACACA
ATGTTGTTACCTCTTGGTTGTTCAGACGATGGAGCACATTCGGAGAACGA
GAAGATAGGAAGAAAGAACTATCTAAACGGAATTCATGTGTTATTCGTCT
TGCTGGAGGAGGTTAATCGCGTCCATCGGAAGAGAGAAAACATCATCAGC
GACGGAAAAGCAAAGAAAGGCGCGCTGGGAAGGCTTAAAGACATTTGGTT
TGGACTATCTTGA
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protein sequence of Gchil2653.t1

>Gchil2653.t1 ID=Gchil2653.t1|Name=Gchil2653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=521bp
MTQSTGESETMKSVDLFNEVRKVIASNADIYISRLAEAVAIQSVSTELSK
RNECFQMADLLNKWIEDLGGKSEKVLVGFQELDDGQRFDLPPVILAEFSM
EDTQKPTVLVYGHYDVQPAEKADGWSSEPFTLTEKNEMLHGRGSTDDKGP
ILAWLWAIEIYRELELELPVNLKFCLEGMEESNSECLEDLLAREAKPSGF
LEGVDFVVITDNYWLTTSKPCLTYGLRGLATFECEVRSGSQTLHSGVYGG
CIAEPMTDLIQLLSTVTKGGYGLIDIPGCRKEDCARLEEAEKELYQGISF
DSEDFKKEAGNVPALVGDTAPDVLMNRWRYPSLSIHGIEGAYSGQGLKTV
IPGAVTGKFSIRLVPGQDGKFVEEEVTKLLRERFLELRSPNELRVTSSSS
APWLANPKCPLYQAGAAALLKVYGVRPDLTREGGSIPITGMVEKIMGVDT
MLLPLGCSDDGAHSENEKIGRKNYLNGIHVLFVLLEEVNRVHRKRENIIS
DGKAKKGALGRLKDIWFGLS*
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mRNA from alignment at tig00004400_pilon:2169304..2170866-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2653.t1 ID=Gchil2653.t1|Name=Gchil2653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004400_pilon:2169304..2170866- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCAAAGCACGGGGGAAAGCGAGACCATGAAAAGCGTTGATCTTTT
CAATGAGGTTCGCAAGGTTATCGCTTCAAATGCTGATATCTACATCAGCC
GTTTGGCTGAGGCGGTTGCCATTCAATCTGTCTCCACTGAGCTCTCGAAA
CGGAATGAATGCTTTCAAATGGCTGACCTTCTGAATAAATGGATCGAGGA
CCTTGGAGGCAAATCAGAAAAAGTTCTTGTCGGTTTCCAAGAACTGGACG
ATGGCCAACGATTTGATCTTCCTCCTGTAATTCTTGCCGAATTTTCCATG
GAAGACACACAGAAGCCTACTGTCTTAGTTTATGGCCATTACGATGTCCA
ACCTGCTGAGAAAGCTGACGGCTGGTCATCAGAACCTTTTACTTTGACCG
AAAAGAATGAAATGCTGCACGGACGTGGTAGCACTGATGACAAAGGGCCA
ATTTTAGCATGGTTATGGGCAATCGAAATATACCGAGAGCTAGAATTGGA
ATTACCCGTGAACCTCAAGTTTTGCCTTGAAGGAATGGAGGAATCGAACA
GTGAATGTCTGGAAGACTTGCTCGCTCGTGAAGCGAAACCTAGTGGATTC
TTGGAAGGCGTTGATTTCGTCGTCATCACGGACAACTACTGGTTAACAAC
TAGTAAGCCATGCCTTACCTACGGCTTGCGAGGACTTGCAACCTTTGAAT
GCGAAGTTCGCTCTGGCTCTCAAACCTTGCATTCGGGTGTCTACGGAGGC
TGTATTGCCGAGCCGATGACAGATTTGATCCAGCTGTTGTCTACTGTGAC
AAAGGGTGGTTATGGGTTGATAGACATACCTGGCTGTCGAAAGGAGGACT
GCGCTCGGCTTGAAGAAGCTGAGAAAGAACTTTACCAGGGCATCAGCTTT
GACAGTGAAGATTTCAAGAAAGAAGCTGGAAACGTACCAGCCTTGGTTGG
TGATACAGCGCCTGATGTATTGATGAACAGGTGGAGATACCCCTCGCTAT
CCATTCATGGTATCGAAGGAGCTTATTCTGGACAAGGTCTGAAAACAGTG
ATCCCAGGGGCCGTGACGGGGAAGTTCTCCATCAGGCTTGTCCCTGGGCA
AGATGGAAAATTTGTGGAAGAAGAGGTGACGAAACTCTTACGGGAGCGAT
TCCTTGAACTCAGGAGTCCGAACGAGTTGCGAGTCACTAGTTCGTCCTCG
GCGCCCTGGTTAGCCAATCCGAAATGCCCGCTGTATCAGGCGGGAGCTGC
TGCCCTTCTAAAAGTATATGGTGTACGCCCAGACTTAACAAGGGAGGGTG
GCTCAATTCCAATCACAGGCATGGTGGAAAAAATTATGGGTGTCGACACA
ATGTTGTTACCTCTTGGTTGTTCAGACGATGGAGCACATTCGGAGAACGA
GAAGATAGGAAGAAAGAACTATCTAAACGGAATTCATGTGTTATTCGTCT
TGCTGGAGGAGGTTAATCGCGTCCATCGGAAGAGAGAAAACATCATCAGC
GACGGAAAAGCAAAGAAAGGCGCGCTGGGAAGGCTTAAAGACATTTGGTT
TGGACTATCTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2169304..2170866-

>Gchil2653.t1 ID=Gchil2653.t1|Name=Gchil2653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00004400_pilon:2169304..2170866- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCAAAGCACGGGGGAAAGCGAGACCATGAAAAGCGTTGATCTTTT
CAATGAGGTTCGCAAGGTTATCGCTTCAAATGCTGATATCTACATCAGCC
GTTTGGCTGAGGCGGTTGCCATTCAATCTGTCTCCACTGAGCTCTCGAAA
CGGAATGAATGCTTTCAAATGGCTGACCTTCTGAATAAATGGATCGAGGA
CCTTGGAGGCAAATCAGAAAAAGTTCTTGTCGGTTTCCAAGAACTGGACG
ATGGCCAACGATTTGATCTTCCTCCTGTAATTCTTGCCGAATTTTCCATG
GAAGACACACAGAAGCCTACTGTCTTAGTTTATGGCCATTACGATGTCCA
ACCTGCTGAGAAAGCTGACGGCTGGTCATCAGAACCTTTTACTTTGACCG
AAAAGAATGAAATGCTGCACGGACGTGGTAGCACTGATGACAAAGGGCCA
ATTTTAGCATGGTTATGGGCAATCGAAATATACCGAGAGCTAGAATTGGA
ATTACCCGTGAACCTCAAGTTTTGCCTTGAAGGAATGGAGGAATCGAACA
GTGAATGTCTGGAAGACTTGCTCGCTCGTGAAGCGAAACCTAGTGGATTC
TTGGAAGGCGTTGATTTCGTCGTCATCACGGACAACTACTGGTTAACAAC
TAGTAAGCCATGCCTTACCTACGGCTTGCGAGGACTTGCAACCTTTGAAT
GCGAAGTTCGCTCTGGCTCTCAAACCTTGCATTCGGGTGTCTACGGAGGC
TGTATTGCCGAGCCGATGACAGATTTGATCCAGCTGTTGTCTACTGTGAC
AAAGGGTGGTTATGGGTTGATAGACATACCTGGCTGTCGAAAGGAGGACT
GCGCTCGGCTTGAAGAAGCTGAGAAAGAACTTTACCAGGGCATCAGCTTT
GACAGTGAAGATTTCAAGAAAGAAGCTGGAAACGTACCAGCCTTGGTTGG
TGATACAGCGCCTGATGTATTGATGAACAGGTGGAGATACCCCTCGCTAT
CCATTCATGGTATCGAAGGAGCTTATTCTGGACAAGGTCTGAAAACAGTG
ATCCCAGGGGCCGTGACGGGGAAGTTCTCCATCAGGCTTGTCCCTGGGCA
AGATGGAAAATTTGTGGAAGAAGAGGTGACGAAACTCTTACGGGAGCGAT
TCCTTGAACTCAGGAGTCCGAACGAGTTGCGAGTCACTAGTTCGTCCTCG
GCGCCCTGGTTAGCCAATCCGAAATGCCCGCTGTATCAGGCGGGAGCTGC
TGCCCTTCTAAAAGTATATGGTGTACGCCCAGACTTAACAAGGGAGGGTG
GCTCAATTCCAATCACAGGCATGGTGGAAAAAATTATGGGTGTCGACACA
ATGTTGTTACCTCTTGGTTGTTCAGACGATGGAGCACATTCGGAGAACGA
GAAGATAGGAAGAAAGAACTATCTAAACGGAATTCATGTGTTATTCGTCT
TGCTGGAGGAGGTTAATCGCGTCCATCGGAAGAGAGAAAACATCATCAGC
GACGGAAAAGCAAAGAAAGGCGCGCTGGGAAGGCTTAAAGACATTTGGTT
TGGACTATCTTGA
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