Gchil2626.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2626.t1
Unique NameGchil2626.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2017224..2018582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2626Gchil2626Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2017224..2018582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2626.t1Gchil2626.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2017224..2018582 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2626.t1.start1Gchil2626.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2017224..2017226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2626.t1.CDS1Gchil2626.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2017224..2017332 +
Gchil2626.t1.CDS2Gchil2626.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2017448..2017862 +
Gchil2626.t1.CDS3Gchil2626.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2017958..2018582 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2626.t1.exon1Gchil2626.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2017224..2017332 +
Gchil2626.t1.exon2Gchil2626.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2017448..2017862 +
Gchil2626.t1.exon3Gchil2626.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2017958..2018582 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2626.t1.intron1Gchil2626.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2017333..2017447 +
Gchil2626.t1.intron2Gchil2626.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2017863..2017957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2626.t1.stop1Gchil2626.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2018580..2018582 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2626.t1 ID=Gchil2626.t1|Name=Gchil2626.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp
MSAPLDAADHTRELRLLRCVARGPLRPRHRRAQHILTVPHALEARLQLWD
DEAEICEQAACAGKALDATAHLLALLLAHFSHIAALRRALFHTPDRLLLV
AVYYCDRALQALLAAVAPLRARMAALFEELSSLRAACFNVRNSAHKAYHL
FANPPSSPALPHPALSHCVHQAHLKALVLKQLANRIASVAQGTPAIFSYL
HTPWATTLAEYQQQQQQQQQQQLQQQQQQQQQQQQQQQQNQPLTPSEVPE
TPESDRVEPLPKTQRSSPKKKPLPSHKRRRHTHHHPRVVVAKTLQMDTPR
RSPACRNPTASVQALVRNAPSQQQHQPTQLPSPVLPAQPPPHAADAREQP
DQNDQCSSAPAPPHTPSNERSAPVSASMSLSV*
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spliced messenger RNA

>Gchil2626.t1 ID=Gchil2626.t1|Name=Gchil2626.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004400_pilon:2017224..2018582+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGCCACTTGATGCTGCCGACCACACGCGCGAGCTGCGTTTGCT
ACGCTGCGTGGCGCGCGGGCCCTTGCGTCCGCGCCACCGTCGCGCCCAGC
ACATTCTCACCGTGCCGCACGCGCTGGAGGCGCGTCTGCAGCTGTGGGAC
GACGAGGCCGAGATCTGCGAGCAGGCGGCGTGCGCGGGAAAGGCGCTGGA
CGCCACCGCCCATCTACTCGCTCTTCTGTTGGCCCACTTCTCCCACATTG
CTGCGTTGCGTCGCGCTCTCTTCCACACCCCCGACCGTCTGTTACTGGTC
GCCGTGTACTATTGCGACCGCGCGTTACAAGCGCTGTTGGCGGCTGTTGC
GCCGCTGCGCGCCCGCATGGCCGCTTTGTTTGAGGAGCTTTCGTCGCTGC
GCGCCGCGTGTTTCAACGTGCGTAACAGCGCGCACAAGGCGTACCACCTG
TTTGCCAACCCGCCTTCGTCGCCAGCCCTGCCTCATCCTGCGCTTTCGCA
TTGTGTGCACCAGGCGCACTTGAAAGCGCTTGTGCTTAAGCAACTTGCCA
ATCGCATCGCCTCCGTCGCCCAGGGcacccccgccatcttctcctacctc
cacaccccgtgggcaaccactctcgccgagtaccaacaacaacaacaaca
acaacaacagcagcagctacagcaacagcagcaacagcagcaacagcagc
aacaacaacaacagcaaaaccagcccctcactccaagcgAGGTGCCCGAG
ACCCCAGAGAGCGATCGCGTCGAGCCTCTGCCAAAGACCCAGCGCTCCTC
TCCAAAGAAAAAGCCCCTTCCGTCACACAAGCGACGCCGCCACACCCACC
ACCACCCTCGCGTAGTCGTCGCCAAGACGCTTCAGATGGACACGCCCCGC
CGCAGCCCCGCCTGTCGCAACCCCACCGCCAGCGTGCAGGCCCTCGTCAG
AAACGCCCCCTCTCAGCAGCAGCACCAGCCCACCCAGCTTCCTTCGCCCG
TTCTCCCCGCACAACCCCCGCCTCACGCAGCCGACGCCCGCGAGCAGCCC
GACCAAAACGACCAGTGCAGCAGCGCCCCCGCTCCTCCTCACACCCCCAG
TAATGAGCGCTCTGCACCTGTGTCTGCGAGTATGTCGCTCTCAGTTTAG
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protein sequence of Gchil2626.t1

>Gchil2626.t1 ID=Gchil2626.t1|Name=Gchil2626.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=383bp
MSAPLDAADHTRELRLLRCVARGPLRPRHRRAQHILTVPHALEARLQLWD
DEAEICEQAACAGKALDATAHLLALLLAHFSHIAALRRALFHTPDRLLLV
AVYYCDRALQALLAAVAPLRARMAALFEELSSLRAACFNVRNSAHKAYHL
FANPPSSPALPHPALSHCVHQAHLKALVLKQLANRIASVAQGTPAIFSYL
HTPWATTLAEYQQQQQQQQQQQLQQQQQQQQQQQQQQQQNQPLTPSEVPE
TPESDRVEPLPKTQRSSPKKKPLPSHKRRRHTHHHPRVVVAKTLQMDTPR
RSPACRNPTASVQALVRNAPSQQQHQPTQLPSPVLPAQPPPHAADAREQP
DQNDQCSSAPAPPHTPSNERSAPVSASMSLSV*
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mRNA from alignment at tig00004400_pilon:2017224..2018582+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2626.t1 ID=Gchil2626.t1|Name=Gchil2626.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at tig00004400_pilon:2017224..2018582+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCGCCACTTGATGCTGCCGACCACACGCGCGAGCTGCGTTTGCT
ACGCTGCGTGGCGCGCGGGCCCTTGCGTCCGCGCCACCGTCGCGCCCAGC
ACATTCTCAGTAAGTCTCAACCGTGCGCAACAAGTCCCCGAGTCCCGCCG
TCCACACTCACCAACAAccccccccccccccccccccccgcttcccgctt
cccgcttccccttcccCGCGCCAGCCGTGCCGCACGCGCTGGAGGCGCGT
CTGCAGCTGTGGGACGACGAGGCCGAGATCTGCGAGCAGGCGGCGTGCGC
GGGAAAGGCGCTGGACGCCACCGCCCATCTACTCGCTCTTCTGTTGGCCC
ACTTCTCCCACATTGCTGCGTTGCGTCGCGCTCTCTTCCACACCCCCGAC
CGTCTGTTACTGGTCGCCGTGTACTATTGCGACCGCGCGTTACAAGCGCT
GTTGGCGGCTGTTGCGCCGCTGCGCGCCCGCATGGCCGCTTTGTTTGAGG
AGCTTTCGTCGCTGCGCGCCGCGTGTTTCAACGTGCGTAACAGCGCGCAC
AAGGCGTACCACCTGTTTGCCAACCCGCCTTCGTCGCCAGCCCTGCCTCA
TCCTGCGCTTTCGCATTGTGTGCACCAGGCGCACTTGAAGTAAGTTGCAA
GTTGCCGTGCGTTGTAGCCGCCCGCCCCTCACCCTACCCATCCACCTCAC
TCACTCGCAACCTCCACGTCTTCCCCGCCCCCAGAGCGCTTGTGCTTAAG
CAACTTGCCAATCGCATCGCCTCCGTCGCCCAGGGcacccccgccatctt
ctcctacctccacaccccgtgggcaaccactctcgccgagtaccaacaac
aacaacaacaacaacaacagcagcagctacagcaacagcagcaacagcag
caacagcagcaacaacaacaacagcaaaaccagcccctcactccaagcgA
GGTGCCCGAGACCCCAGAGAGCGATCGCGTCGAGCCTCTGCCAAAGACCC
AGCGCTCCTCTCCAAAGAAAAAGCCCCTTCCGTCACACAAGCGACGCCGC
CACACCCACCACCACCCTCGCGTAGTCGTCGCCAAGACGCTTCAGATGGA
CACGCCCCGCCGCAGCCCCGCCTGTCGCAACCCCACCGCCAGCGTGCAGG
CCCTCGTCAGAAACGCCCCCTCTCAGCAGCAGCACCAGCCCACCCAGCTT
CCTTCGCCCGTTCTCCCCGCACAACCCCCGCCTCACGCAGCCGACGCCCG
CGAGCAGCCCGACCAAAACGACCAGTGCAGCAGCGCCCCCGCTCCTCCTC
ACACCCCCAGTAATGAGCGCTCTGCACCTGTGTCTGCGAGTATGTCGCTC
TCAGTTTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:2017224..2018582+

>Gchil2626.t1 ID=Gchil2626.t1|Name=Gchil2626.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00004400_pilon:2017224..2018582+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCGCCACTTGATGCTGCCGACCACACGCGCGAGCTGCGTTTGCT
ACGCTGCGTGGCGCGCGGGCCCTTGCGTCCGCGCCACCGTCGCGCCCAGC
ACATTCTCACCGTGCCGCACGCGCTGGAGGCGCGTCTGCAGCTGTGGGAC
GACGAGGCCGAGATCTGCGAGCAGGCGGCGTGCGCGGGAAAGGCGCTGGA
CGCCACCGCCCATCTACTCGCTCTTCTGTTGGCCCACTTCTCCCACATTG
CTGCGTTGCGTCGCGCTCTCTTCCACACCCCCGACCGTCTGTTACTGGTC
GCCGTGTACTATTGCGACCGCGCGTTACAAGCGCTGTTGGCGGCTGTTGC
GCCGCTGCGCGCCCGCATGGCCGCTTTGTTTGAGGAGCTTTCGTCGCTGC
GCGCCGCGTGTTTCAACGTGCGTAACAGCGCGCACAAGGCGTACCACCTG
TTTGCCAACCCGCCTTCGTCGCCAGCCCTGCCTCATCCTGCGCTTTCGCA
TTGTGTGCACCAGGCGCACTTGAAAGCGCTTGTGCTTAAGCAACTTGCCA
ATCGCATCGCCTCCGTCGCCCAGGGcacccccgccatcttctcctacctc
cacaccccgtgggcaaccactctcgccgagtaccaacaacaacaacaaca
acaacaacagcagcagctacagcaacagcagcaacagcagcaacagcagc
aacaacaacaacagcaaaaccagcccctcactccaagcgAGGTGCCCGAG
ACCCCAGAGAGCGATCGCGTCGAGCCTCTGCCAAAGACCCAGCGCTCCTC
TCCAAAGAAAAAGCCCCTTCCGTCACACAAGCGACGCCGCCACACCCACC
ACCACCCTCGCGTAGTCGTCGCCAAGACGCTTCAGATGGACACGCCCCGC
CGCAGCCCCGCCTGTCGCAACCCCACCGCCAGCGTGCAGGCCCTCGTCAG
AAACGCCCCCTCTCAGCAGCAGCACCAGCCCACCCAGCTTCCTTCGCCCG
TTCTCCCCGCACAACCCCCGCCTCACGCAGCCGACGCCCGCGAGCAGCCC
GACCAAAACGACCAGTGCAGCAGCGCCCCCGCTCCTCCTCACACCCCCAG
TAATGAGCGCTCTGCACCTGTGTCTGCGAGTATGTCGCTCTCAGTTTAG
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