Gchil2648.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2648.t1
Unique NameGchil2648.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2145234..2146089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2648Gchil2648Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2145234..2146089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2648.t1Gchil2648.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2145234..2146089 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2648.t1.start1Gchil2648.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2145234..2145236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2648.t1.CDS1Gchil2648.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2145234..2145491 +
Gchil2648.t1.CDS2Gchil2648.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2145579..2145596 +
Gchil2648.t1.CDS3Gchil2648.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2145665..2145670 +
Gchil2648.t1.CDS4Gchil2648.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2145917..2145949 +
Gchil2648.t1.CDS5Gchil2648.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2146006..2146089 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2648.t1.exon1Gchil2648.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2145234..2145491 +
Gchil2648.t1.exon2Gchil2648.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2145579..2145596 +
Gchil2648.t1.exon3Gchil2648.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2145665..2145670 +
Gchil2648.t1.exon4Gchil2648.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2145917..2145949 +
Gchil2648.t1.exon5Gchil2648.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2146006..2146089 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2648.t1.intron1Gchil2648.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2145492..2145578 +
Gchil2648.t1.intron2Gchil2648.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2145597..2145664 +
Gchil2648.t1.intron3Gchil2648.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2145671..2145916 +
Gchil2648.t1.intron4Gchil2648.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2145950..2146005 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2648.t1.stop1Gchil2648.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2146087..2146089 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2648.t1 ID=Gchil2648.t1|Name=Gchil2648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=133bp
MQLQKSSAQSQLNFKLLIERMNKSNETVYDSRAQICDHLNSVHFEIKKGT
DQVLKELKSGRGYIVKAVARPEPSENLDDPNQLMLEKAELLHEYSRAYES
IRKMIVVSFFNAMISSCPFYTRSKCSETLKKE*
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spliced messenger RNA

>Gchil2648.t1 ID=Gchil2648.t1|Name=Gchil2648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00004400_pilon:2145234..2146089+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACTTCAGAAGTCCTCCGCCCAGTCACAGCTGAACTTCAAGCTATT
GATAGAAAGAATGAACAAATCAAACGAGACAGTTTATGACTCTCGTGCGC
AGATTTGCGATCATCTCAACAGTGTTCATTTCGAAATAAAGAAAGGGACA
GATCAAGTGTTGAAGGAACTAAAGTCCGGAAGGGGATATATCGTGAAGGC
AGTGGCAAGGCCAGAACCATCAGAGAACCTGGATGATCCGAATCAGCTCA
TGCTAGAGaaagcagaactgctgcacgaatacagtcgtgcatacgaaagc
attcgaaagatgattGTTGTCTCATTTTTCAATGCAATGATATCGTCATG
TCCATTTTACACGCGATCAAAGTGCTCGGAAACCTTAAAGAAAGAGTAG
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protein sequence of Gchil2648.t1

>Gchil2648.t1 ID=Gchil2648.t1|Name=Gchil2648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=133bp
MQLQKSSAQSQLNFKLLIERMNKSNETVYDSRAQICDHLNSVHFEIKKGT
DQVLKELKSGRGYIVKAVARPEPSENLDDPNQLMLEKAELLHEYSRAYES
IRKMIVVSFFNAMISSCPFYTRSKCSETLKKE*
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mRNA from alignment at tig00004400_pilon:2145234..2146089+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2648.t1 ID=Gchil2648.t1|Name=Gchil2648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=856bp|location=Sequence derived from alignment at tig00004400_pilon:2145234..2146089+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACTTCAGAAGTCCTCCGCCCAGTCACAGCTGAACTTCAAGCTATT
GATAGAAAGAATGAACAAATCAAACGAGACAGTTTATGACTCTCGTGCGC
AGATTTGCGATCATCTCAACAGTGTTCATTTCGAAATAAAGAAAGGGACA
GATCAAGTGTTGAAGGAACTAAAGTCCGGAAGGGGATATATCGTGAAGGC
AGTGGCAAGGCCAGAACCATCAGAGAACCTGGATGATCCGAATCAGCTCA
TGCTAGAGGTAGGTTTTGGTTCTTCGTTTCCCTCGAAGACAACATATCTT
GACATATTTATTAactttacattccatttttcattgttgctacagaaagc
agaactgctgcacgtaagtttctttcttgatcatatgagagttatttata
tatcggtttctaacaaattttctctctctaggaatacgttcgctacttgt
gctgcgtggagtttctgaatccagatcgaggacaagaactcttcactatt
tcgacagacaccgaaaacaggcctttgggagagagtttgtttcaatcttc
ttggctttggagaggagcataaataatttttggtgaacaagagcccacca
aatttcaaaattcgcagataactattcccaaacgtaacggagaaactctt
atcaaggggaacacgtatgcatctcgctcacagagtcgtgcatacgaaag
cattcgaaagatgattgtaagtGATATGGCATGAATCAGTCGCAATAAGT
ATTTCTCTAACGTTTGCACCAGGTTGTCTCATTTTTCAATGCAATGATAT
CGTCATGTCCATTTTACACGCGATCAAAGTGCTCGGAAACCTTAAAGAAA
GAGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:2145234..2146089+

>Gchil2648.t1 ID=Gchil2648.t1|Name=Gchil2648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00004400_pilon:2145234..2146089+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACTTCAGAAGTCCTCCGCCCAGTCACAGCTGAACTTCAAGCTATT
GATAGAAAGAATGAACAAATCAAACGAGACAGTTTATGACTCTCGTGCGC
AGATTTGCGATCATCTCAACAGTGTTCATTTCGAAATAAAGAAAGGGACA
GATCAAGTGTTGAAGGAACTAAAGTCCGGAAGGGGATATATCGTGAAGGC
AGTGGCAAGGCCAGAACCATCAGAGAACCTGGATGATCCGAATCAGCTCA
TGCTAGAGaaagcagaactgctgcacgaatacagtcgtgcatacgaaagc
attcgaaagatgattGTTGTCTCATTTTTCAATGCAATGATATCGTCATG
TCCATTTTACACGCGATCAAAGTGCTCGGAAACCTTAAAGAAAGAGTAG
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