Gchil2645.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2645.t1
Unique Name	Gchil2645.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:2122318..2123439 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926569.ANT_23310
Preferred name	rsmH
PFAMs	Methyltransf_5
Max annot lvl	200795\|Chloroflexi
KEGG ko	ko:K03438
GOs	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Evalue	3.97e-67
EggNOG OGs	COG0275@1\|root,COG0275@2\|Bacteria,2G658@200795\|Chloroflexi
EC	2.1.1.199
Description	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
COG category	J
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2645	Gchil2645	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 2122318..2123439 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2645.t1.stop1	Gchil2645.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 2122318..2122320 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2645.t1.CDS1	Gchil2645.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 2122318..2123439 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2645.t1.exon1	Gchil2645.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 2122318..2123439 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2645.t1.start1	Gchil2645.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 2123437..2123439 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2645.t1	Gchil2645.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 2122318..2123439 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:2122318..2123439-
coding sequence from alignment at tig00004400_pilon:2122318..2123439-

mRNA sequence

>Gchil2645.t1 ID=Gchil2645.t1|Name=Gchil2645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp
MTEELVTAMSHTSIASAVGFAHAFFPRSALTHFQPFQRKKSLVWFTTTAL
GLPILSTQKSTSLPHTPVLVSEVCSSFPSHIPSFLDCTVGAGGHAKHLLL
HKHIDEYIALDKDPHALEIAKNTLVDFDNVRLIRSDFRCFSTVLQKLGIG
AVHSILLDIGTSSMQLDQGERGFSFTNDGPIDMRMSCTGLSAQDLLHGAT
EEELATMFWELGEERMSRQIARAIVTEREADVIRTTKQLARIVERVKGWK
KKGMHPATQVFQAFRIATNDELSALEEALTEAVDKLTPRGRVAVISFHSL
EDRIAKRVFKSASKRRGGVKLITKKPVVASADECERNPRARSAKLRVVER
LGTNEMPASKINKYRSHSGAVLA*

spliced messenger RNA

>Gchil2645.t1 ID=Gchil2645.t1|Name=Gchil2645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004400_pilon:2122318..2123439- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAGGAGCTAGTGACCGCTATGAGTCATACTTCGATCGCCTCTGC
AGTAGGCTTTGCTCACGCATTCTTCCCGCGAAGCGCCTTGACGCATTTTC
AACCCTTTCAACGGAAAAAGAGCCTGGTTTGGTTCACAACTACCGCTCTT
GGACTTCCGATTCTATCAACTCAAAAATCGACCTCACTCCCTCATACTCC
GGTACTGGTCTCTGAGGTTTGTTCCTCATTTCCTTCTCATATCCCTTCCT
TTTTGGATTGCACGGTCGGGGCGGGCGGCCATGCCAAACATCTTTTACTT
CACAAACATATCGATGAATACATCGCGCTGGACAAAGACCCGCATGCTCT
GGAGATCGCTAAAAACACGCTAGTCGACTTCGATAATGTACGTCTCATTC
GCTCGGACTTCCGCTGCTTCAGTACGGTGCTCCAAAAACTGGGCATTGGA
GCGGTGCACTCGATTTTACTAGATATCGGAACATCATCTATGCAACTAGA
TCAAGGTGAACGTGGATTTAGTTTCACAAACGATGGCCCTATTGATATGC
GCATGTCTTGCACAGGTTTGTCGGCTCAAGATTTGCTTCACGGTGCAACA
GAGGAAGAGCTGGCAACCATGTTTTGGGAGCTGGGCGAAGAACGTATGTC
CCGTCAAATTGCAAGAGCAATTGTGACGGAGCGGGAGGCCGACGTCATAC
GCACAACTAAACAATTAGCCAGGATAGTGGAGCGAGTAAAGGGGTGGAAA
AAGAAGGGAATGCATCCAGCCACTCAAGTATTTCAAGCGTTCCGCATCGC
CACCAATGATGAGCTATCAGCTCTGGAGGAAGCGCTAACAGAGGCAGTTG
ATAAACTAACGCCGCGTGGAAGGGTTGCGGTGATCAGTTTCCATTCTCTG
GAAGATAGAATAGCCAAACGAGTTTTTAAGAGCGCGTCGAAACGGCGAGG
TGGGGTCAAGCTAATTACGAAGAAACCTGTGGTTGCGAGTGCAGACGAAT
GTGAACGGAATCCCAGAGCTAGAAGCGCTAAACTCCGAGTTGTAGAGAGA
TTGGGGACCAATGAAATGCCTGCGAGCAAGATTAACAAGTATCGTAGTCA
TTCAGGGGCTGTTCTGGCTTGA

protein sequence of Gchil2645.t1

>Gchil2645.t1 ID=Gchil2645.t1|Name=Gchil2645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=374bp
MTEELVTAMSHTSIASAVGFAHAFFPRSALTHFQPFQRKKSLVWFTTTAL
GLPILSTQKSTSLPHTPVLVSEVCSSFPSHIPSFLDCTVGAGGHAKHLLL
HKHIDEYIALDKDPHALEIAKNTLVDFDNVRLIRSDFRCFSTVLQKLGIG
AVHSILLDIGTSSMQLDQGERGFSFTNDGPIDMRMSCTGLSAQDLLHGAT
EEELATMFWELGEERMSRQIARAIVTEREADVIRTTKQLARIVERVKGWK
KKGMHPATQVFQAFRIATNDELSALEEALTEAVDKLTPRGRVAVISFHSL
EDRIAKRVFKSASKRRGGVKLITKKPVVASADECERNPRARSAKLRVVER
LGTNEMPASKINKYRSHSGAVLA*

mRNA from alignment at tig00004400_pilon:2122318..2123439-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2645.t1 ID=Gchil2645.t1|Name=Gchil2645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004400_pilon:2122318..2123439- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAGGAGCTAGTGACCGCTATGAGTCATACTTCGATCGCCTCTGC
AGTAGGCTTTGCTCACGCATTCTTCCCGCGAAGCGCCTTGACGCATTTTC
AACCCTTTCAACGGAAAAAGAGCCTGGTTTGGTTCACAACTACCGCTCTT
GGACTTCCGATTCTATCAACTCAAAAATCGACCTCACTCCCTCATACTCC
GGTACTGGTCTCTGAGGTTTGTTCCTCATTTCCTTCTCATATCCCTTCCT
TTTTGGATTGCACGGTCGGGGCGGGCGGCCATGCCAAACATCTTTTACTT
CACAAACATATCGATGAATACATCGCGCTGGACAAAGACCCGCATGCTCT
GGAGATCGCTAAAAACACGCTAGTCGACTTCGATAATGTACGTCTCATTC
GCTCGGACTTCCGCTGCTTCAGTACGGTGCTCCAAAAACTGGGCATTGGA
GCGGTGCACTCGATTTTACTAGATATCGGAACATCATCTATGCAACTAGA
TCAAGGTGAACGTGGATTTAGTTTCACAAACGATGGCCCTATTGATATGC
GCATGTCTTGCACAGGTTTGTCGGCTCAAGATTTGCTTCACGGTGCAACA
GAGGAAGAGCTGGCAACCATGTTTTGGGAGCTGGGCGAAGAACGTATGTC
CCGTCAAATTGCAAGAGCAATTGTGACGGAGCGGGAGGCCGACGTCATAC
GCACAACTAAACAATTAGCCAGGATAGTGGAGCGAGTAAAGGGGTGGAAA
AAGAAGGGAATGCATCCAGCCACTCAAGTATTTCAAGCGTTCCGCATCGC
CACCAATGATGAGCTATCAGCTCTGGAGGAAGCGCTAACAGAGGCAGTTG
ATAAACTAACGCCGCGTGGAAGGGTTGCGGTGATCAGTTTCCATTCTCTG
GAAGATAGAATAGCCAAACGAGTTTTTAAGAGCGCGTCGAAACGGCGAGG
TGGGGTCAAGCTAATTACGAAGAAACCTGTGGTTGCGAGTGCAGACGAAT
GTGAACGGAATCCCAGAGCTAGAAGCGCTAAACTCCGAGTTGTAGAGAGA
TTGGGGACCAATGAAATGCCTGCGAGCAAGATTAACAAGTATCGTAGTCA
TTCAGGGGCTGTTCTGGCTTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:2122318..2123439-

>Gchil2645.t1 ID=Gchil2645.t1|Name=Gchil2645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00004400_pilon:2122318..2123439- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAGGAGCTAGTGACCGCTATGAGTCATACTTCGATCGCCTCTGC
AGTAGGCTTTGCTCACGCATTCTTCCCGCGAAGCGCCTTGACGCATTTTC
AACCCTTTCAACGGAAAAAGAGCCTGGTTTGGTTCACAACTACCGCTCTT
GGACTTCCGATTCTATCAACTCAAAAATCGACCTCACTCCCTCATACTCC
GGTACTGGTCTCTGAGGTTTGTTCCTCATTTCCTTCTCATATCCCTTCCT
TTTTGGATTGCACGGTCGGGGCGGGCGGCCATGCCAAACATCTTTTACTT
CACAAACATATCGATGAATACATCGCGCTGGACAAAGACCCGCATGCTCT
GGAGATCGCTAAAAACACGCTAGTCGACTTCGATAATGTACGTCTCATTC
GCTCGGACTTCCGCTGCTTCAGTACGGTGCTCCAAAAACTGGGCATTGGA
GCGGTGCACTCGATTTTACTAGATATCGGAACATCATCTATGCAACTAGA
TCAAGGTGAACGTGGATTTAGTTTCACAAACGATGGCCCTATTGATATGC
GCATGTCTTGCACAGGTTTGTCGGCTCAAGATTTGCTTCACGGTGCAACA
GAGGAAGAGCTGGCAACCATGTTTTGGGAGCTGGGCGAAGAACGTATGTC
CCGTCAAATTGCAAGAGCAATTGTGACGGAGCGGGAGGCCGACGTCATAC
GCACAACTAAACAATTAGCCAGGATAGTGGAGCGAGTAAAGGGGTGGAAA
AAGAAGGGAATGCATCCAGCCACTCAAGTATTTCAAGCGTTCCGCATCGC
CACCAATGATGAGCTATCAGCTCTGGAGGAAGCGCTAACAGAGGCAGTTG
ATAAACTAACGCCGCGTGGAAGGGTTGCGGTGATCAGTTTCCATTCTCTG
GAAGATAGAATAGCCAAACGAGTTTTTAAGAGCGCGTCGAAACGGCGAGG
TGGGGTCAAGCTAATTACGAAGAAACCTGTGGTTGCGAGTGCAGACGAAT
GTGAACGGAATCCCAGAGCTAGAAGCGCTAAACTCCGAGTTGTAGAGAGA
TTGGGGACCAATGAAATGCCTGCGAGCAAGATTAACAAGTATCGTAGTCA
TTCAGGGGCTGTTCTGGCTTGA