Gchil2627.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2627.t1
Unique Name	Gchil2627.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	600

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:2018634..2020433 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65393.PCC7424_1553
Preferred name	uvrC
PFAMs	GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03703
KEGG Pathway	ko03420,map03420
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391
Evalue	6.39e-121
EggNOG OGs	COG0322@1\|root,COG0322@2\|Bacteria,1G0NS@1117\|Cyanobacteria,3KH84@43988\|Cyanothece
Description	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
COG category	L
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2627	Gchil2627	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 2018634..2020433 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2627.t1.stop1	Gchil2627.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 2018634..2018636 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2627.t1.CDS1	Gchil2627.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 2018634..2020433 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2627.t1.exon1	Gchil2627.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 2018634..2020433 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2627.t1.start1	Gchil2627.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 2020431..2020433 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2627.t1	Gchil2627.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 2018634..2020433 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:2018634..2020433-
coding sequence from alignment at tig00004400_pilon:2018634..2020433-

mRNA sequence

>Gchil2627.t1 ID=Gchil2627.t1|Name=Gchil2627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp
MLHAAVAVDFVVTDSEAAALALEAAMVHETQPFYNVLLKDDRRHPYVLIT
DSHDYPRILITRSRKRASEHDTLYGPFVNENVLRRLLAVVHSTFPLRQRQ
KPLFSDRPCINYDLGRCPGVCQQLISAQDYSNTIDSVHKLFSGRVADVVN
QLRADMAYHSSLMQYEKAAEIRDRIATLESAFADTTGLQHAFEDVQSAST
IVSPSSTTSRDVFAISSMDTVCKVVLFQVRAGKLVSTLAFCVHPTAEHAE
LLNAVLSAHYARVTHPMQIPEEVVLCTPTSDKRMLQAALSEKRGKRVVVK
GSKGVSLAAMVQKNADMEVQLEQERIHGAARDLNALEHLMKPYVESMNSW
RTEDATDEHDKRKRNNYALRRIECYDISHTSGANAVGSMAVFVNGSPCLS
EYRRYNLSRQSSYQGHPDDYACIQETLAKRFARTAGGGGGSADEAPLPQL
IIIDGGKGQLSSAAEALQKVGLHGRVPLMSIAKGEEAVFVDGQKQAINYD
AASGGHVMSAGVGLICRLRDEAHRTALRAHRDRRGKQALRCGLDSVSGLG
ARKRAALLAHFNGSVEAVANAVPDELVRVHGVGRALAQKIYCHFHDGSS*

spliced messenger RNA

>Gchil2627.t1 ID=Gchil2627.t1|Name=Gchil2627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004400_pilon:2018634..2020433- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCACGCCGCTGTCGCCGTTGACTTTGTCGTCACCGATTCGGAGGC
TGCGGCGCTTGCATTGGAGGCCGCGATGGTGCACGAGACACAGCCATTCT
ACAACGTGTTGCTCAAGGATGACCGTCGCCACCCGTATGTGCTCATCACC
GACTCGCATGACTATCCGCGCATCCTCATCACCAGAAGTCGAAAGCGCGC
TAGTGAACATGACACCTTGTACGGGCCCTTTGTCAATGAAAACGTCCTGC
GCCGGTTGCTAGCGGTTGTGCACTCTACATTCCCGCTCCGCCAGCGTCAG
AAACCACTCTTCTCGGACCGCCCGTGCATCAACTACGACCTGGGCAGATG
CCCTGGCGTGTGTCAACAACTGATAAGCGCACAAGATTACAGCAACACTA
TAGATAGCGTCCACAAGTTGTTTTCTGGCCGAGTGGCGGACGTTGTGAAT
CAACTGCGCGCAGACATGGCATATCATTCGTCACTGATGCAGTATGAAAA
AGCGGCCGAGATTCGAGACCGAATCGCCACTCTTGAGAGCGCGTTTGCTG
ACACGACCGGTTTGCAGCACGCCTTCGAAGACGTGCAATCGGCCTCTACC
ATTGTGTCACCCTCGTCCACCACCTCCCGTGATGTTTTTGCCATCTCGTC
GATGGACACTGTTTGCAAGGTCGTGCTCTTTCAGGTCAGAGCTGGCAAGC
TGGTTTCGACGCTTGCCTTTTGCGTGCACCCCACTGCTGAGCACGCGGAG
TTGCTCAACGCAGTGTTGAGCGCTCACTACGCGCGAGTGACGCACCCGAT
GCAAATTCCGGAAGAGGTTGTGCTATGTACGCCGACCTCGGACAAGCGCA
TGCTGCAGGCTGCGCTCAGCGAGAAGAGGGGAAAAAGGGTCGTTGTCAAG
GGCAGCAAGGGCGTGTCTTTGGCCGCCATGGTCCAAAAGAACGCCGACAT
GGAGGTGCAGCTCGAGCAAGAGCGAATCCACGGCGCGGCAAGAGATTTGA
ACGCTCTTGAGCACTTGATGAAACCATACGTAGAGAGCATGAATTCGTGG
CGCACAGAGGACGCCACAGACGAACATGACAAGCGCAAGCGCAACAATTA
CGCTCTGCGGAGGATAGAATGCTATGACATATCTCACACCAGTGGAGCGA
ACGCCGTAGGGTCCATGGCTGTGTTTGTGAATGGGTCGCCGTGTCTATCG
GAGTATCGACGATACAATCTTAGTCGACAGAGCTCGTACCAAGGTCATCC
AGACGACTACGCATGCATTCAGGAGACGCTTGCCAAACGATTCGCACGCA
CAGCAGGTGGGGGCGGGGGCTCTGCAGATGAGGCGCCCCTACCGCAGCTC
ATCATCATCGACGGCGGCAAAGGGCAGCTGAGCAGTGCGGCGGAAGCACT
GCAGAAGGTGGGTTTGCACGGAAGGGTACCGCTGATGAGCATTGCCAAGG
GAGAAGAGGCGGTGTTTGTGGACGGACAGAAGCAGGCGATCAACTACGAC
GCTGCCTCCGGGGGGCACGTGATGAGCGCTGGCGTTGGTCTGATTTGTCG
GCTGCGAGACGAGGCTCACCGAACAGCGCTGAGGGCGCACCGGGACAGGC
GCGGAAAACAAGCGCTGAGGTGCGGGCTTGACTCGGTGTCGGGCCTCGGG
GCGCGGAAGCGGGCGGCGCTGTTGGCGCATTTCAACGGCAGTGTTGAGGC
GGTGGCCAATGCTGTACCGGACGAGCTGGTTCGAGTGCACGGCGTGGGGC
GCGCTCTCGCGCAGAAAATCTACTGTCACTTTCACGACGGCTCAAGTTGA

protein sequence of Gchil2627.t1

>Gchil2627.t1 ID=Gchil2627.t1|Name=Gchil2627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=600bp
MLHAAVAVDFVVTDSEAAALALEAAMVHETQPFYNVLLKDDRRHPYVLIT
DSHDYPRILITRSRKRASEHDTLYGPFVNENVLRRLLAVVHSTFPLRQRQ
KPLFSDRPCINYDLGRCPGVCQQLISAQDYSNTIDSVHKLFSGRVADVVN
QLRADMAYHSSLMQYEKAAEIRDRIATLESAFADTTGLQHAFEDVQSAST
IVSPSSTTSRDVFAISSMDTVCKVVLFQVRAGKLVSTLAFCVHPTAEHAE
LLNAVLSAHYARVTHPMQIPEEVVLCTPTSDKRMLQAALSEKRGKRVVVK
GSKGVSLAAMVQKNADMEVQLEQERIHGAARDLNALEHLMKPYVESMNSW
RTEDATDEHDKRKRNNYALRRIECYDISHTSGANAVGSMAVFVNGSPCLS
EYRRYNLSRQSSYQGHPDDYACIQETLAKRFARTAGGGGGSADEAPLPQL
IIIDGGKGQLSSAAEALQKVGLHGRVPLMSIAKGEEAVFVDGQKQAINYD
AASGGHVMSAGVGLICRLRDEAHRTALRAHRDRRGKQALRCGLDSVSGLG
ARKRAALLAHFNGSVEAVANAVPDELVRVHGVGRALAQKIYCHFHDGSS*

mRNA from alignment at tig00004400_pilon:2018634..2020433-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2627.t1 ID=Gchil2627.t1|Name=Gchil2627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004400_pilon:2018634..2020433- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCACGCCGCTGTCGCCGTTGACTTTGTCGTCACCGATTCGGAGGC
TGCGGCGCTTGCATTGGAGGCCGCGATGGTGCACGAGACACAGCCATTCT
ACAACGTGTTGCTCAAGGATGACCGTCGCCACCCGTATGTGCTCATCACC
GACTCGCATGACTATCCGCGCATCCTCATCACCAGAAGTCGAAAGCGCGC
TAGTGAACATGACACCTTGTACGGGCCCTTTGTCAATGAAAACGTCCTGC
GCCGGTTGCTAGCGGTTGTGCACTCTACATTCCCGCTCCGCCAGCGTCAG
AAACCACTCTTCTCGGACCGCCCGTGCATCAACTACGACCTGGGCAGATG
CCCTGGCGTGTGTCAACAACTGATAAGCGCACAAGATTACAGCAACACTA
TAGATAGCGTCCACAAGTTGTTTTCTGGCCGAGTGGCGGACGTTGTGAAT
CAACTGCGCGCAGACATGGCATATCATTCGTCACTGATGCAGTATGAAAA
AGCGGCCGAGATTCGAGACCGAATCGCCACTCTTGAGAGCGCGTTTGCTG
ACACGACCGGTTTGCAGCACGCCTTCGAAGACGTGCAATCGGCCTCTACC
ATTGTGTCACCCTCGTCCACCACCTCCCGTGATGTTTTTGCCATCTCGTC
GATGGACACTGTTTGCAAGGTCGTGCTCTTTCAGGTCAGAGCTGGCAAGC
TGGTTTCGACGCTTGCCTTTTGCGTGCACCCCACTGCTGAGCACGCGGAG
TTGCTCAACGCAGTGTTGAGCGCTCACTACGCGCGAGTGACGCACCCGAT
GCAAATTCCGGAAGAGGTTGTGCTATGTACGCCGACCTCGGACAAGCGCA
TGCTGCAGGCTGCGCTCAGCGAGAAGAGGGGAAAAAGGGTCGTTGTCAAG
GGCAGCAAGGGCGTGTCTTTGGCCGCCATGGTCCAAAAGAACGCCGACAT
GGAGGTGCAGCTCGAGCAAGAGCGAATCCACGGCGCGGCAAGAGATTTGA
ACGCTCTTGAGCACTTGATGAAACCATACGTAGAGAGCATGAATTCGTGG
CGCACAGAGGACGCCACAGACGAACATGACAAGCGCAAGCGCAACAATTA
CGCTCTGCGGAGGATAGAATGCTATGACATATCTCACACCAGTGGAGCGA
ACGCCGTAGGGTCCATGGCTGTGTTTGTGAATGGGTCGCCGTGTCTATCG
GAGTATCGACGATACAATCTTAGTCGACAGAGCTCGTACCAAGGTCATCC
AGACGACTACGCATGCATTCAGGAGACGCTTGCCAAACGATTCGCACGCA
CAGCAGGTGGGGGCGGGGGCTCTGCAGATGAGGCGCCCCTACCGCAGCTC
ATCATCATCGACGGCGGCAAAGGGCAGCTGAGCAGTGCGGCGGAAGCACT
GCAGAAGGTGGGTTTGCACGGAAGGGTACCGCTGATGAGCATTGCCAAGG
GAGAAGAGGCGGTGTTTGTGGACGGACAGAAGCAGGCGATCAACTACGAC
GCTGCCTCCGGGGGGCACGTGATGAGCGCTGGCGTTGGTCTGATTTGTCG
GCTGCGAGACGAGGCTCACCGAACAGCGCTGAGGGCGCACCGGGACAGGC
GCGGAAAACAAGCGCTGAGGTGCGGGCTTGACTCGGTGTCGGGCCTCGGG
GCGCGGAAGCGGGCGGCGCTGTTGGCGCATTTCAACGGCAGTGTTGAGGC
GGTGGCCAATGCTGTACCGGACGAGCTGGTTCGAGTGCACGGCGTGGGGC
GCGCTCTCGCGCAGAAAATCTACTGTCACTTTCACGACGGCTCAAGTTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:2018634..2020433-

>Gchil2627.t1 ID=Gchil2627.t1|Name=Gchil2627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1800bp|location=Sequence derived from alignment at tig00004400_pilon:2018634..2020433- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCACGCCGCTGTCGCCGTTGACTTTGTCGTCACCGATTCGGAGGC
TGCGGCGCTTGCATTGGAGGCCGCGATGGTGCACGAGACACAGCCATTCT
ACAACGTGTTGCTCAAGGATGACCGTCGCCACCCGTATGTGCTCATCACC
GACTCGCATGACTATCCGCGCATCCTCATCACCAGAAGTCGAAAGCGCGC
TAGTGAACATGACACCTTGTACGGGCCCTTTGTCAATGAAAACGTCCTGC
GCCGGTTGCTAGCGGTTGTGCACTCTACATTCCCGCTCCGCCAGCGTCAG
AAACCACTCTTCTCGGACCGCCCGTGCATCAACTACGACCTGGGCAGATG
CCCTGGCGTGTGTCAACAACTGATAAGCGCACAAGATTACAGCAACACTA
TAGATAGCGTCCACAAGTTGTTTTCTGGCCGAGTGGCGGACGTTGTGAAT
CAACTGCGCGCAGACATGGCATATCATTCGTCACTGATGCAGTATGAAAA
AGCGGCCGAGATTCGAGACCGAATCGCCACTCTTGAGAGCGCGTTTGCTG
ACACGACCGGTTTGCAGCACGCCTTCGAAGACGTGCAATCGGCCTCTACC
ATTGTGTCACCCTCGTCCACCACCTCCCGTGATGTTTTTGCCATCTCGTC
GATGGACACTGTTTGCAAGGTCGTGCTCTTTCAGGTCAGAGCTGGCAAGC
TGGTTTCGACGCTTGCCTTTTGCGTGCACCCCACTGCTGAGCACGCGGAG
TTGCTCAACGCAGTGTTGAGCGCTCACTACGCGCGAGTGACGCACCCGAT
GCAAATTCCGGAAGAGGTTGTGCTATGTACGCCGACCTCGGACAAGCGCA
TGCTGCAGGCTGCGCTCAGCGAGAAGAGGGGAAAAAGGGTCGTTGTCAAG
GGCAGCAAGGGCGTGTCTTTGGCCGCCATGGTCCAAAAGAACGCCGACAT
GGAGGTGCAGCTCGAGCAAGAGCGAATCCACGGCGCGGCAAGAGATTTGA
ACGCTCTTGAGCACTTGATGAAACCATACGTAGAGAGCATGAATTCGTGG
CGCACAGAGGACGCCACAGACGAACATGACAAGCGCAAGCGCAACAATTA
CGCTCTGCGGAGGATAGAATGCTATGACATATCTCACACCAGTGGAGCGA
ACGCCGTAGGGTCCATGGCTGTGTTTGTGAATGGGTCGCCGTGTCTATCG
GAGTATCGACGATACAATCTTAGTCGACAGAGCTCGTACCAAGGTCATCC
AGACGACTACGCATGCATTCAGGAGACGCTTGCCAAACGATTCGCACGCA
CAGCAGGTGGGGGCGGGGGCTCTGCAGATGAGGCGCCCCTACCGCAGCTC
ATCATCATCGACGGCGGCAAAGGGCAGCTGAGCAGTGCGGCGGAAGCACT
GCAGAAGGTGGGTTTGCACGGAAGGGTACCGCTGATGAGCATTGCCAAGG
GAGAAGAGGCGGTGTTTGTGGACGGACAGAAGCAGGCGATCAACTACGAC
GCTGCCTCCGGGGGGCACGTGATGAGCGCTGGCGTTGGTCTGATTTGTCG
GCTGCGAGACGAGGCTCACCGAACAGCGCTGAGGGCGCACCGGGACAGGC
GCGGAAAACAAGCGCTGAGGTGCGGGCTTGACTCGGTGTCGGGCCTCGGG
GCGCGGAAGCGGGCGGCGCTGTTGGCGCATTTCAACGGCAGTGTTGAGGC
GGTGGCCAATGCTGTACCGGACGAGCTGGTTCGAGTGCACGGCGTGGGGC
GCGCTCTCGCGCAGAAAATCTACTGTCACTTTCACGACGGCTCAAGTTGA