Gchil2649.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2649.t1
Unique NameGchil2649.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2146294..2146615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2649Gchil2649Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2146294..2146615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2649.t1Gchil2649.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2146294..2146615 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2649.t1.start1Gchil2649.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2146294..2146296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2649.t1.CDS1Gchil2649.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2146294..2146319 +
Gchil2649.t1.CDS2Gchil2649.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2146390..2146615 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2649.t1.exon1Gchil2649.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2146294..2146319 +
Gchil2649.t1.exon2Gchil2649.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2146390..2146615 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2649.t1.intron1Gchil2649.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2146320..2146389 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2649.t1.stop1Gchil2649.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2146613..2146615 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2649.t1 ID=Gchil2649.t1|Name=Gchil2649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=84bp
MDGLLHLSRSIQGLCNIESGGVNISHFPLWKKEVLEWNKLVADVDSGDVV
GLENICSFLTPSILRPVNVLTVLSDDQIKEMEA*
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spliced messenger RNA

>Gchil2649.t1 ID=Gchil2649.t1|Name=Gchil2649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp|location=Sequence derived from alignment at tig00004400_pilon:2146294..2146615+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGGCTTTTGCACCTCTCAAGGTCAATTCAGGGCCTTTGCAATAT
TGAGTCTGGTGGAGTGAATATATCTCATTTTCCTTTGTGGAAAAAGGAGG
TGTTGGAGTGGAATAAGTTGGTTGCTGATGTTGATTCGGGGGATGTGGTT
GGGTTGGAAAACATTTGTTCTTTTCTTACACCAAGCATTTTAAGACCAGT
GAATGTTCTTACTGTGCTCAGTGATGATCAGATCAAAGAAATGGAAGCAT
AA
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protein sequence of Gchil2649.t1

>Gchil2649.t1 ID=Gchil2649.t1|Name=Gchil2649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=84bp
MDGLLHLSRSIQGLCNIESGGVNISHFPLWKKEVLEWNKLVADVDSGDVV
GLENICSFLTPSILRPVNVLTVLSDDQIKEMEA*
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mRNA from alignment at tig00004400_pilon:2146294..2146615+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2649.t1 ID=Gchil2649.t1|Name=Gchil2649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=322bp|location=Sequence derived from alignment at tig00004400_pilon:2146294..2146615+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGGGCTTTTGCACCTCTCAAGGTAGGTGGTCTTGTATCTCGTTAT
TTTGTGTCTGGTTCTAATTTATTTTGTTTTTCTTTCACATTACTAGGTCA
ATTCAGGGCCTTTGCAATATTGAGTCTGGTGGAGTGAATATATCTCATTT
TCCTTTGTGGAAAAAGGAGGTGTTGGAGTGGAATAAGTTGGTTGCTGATG
TTGATTCGGGGGATGTGGTTGGGTTGGAAAACATTTGTTCTTTTCTTACA
CCAAGCATTTTAAGACCAGTGAATGTTCTTACTGTGCTCAGTGATGATCA
GATCAAAGAAATGGAAGCATAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2146294..2146615+

>Gchil2649.t1 ID=Gchil2649.t1|Name=Gchil2649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=252bp|location=Sequence derived from alignment at tig00004400_pilon:2146294..2146615+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGGGCTTTTGCACCTCTCAAGGTCAATTCAGGGCCTTTGCAATAT
TGAGTCTGGTGGAGTGAATATATCTCATTTTCCTTTGTGGAAAAAGGAGG
TGTTGGAGTGGAATAAGTTGGTTGCTGATGTTGATTCGGGGGATGTGGTT
GGGTTGGAAAACATTTGTTCTTTTCTTACACCAAGCATTTTAAGACCAGT
GAATGTTCTTACTGTGCTCAGTGATGATCAGATCAAAGAAATGGAAGCAT
AA
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