Gchil2647.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2647.t2
Unique NameGchil2647.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2124583..2125196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005851106.1
PFAMsSAYSvFN
Max annot lvl3041|Chlorophyta
Evalue5.31e-12
EggNOG OGsKOG3249@1|root,KOG3249@2759|Eukaryota,37HNY@33090|Viridiplantae,34IVM@3041|Chlorophyta
DescriptionUncharacterized conserved domain (SAYSvFN)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2647Gchil2647Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2124583..2125196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2647.t2Gchil2647.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2124583..2125196 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2647.t2.stop1Gchil2647.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2124583..2124585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2647.t2.CDS1Gchil2647.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2124583..2124754 -
Gchil2647.t2.CDS2Gchil2647.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2124871..2125196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2647.t2.exon1Gchil2647.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2124583..2124754 -
Gchil2647.t2.exon2Gchil2647.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2124871..2125196 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2647.t2.intron1Gchil2647.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2124755..2124870 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2647.t2.start1Gchil2647.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2125194..2125196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2647.t2 ID=Gchil2647.t2|Name=Gchil2647.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=166bp
MAQSSTLEHHPAEDEHGARLPKLLKFMQTHWIRILALIVWLGGAYIAVTF
DIGALQLYIIATVFYIILTNLGERRIGPSAYSVFNRNCEPIMGQLTAQQF
DNEVRRRAVDFHPAQSHYRVNSVTTSTADAHDELLRALRSQIQEQHRPSR
RRQAFQTSSLRGSRR*
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spliced messenger RNA

>Gchil2647.t2 ID=Gchil2647.t2|Name=Gchil2647.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004400_pilon:2124583..2125196- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAGTCATCAACTCTAGAACATCATCCTGCCGAGGATGAACACGG
TGCACGCCTTCCCAAGCTGTTGAAATTTATGCAAACGCACTGGATTCGTA
TTCTGGCATTAATTGTATGGCTTGGTGGTGCCTATATTGCCGTAACGTTC
GACATAGGAGCATTGCAATTGTACATCATAGCGACTGTCTTCTACATCAT
CTTAACTAACCTAGGGGAACGGCGGATTGGACCTTCGGCATATTCCGTGT
TCAACCGAAACTGTGAACCCATCATGGGCCAACTCACTGCTCAACAGTTT
GATAATGAAGTGCGTCGCCGCGCTGTCGACTTCCACCCTGCACAATCTCA
TTACCGTGTGAACAGTGTGACAACGTCGACGGCAGATGCACATGATGAGC
TCCTCCGTGCTCTCCGTTCCCAAATACAAGAACAACATCGCCCATCTCGA
AGACGCCAAGCATTTCAAACATCTTCGCTTCGAGGCAGCAGGCGTTGA
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protein sequence of Gchil2647.t2

>Gchil2647.t2 ID=Gchil2647.t2|Name=Gchil2647.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MAQSSTLEHHPAEDEHGARLPKLLKFMQTHWIRILALIVWLGGAYIAVTF
DIGALQLYIIATVFYIILTNLGERRIGPSAYSVFNRNCEPIMGQLTAQQF
DNEVRRRAVDFHPAQSHYRVNSVTTSTADAHDELLRALRSQIQEQHRPSR
RRQAFQTSSLRGSRR*
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mRNA from alignment at tig00004400_pilon:2124583..2125196-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2647.t2 ID=Gchil2647.t2|Name=Gchil2647.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=614bp|location=Sequence derived from alignment at tig00004400_pilon:2124583..2125196- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACAGTCATCAACTCTAGAACATCATCCTGCCGAGGATGAACACGG
TGCACGCCTTCCCAAGCTGTTGAAATTTATGCAAACGCACTGGATTCGTA
TTCTGGCATTAATTGTATGGCTTGGTGGTGCCTATATTGCCGTAACGTTC
GACATAGGAGCATTGCAATTGTACATCATAGCGACTGTCTTCTACATCAT
CTTAACTAACCTAGGGGAACGGCGGATTGGACCTTCGGCATATTCCGTGT
TCAACCGAAACTGTGAACCCATCATGGGCCAACTCACTGCTCAACAGTTT
GATAATGAAGTGCGTCGCCGCGCTGTGTACGTATATCCAGGTCAAATCAT
TATGAACCGCCATTGGTACATTTATCTCTCTATATCTAGCTGTTGAACTA
ACCTTTTGCTCAGAAATGATGATGACATTTTGTCCAATATAGCGACTTCC
ACCCTGCACAATCTCATTACCGTGTGAACAGTGTGACAACGTCGACGGCA
GATGCACATGATGAGCTCCTCCGTGCTCTCCGTTCCCAAATACAAGAACA
ACATCGCCCATCTCGAAGACGCCAAGCATTTCAAACATCTTCGCTTCGAG
GCAGCAGGCGTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2124583..2125196-

>Gchil2647.t2 ID=Gchil2647.t2|Name=Gchil2647.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00004400_pilon:2124583..2125196- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACAGTCATCAACTCTAGAACATCATCCTGCCGAGGATGAACACGG
TGCACGCCTTCCCAAGCTGTTGAAATTTATGCAAACGCACTGGATTCGTA
TTCTGGCATTAATTGTATGGCTTGGTGGTGCCTATATTGCCGTAACGTTC
GACATAGGAGCATTGCAATTGTACATCATAGCGACTGTCTTCTACATCAT
CTTAACTAACCTAGGGGAACGGCGGATTGGACCTTCGGCATATTCCGTGT
TCAACCGAAACTGTGAACCCATCATGGGCCAACTCACTGCTCAACAGTTT
GATAATGAAGTGCGTCGCCGCGCTGTCGACTTCCACCCTGCACAATCTCA
TTACCGTGTGAACAGTGTGACAACGTCGACGGCAGATGCACATGATGAGC
TCCTCCGTGCTCTCCGTTCCCAAATACAAGAACAACATCGCCCATCTCGA
AGACGCCAAGCATTTCAAACATCTTCGCTTCGAGGCAGCAGGCGTTGA
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