Gchil2623.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2623.t1
Unique Name	Gchil2623.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	570

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1894489..1896198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2623	Gchil2623	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1894489..1896198 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2623.t1.start1	Gchil2623.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1894489..1894491 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2623.t1.CDS1	Gchil2623.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1894489..1896198 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2623.t1.exon1	Gchil2623.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1894489..1896198 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2623.t1.stop1	Gchil2623.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1896196..1896198 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2623.t1	Gchil2623.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1894489..1896198 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1894489..1896198+
coding sequence from alignment at tig00004400_pilon:1894489..1896198+

mRNA sequence

>Gchil2623.t1 ID=Gchil2623.t1|Name=Gchil2623.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp
MLNVAGGVLPALGAVFSERTTRESTSRYAARPAQLRPMRAPPEPLLLVPS
RATVVCETALARLAPVRPGIVQIPLESEPRIQNASSVSSGVSSPTRARSV
PRVTAAAFAQRDARFVMGVSTNYVYSFSVGLRDRRVSRLLRATPTSIAVS
PDERFLYVGTSDGYLHVMDSDLSIRVTFLPPEIVSASLGSAFRHAPVSFV
TASSDSALLCYDEGVVCHVNSEGDMLHPPFMAHARRTSGVLCFFEVLALT
IGDATDPSISLFELSTGRCLLRRMLVYAPTCLKRVSRSLNVVSRDGEVCP
SETTFLVGGEEAHVEVFRLVVLSPQKVELNLVYTVSERIRGKDKGVVDLH
YLPEEAMILALLSCGEVRRWHLTRDQASSLTLVEENSFSQPTFTEDNVAE
ATEQDFGLPDYGRHATTNVLKAQTVLATILDEDAIPEQIKDTLVTEFTKE
QSSMVSKLVHCDTELRRARRRILARFTNGIRSDNELGSLVERTLARASKR
MAAMEMECVTRHHSETFRHIQKDAVVKLKTMLKSTFCLPVVVRAYSDALN
QAKRDVECIDPEDMQTGWN*

spliced messenger RNA

>Gchil2623.t1 ID=Gchil2623.t1|Name=Gchil2623.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00004400_pilon:1894489..1896198+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAACGTCGCTGGCGGAGTACTGCCTGCTCTGGGCGCTGTGTTTTC
CGAGCGCACAACGCGTGAATCCACCTCGCGCTACGCTGCGCGCCCCGCAC
AGCTGCGACCAATGCGAGCCCCCCCCGAGCCGTTGCTGTTGGTCCCGTCA
CGAGCTACAGTGGTGTGTGAAACCGCCTTGGCCAGACTTGCACCTGTGCG
TCCTGGCATCGTGCAGATACCGTTGGAGAGTGAGCCACGAATCCAAAATG
CGTCTAGTGTTTCATCGGGCGTCTCATCTCCGACCCGAGCACGCAGTGTG
CCGCGCGTCACGGCTGCTGCCTTCGCGCAGAGAGATGCACGGTTTGTGAT
GGGTGTTTCCACGAATTATGTATACAGCTTCTCCGTGGGCCTTAGGGATA
GGCGCGTTTCGCGTTTGTTGAGAGCGACACCCACTAGTATTGCCGTGTCG
CCCGACGAGCGATTTCTATACGTAGGCACATCTGATGGCTATCTTCATGT
CATGGACTCCGACTTATCGATCCGTGTGACGTTCTTACCACCGGAAATTG
TTAGTGCTTCCTTGGGCTCAGCCTTCCGACATGCGCCTGTGTCTTTTGTG
ACTGCTTCTTCAGACAGTGCATTGCTATGCTACGATGAGGGAGTGGTATG
TCACGTCAATTCGGAGGGCGACATGTTGCATCCTCCTTTCATGGCTCATG
CTCGTCGCACATCAGGTGTACTTTGTTTCTTTGAAGTCCTGGCTCTTACT
ATTGGGGATGCCACAGACCCATCGATCTCTTTGTTTGAGCTTTCTACAGG
ACGATGCCTTCTGCGTAGGATGTTGGTATACGCTCCAACGTGCTTGAAGC
GTGTCAGTAGGTCACTCAACGTCGTTTCAAGAGATGGAGAGGTGTGCCCA
TCAGAAACCACCTTTTTGGTAGGTGGAGAGGAAGCGCATGTAGAAGTTTT
CCGTCTTGTTGTTCTTTCACCTCAGAAAGTGGAACTGAATTTGGTGTATA
CCGTCAGTGAACGCATAAGAGGCAAGGACAAGGGCGTGGTCGACTTGCAC
TACCTTCCTGAGGAAGCTATGATCCTGGCTCTTTTGTCTTGTGGCGAGGT
CAGGAGATGGCATCTGACTCGAGACCAGGCCAGCTCATTGACTTTGGTTG
AAGAAAATTCTTTTTCACAACCCACATTCACGGAAGACAATGTTGCAGAG
GCTACAGAACAGGATTTTGGCCTACCCGATTATGGACGCCATGCAACGAC
GAACGTTCTTAAAGCACAAACGGTGCTTGCTACTATCCTGGACGAAGATG
CTATTCCCGAACAAATTAAAGATACGCTTGTCACGGAGTTTACCAAAGAG
CAGTCTTCCATGGTTTCAAAGCTTGTGCACTGCGACACAGAACTTCGTCG
CGCTCGACGGAGAATCCTTGCTCGGTTTACAAATGGCATACGGTCGGACA
ATGAACTCGGCTCTCTAGTAGAGCGCACTTTGGCTAGGGCCTCGAAACGT
ATGGCCGCAATGGAGATGGAGTGCGTAACCAGACATCACTCTGAAACGTT
TCGGCACATCCAGAAAGACGCTGTTGTGAAACTGAAGACAATGTTGAAGA
GCACTTTCTGTCTCCCTGTTGTGGTAAGGGCATATTCTGATGCTTTAAAC
CAGGCAAAGCGAGATGTGGAATGTATAGATCCAGAAGACATGCAGACCGG
TTGGAACTGA

protein sequence of Gchil2623.t1

>Gchil2623.t1 ID=Gchil2623.t1|Name=Gchil2623.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=570bp
MLNVAGGVLPALGAVFSERTTRESTSRYAARPAQLRPMRAPPEPLLLVPS
RATVVCETALARLAPVRPGIVQIPLESEPRIQNASSVSSGVSSPTRARSV
PRVTAAAFAQRDARFVMGVSTNYVYSFSVGLRDRRVSRLLRATPTSIAVS
PDERFLYVGTSDGYLHVMDSDLSIRVTFLPPEIVSASLGSAFRHAPVSFV
TASSDSALLCYDEGVVCHVNSEGDMLHPPFMAHARRTSGVLCFFEVLALT
IGDATDPSISLFELSTGRCLLRRMLVYAPTCLKRVSRSLNVVSRDGEVCP
SETTFLVGGEEAHVEVFRLVVLSPQKVELNLVYTVSERIRGKDKGVVDLH
YLPEEAMILALLSCGEVRRWHLTRDQASSLTLVEENSFSQPTFTEDNVAE
ATEQDFGLPDYGRHATTNVLKAQTVLATILDEDAIPEQIKDTLVTEFTKE
QSSMVSKLVHCDTELRRARRRILARFTNGIRSDNELGSLVERTLARASKR
MAAMEMECVTRHHSETFRHIQKDAVVKLKTMLKSTFCLPVVVRAYSDALN
QAKRDVECIDPEDMQTGWN*

mRNA from alignment at tig00004400_pilon:1894489..1896198+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2623.t1 ID=Gchil2623.t1|Name=Gchil2623.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00004400_pilon:1894489..1896198+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGAACGTCGCTGGCGGAGTACTGCCTGCTCTGGGCGCTGTGTTTTC
CGAGCGCACAACGCGTGAATCCACCTCGCGCTACGCTGCGCGCCCCGCAC
AGCTGCGACCAATGCGAGCCCCCCCCGAGCCGTTGCTGTTGGTCCCGTCA
CGAGCTACAGTGGTGTGTGAAACCGCCTTGGCCAGACTTGCACCTGTGCG
TCCTGGCATCGTGCAGATACCGTTGGAGAGTGAGCCACGAATCCAAAATG
CGTCTAGTGTTTCATCGGGCGTCTCATCTCCGACCCGAGCACGCAGTGTG
CCGCGCGTCACGGCTGCTGCCTTCGCGCAGAGAGATGCACGGTTTGTGAT
GGGTGTTTCCACGAATTATGTATACAGCTTCTCCGTGGGCCTTAGGGATA
GGCGCGTTTCGCGTTTGTTGAGAGCGACACCCACTAGTATTGCCGTGTCG
CCCGACGAGCGATTTCTATACGTAGGCACATCTGATGGCTATCTTCATGT
CATGGACTCCGACTTATCGATCCGTGTGACGTTCTTACCACCGGAAATTG
TTAGTGCTTCCTTGGGCTCAGCCTTCCGACATGCGCCTGTGTCTTTTGTG
ACTGCTTCTTCAGACAGTGCATTGCTATGCTACGATGAGGGAGTGGTATG
TCACGTCAATTCGGAGGGCGACATGTTGCATCCTCCTTTCATGGCTCATG
CTCGTCGCACATCAGGTGTACTTTGTTTCTTTGAAGTCCTGGCTCTTACT
ATTGGGGATGCCACAGACCCATCGATCTCTTTGTTTGAGCTTTCTACAGG
ACGATGCCTTCTGCGTAGGATGTTGGTATACGCTCCAACGTGCTTGAAGC
GTGTCAGTAGGTCACTCAACGTCGTTTCAAGAGATGGAGAGGTGTGCCCA
TCAGAAACCACCTTTTTGGTAGGTGGAGAGGAAGCGCATGTAGAAGTTTT
CCGTCTTGTTGTTCTTTCACCTCAGAAAGTGGAACTGAATTTGGTGTATA
CCGTCAGTGAACGCATAAGAGGCAAGGACAAGGGCGTGGTCGACTTGCAC
TACCTTCCTGAGGAAGCTATGATCCTGGCTCTTTTGTCTTGTGGCGAGGT
CAGGAGATGGCATCTGACTCGAGACCAGGCCAGCTCATTGACTTTGGTTG
AAGAAAATTCTTTTTCACAACCCACATTCACGGAAGACAATGTTGCAGAG
GCTACAGAACAGGATTTTGGCCTACCCGATTATGGACGCCATGCAACGAC
GAACGTTCTTAAAGCACAAACGGTGCTTGCTACTATCCTGGACGAAGATG
CTATTCCCGAACAAATTAAAGATACGCTTGTCACGGAGTTTACCAAAGAG
CAGTCTTCCATGGTTTCAAAGCTTGTGCACTGCGACACAGAACTTCGTCG
CGCTCGACGGAGAATCCTTGCTCGGTTTACAAATGGCATACGGTCGGACA
ATGAACTCGGCTCTCTAGTAGAGCGCACTTTGGCTAGGGCCTCGAAACGT
ATGGCCGCAATGGAGATGGAGTGCGTAACCAGACATCACTCTGAAACGTT
TCGGCACATCCAGAAAGACGCTGTTGTGAAACTGAAGACAATGTTGAAGA
GCACTTTCTGTCTCCCTGTTGTGGTAAGGGCATATTCTGATGCTTTAAAC
CAGGCAAAGCGAGATGTGGAATGTATAGATCCAGAAGACATGCAGACCGG
TTGGAACTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1894489..1896198+

>Gchil2623.t1 ID=Gchil2623.t1|Name=Gchil2623.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1710bp|location=Sequence derived from alignment at tig00004400_pilon:1894489..1896198+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGAACGTCGCTGGCGGAGTACTGCCTGCTCTGGGCGCTGTGTTTTC
CGAGCGCACAACGCGTGAATCCACCTCGCGCTACGCTGCGCGCCCCGCAC
AGCTGCGACCAATGCGAGCCCCCCCCGAGCCGTTGCTGTTGGTCCCGTCA
CGAGCTACAGTGGTGTGTGAAACCGCCTTGGCCAGACTTGCACCTGTGCG
TCCTGGCATCGTGCAGATACCGTTGGAGAGTGAGCCACGAATCCAAAATG
CGTCTAGTGTTTCATCGGGCGTCTCATCTCCGACCCGAGCACGCAGTGTG
CCGCGCGTCACGGCTGCTGCCTTCGCGCAGAGAGATGCACGGTTTGTGAT
GGGTGTTTCCACGAATTATGTATACAGCTTCTCCGTGGGCCTTAGGGATA
GGCGCGTTTCGCGTTTGTTGAGAGCGACACCCACTAGTATTGCCGTGTCG
CCCGACGAGCGATTTCTATACGTAGGCACATCTGATGGCTATCTTCATGT
CATGGACTCCGACTTATCGATCCGTGTGACGTTCTTACCACCGGAAATTG
TTAGTGCTTCCTTGGGCTCAGCCTTCCGACATGCGCCTGTGTCTTTTGTG
ACTGCTTCTTCAGACAGTGCATTGCTATGCTACGATGAGGGAGTGGTATG
TCACGTCAATTCGGAGGGCGACATGTTGCATCCTCCTTTCATGGCTCATG
CTCGTCGCACATCAGGTGTACTTTGTTTCTTTGAAGTCCTGGCTCTTACT
ATTGGGGATGCCACAGACCCATCGATCTCTTTGTTTGAGCTTTCTACAGG
ACGATGCCTTCTGCGTAGGATGTTGGTATACGCTCCAACGTGCTTGAAGC
GTGTCAGTAGGTCACTCAACGTCGTTTCAAGAGATGGAGAGGTGTGCCCA
TCAGAAACCACCTTTTTGGTAGGTGGAGAGGAAGCGCATGTAGAAGTTTT
CCGTCTTGTTGTTCTTTCACCTCAGAAAGTGGAACTGAATTTGGTGTATA
CCGTCAGTGAACGCATAAGAGGCAAGGACAAGGGCGTGGTCGACTTGCAC
TACCTTCCTGAGGAAGCTATGATCCTGGCTCTTTTGTCTTGTGGCGAGGT
CAGGAGATGGCATCTGACTCGAGACCAGGCCAGCTCATTGACTTTGGTTG
AAGAAAATTCTTTTTCACAACCCACATTCACGGAAGACAATGTTGCAGAG
GCTACAGAACAGGATTTTGGCCTACCCGATTATGGACGCCATGCAACGAC
GAACGTTCTTAAAGCACAAACGGTGCTTGCTACTATCCTGGACGAAGATG
CTATTCCCGAACAAATTAAAGATACGCTTGTCACGGAGTTTACCAAAGAG
CAGTCTTCCATGGTTTCAAAGCTTGTGCACTGCGACACAGAACTTCGTCG
CGCTCGACGGAGAATCCTTGCTCGGTTTACAAATGGCATACGGTCGGACA
ATGAACTCGGCTCTCTAGTAGAGCGCACTTTGGCTAGGGCCTCGAAACGT
ATGGCCGCAATGGAGATGGAGTGCGTAACCAGACATCACTCTGAAACGTT
TCGGCACATCCAGAAAGACGCTGTTGTGAAACTGAAGACAATGTTGAAGA
GCACTTTCTGTCTCCCTGTTGTGGTAAGGGCATATTCTGATGCTTTAAAC
CAGGCAAAGCGAGATGTGGAATGTATAGATCCAGAAGACATGCAGACCGG
TTGGAACTGA