Gchil2652.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2652.t2
Unique NameGchil2652.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2166769..2167986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703053.1
PFAMsFerrochelatase
Max annot lvl2759|Eukaryota
KEGG rclassRC01012
KEGG koko:K01772
KEGG ReactionR00310,R11329
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue2.47e-159
EggNOG OGsCOG0276@1|root,KOG1321@2759|Eukaryota
EC4.99.1.1,4.99.1.9
Descriptionferrochelatase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2652Gchil2652Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2166769..2167986 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2652.t2.stop1Gchil2652.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2166769..2166771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2652.t2.CDS1Gchil2652.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2166769..2167986 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2652.t2.exon1Gchil2652.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2166769..2167986 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2652.t2.start1Gchil2652.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2167984..2167986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2652.t2Gchil2652.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2166769..2167986 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2652.t2 ID=Gchil2652.t2|Name=Gchil2652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=406bp
MAFVAPAPFTACIAQRRVNIPSRRPILATALESKTVAAPKIEKQAELGKE
RSPPFRGRTGILLVNIGTPASLSVPDVREYLRQFLGDSRVVDLNPIIKWV
VLNLFILRTRPKESAEAYSNIWDEERGSPLLFHSEDLAARLQNLLGEKYA
VAVGMQYCQPNVYDVMEELRARGTDRLIVVPMYPQYASSATGAAIEIVYK
AAAKVYSTPYLHIVPAFYDHPSYISAYAAIIKRKIGERCENYDHLLMSFH
GVPETHCERTDESGLLCNKQENCCAQIVQANRNCYRAQSFASARRIAEAC
DIPEGKYSISFQSRLSAAGPVWIQPYTDEELVKLAKAGVKKIAVVVPSFT
ADCLETLEEIGIRGKEDFIEAGGEILDLIPCLNSDEEWAKGMIQILKDSC
PMDTF*
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spliced messenger RNA

>Gchil2652.t2 ID=Gchil2652.t2|Name=Gchil2652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00004400_pilon:2166769..2167986- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTTGCACCAGCTCCTTTCACGGCTTGCATTGCACAAAGAAG
GGTCAACATTCCATCACGTCGCCCTATTTTGGCAACCGCTCTTGAATCAA
AAACGGTTGCAGCCCCCAAGATCGAGAAACAGGCTGAGCTCGGGAAGGAG
AGATCACCACCGTTCCGAGGGCGCACCGGAATTTTGTTAGTCAACATTGG
CACTCCAGCCTCTCTTTCTGTCCCGGACGTACGAGAATACCTCCGACAGT
TCCTTGGAGATTCGCGAGTGGTAGATCTGAACCCCATTATCAAATGGGTC
GTTCTCAACTTATTCATCTTGCGGACTAGACCAAAGGAAAGCGCGGAGGC
TTATTCTAACATCTGGGATGAGGAGAGAGGTTCACCACTGCTCTTTCACT
CCGAAGATTTGGCGGCCAGGCTTCAGAATCTTCTCGGAGAGAAATATGCT
GTTGCGGTCGGTATGCAGTATTGTCAGCCTAATGTTTATGACGTCATGGA
AGAGCTACGAGCAAGAGGCACTGATAGACTTATCGTTGTTCCGATGTATC
CGCAATATGCATCGTCGGCAACAGGCGCTGCTATCGAAATAGTCTACAAA
GCGGCGGCAAAGGTTTACTCTACTCCATACTTGCACATAGTGCCTGCGTT
CTACGACCATCCGTCTTATATTTCAGCGTACGCCGCTATTATCAAGCGAA
AGATCGGTGAACGCTGCGAGAACTACGATCACTTGCTCATGTCTTTCCAC
GGAGTTCCAGAAACTCATTGTGAACGCACCGATGAAAGCGGACTTCTTTG
TAACAAGCAAGAAAACTGCTGCGCTCAAATCGTTCAGGCGAACCGGAACT
GCTACCGCGCGCAATCGTTCGCGTCTGCCAGGCGTATCGCAGAGGCTTGT
GATATTCCCGAGGGGAAGTATTCAATTTCGTTTCAGTCACGACTTTCGGC
TGCAGGTCCTGTATGGATTCAGCCGTACACAGACGAGGAGCTTGTGAAAC
TTGCCAAAGCGGGCGTTAAGAAAATAGCTGTGGTGGTACCGAGTTTTACA
GCCGATTGTTTGGAAACGCTGGAAGAAATTGGGATTAGAGGAAAGGAAGA
CTTCATTGAAGCTGGTGGTGAGATTCTTGATCTCATTCCTTGCCTCAATT
CGGACGAGGAATGGGCGAAAGGCATGATTCAGATCCTGAAGGACTCATGT
CCGATGGATACATTTTAA
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protein sequence of Gchil2652.t2

>Gchil2652.t2 ID=Gchil2652.t2|Name=Gchil2652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=406bp
MAFVAPAPFTACIAQRRVNIPSRRPILATALESKTVAAPKIEKQAELGKE
RSPPFRGRTGILLVNIGTPASLSVPDVREYLRQFLGDSRVVDLNPIIKWV
VLNLFILRTRPKESAEAYSNIWDEERGSPLLFHSEDLAARLQNLLGEKYA
VAVGMQYCQPNVYDVMEELRARGTDRLIVVPMYPQYASSATGAAIEIVYK
AAAKVYSTPYLHIVPAFYDHPSYISAYAAIIKRKIGERCENYDHLLMSFH
GVPETHCERTDESGLLCNKQENCCAQIVQANRNCYRAQSFASARRIAEAC
DIPEGKYSISFQSRLSAAGPVWIQPYTDEELVKLAKAGVKKIAVVVPSFT
ADCLETLEEIGIRGKEDFIEAGGEILDLIPCLNSDEEWAKGMIQILKDSC
PMDTF*
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mRNA from alignment at tig00004400_pilon:2166769..2167986-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2652.t2 ID=Gchil2652.t2|Name=Gchil2652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00004400_pilon:2166769..2167986- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTTGCACCAGCTCCTTTCACGGCTTGCATTGCACAAAGAAG
GGTCAACATTCCATCACGTCGCCCTATTTTGGCAACCGCTCTTGAATCAA
AAACGGTTGCAGCCCCCAAGATCGAGAAACAGGCTGAGCTCGGGAAGGAG
AGATCACCACCGTTCCGAGGGCGCACCGGAATTTTGTTAGTCAACATTGG
CACTCCAGCCTCTCTTTCTGTCCCGGACGTACGAGAATACCTCCGACAGT
TCCTTGGAGATTCGCGAGTGGTAGATCTGAACCCCATTATCAAATGGGTC
GTTCTCAACTTATTCATCTTGCGGACTAGACCAAAGGAAAGCGCGGAGGC
TTATTCTAACATCTGGGATGAGGAGAGAGGTTCACCACTGCTCTTTCACT
CCGAAGATTTGGCGGCCAGGCTTCAGAATCTTCTCGGAGAGAAATATGCT
GTTGCGGTCGGTATGCAGTATTGTCAGCCTAATGTTTATGACGTCATGGA
AGAGCTACGAGCAAGAGGCACTGATAGACTTATCGTTGTTCCGATGTATC
CGCAATATGCATCGTCGGCAACAGGCGCTGCTATCGAAATAGTCTACAAA
GCGGCGGCAAAGGTTTACTCTACTCCATACTTGCACATAGTGCCTGCGTT
CTACGACCATCCGTCTTATATTTCAGCGTACGCCGCTATTATCAAGCGAA
AGATCGGTGAACGCTGCGAGAACTACGATCACTTGCTCATGTCTTTCCAC
GGAGTTCCAGAAACTCATTGTGAACGCACCGATGAAAGCGGACTTCTTTG
TAACAAGCAAGAAAACTGCTGCGCTCAAATCGTTCAGGCGAACCGGAACT
GCTACCGCGCGCAATCGTTCGCGTCTGCCAGGCGTATCGCAGAGGCTTGT
GATATTCCCGAGGGGAAGTATTCAATTTCGTTTCAGTCACGACTTTCGGC
TGCAGGTCCTGTATGGATTCAGCCGTACACAGACGAGGAGCTTGTGAAAC
TTGCCAAAGCGGGCGTTAAGAAAATAGCTGTGGTGGTACCGAGTTTTACA
GCCGATTGTTTGGAAACGCTGGAAGAAATTGGGATTAGAGGAAAGGAAGA
CTTCATTGAAGCTGGTGGTGAGATTCTTGATCTCATTCCTTGCCTCAATT
CGGACGAGGAATGGGCGAAAGGCATGATTCAGATCCTGAAGGACTCATGT
CCGATGGATACATTTTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2166769..2167986-

>Gchil2652.t2 ID=Gchil2652.t2|Name=Gchil2652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00004400_pilon:2166769..2167986- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTTGCACCAGCTCCTTTCACGGCTTGCATTGCACAAAGAAG
GGTCAACATTCCATCACGTCGCCCTATTTTGGCAACCGCTCTTGAATCAA
AAACGGTTGCAGCCCCCAAGATCGAGAAACAGGCTGAGCTCGGGAAGGAG
AGATCACCACCGTTCCGAGGGCGCACCGGAATTTTGTTAGTCAACATTGG
CACTCCAGCCTCTCTTTCTGTCCCGGACGTACGAGAATACCTCCGACAGT
TCCTTGGAGATTCGCGAGTGGTAGATCTGAACCCCATTATCAAATGGGTC
GTTCTCAACTTATTCATCTTGCGGACTAGACCAAAGGAAAGCGCGGAGGC
TTATTCTAACATCTGGGATGAGGAGAGAGGTTCACCACTGCTCTTTCACT
CCGAAGATTTGGCGGCCAGGCTTCAGAATCTTCTCGGAGAGAAATATGCT
GTTGCGGTCGGTATGCAGTATTGTCAGCCTAATGTTTATGACGTCATGGA
AGAGCTACGAGCAAGAGGCACTGATAGACTTATCGTTGTTCCGATGTATC
CGCAATATGCATCGTCGGCAACAGGCGCTGCTATCGAAATAGTCTACAAA
GCGGCGGCAAAGGTTTACTCTACTCCATACTTGCACATAGTGCCTGCGTT
CTACGACCATCCGTCTTATATTTCAGCGTACGCCGCTATTATCAAGCGAA
AGATCGGTGAACGCTGCGAGAACTACGATCACTTGCTCATGTCTTTCCAC
GGAGTTCCAGAAACTCATTGTGAACGCACCGATGAAAGCGGACTTCTTTG
TAACAAGCAAGAAAACTGCTGCGCTCAAATCGTTCAGGCGAACCGGAACT
GCTACCGCGCGCAATCGTTCGCGTCTGCCAGGCGTATCGCAGAGGCTTGT
GATATTCCCGAGGGGAAGTATTCAATTTCGTTTCAGTCACGACTTTCGGC
TGCAGGTCCTGTATGGATTCAGCCGTACACAGACGAGGAGCTTGTGAAAC
TTGCCAAAGCGGGCGTTAAGAAAATAGCTGTGGTGGTACCGAGTTTTACA
GCCGATTGTTTGGAAACGCTGGAAGAAATTGGGATTAGAGGAAAGGAAGA
CTTCATTGAAGCTGGTGGTGAGATTCTTGATCTCATTCCTTGCCTCAATT
CGGACGAGGAATGGGCGAAAGGCATGATTCAGATCCTGAAGGACTCATGT
CCGATGGATACATTTTAA
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