Gchil2620.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2620.t1
Unique NameGchil2620.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1865695..1867365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709000.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue1.91e-97
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2620Gchil2620Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1865695..1867365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2620.t1Gchil2620.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1865695..1867365 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2620.t1.stop1Gchil2620.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1865695..1865697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2620.t1.CDS1Gchil2620.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1865695..1867028 -
Gchil2620.t1.CDS2Gchil2620.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1867107..1867365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2620.t1.exon1Gchil2620.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1865695..1867028 -
Gchil2620.t1.exon2Gchil2620.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1867107..1867365 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2620.t1.intron1Gchil2620.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1867029..1867106 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2620.t1.start1Gchil2620.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1867363..1867365 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2620.t1 ID=Gchil2620.t1|Name=Gchil2620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=531bp
MRRRKRRSAAKSHSVSTPKPRPLVSSKRSSFTSTVLDVIGIRAFKRDAPL
SQPDRRRLVTDVIIAIVLFFITLCTRFHKLEHPAKIVFDEFHFAAFIHNY
MRGEYLFDIHPPFAKLTLTAIAKLTSYDPIPFKFDQLGKPYGQISYYPQR
AFSAALGSLIPSVLYLTSRALSLSTAVAVMTGAMALFDMLLCVESRLILT
DAQLILYVQLSLLFAVLMWKTPKSTPRRYLFVVLTAVFGAFAVATKWTAI
VAPGIIAIVSLTGIVFPKAPLDVLEMILAAVIAISIYMASFWIHFYLLPN
SGPGDAFMAMDFRRTLNGSEFFDATQKAPSFLAKFRYLNWEMFRANRDIT
ARHPWESKWYEWLYNARGILYIDETTGEGLKEQIYLLMNPVLCVVTLGGV
ISSVLMIVLSPWRISRLRKAGDEQSAVKADKLRQSSLQMGVFLVGWVMNL
VPYVGVKRCTFVYHVLPALQMSCVLTALSVQQLPARARTAACTLIICALA
GSFFYFRAWTYGLARSREQLDALRWMKRWN*
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spliced messenger RNA

>Gchil2620.t1 ID=Gchil2620.t1|Name=Gchil2620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00004400_pilon:1865695..1867365- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGTCGCAAGAGAAGGTCTGCTGCCAAGTCCCACTCAGTGTCTAC
ACCCAAACCGCGTCCACTCGTCTCCTCAAAGCGATCGTCCTTCACCTCCA
CCGTGCTAGACGTCATTGGAATACGTGCATTCAAACGTGATGCACCACTC
AGTCAGCCCGATAGAAGACGGCTTGTCACCGATGTTATCATAGCGATTGT
TTTGTTTTTCATAACGTTATGCACTCGTTTTCACAAACTCGAACATCCTG
CGAAGATAGTTTTCGATGAGTTCCATTTTGCTGCGTTTATACACAATTAC
ATGCGGGGGGAATATCTATTTGACATCCATCCTCCGTTTGCGAAGCTTAC
GTTGACGGCAATAGCAAAGTTGACGTCCTATGATCCGATACCCTTCAAAT
TCGACCAGCTAGGAAAGCCTTATGGCCAAATAAGCTACTATCCACAGCGA
GCCTTCTCTGCCGCGCTTGGATCGTTAATTCCAAGCGTGCTGTACTTGAC
TTCAAGAGCGCTCTCGCTGTCCACGGCTGTGGCAGTAATGACTGGAGCAA
TGGCGCTGTTTGACATGCTGCTGTGCGTGGAATCTCGCCTGATTCTCACT
GACGCACAGCTCATTCTTTACGTACAACTGTCGTTGTTGTTTGCTGTGTT
GATGTGGAAAACGCCAAAGAGCACGCCGAGACGGTATCTATTTGTGGTAT
TAACGGCGGTTTTCGGGGCATTTGCAGTGGCGACGAAATGGACGGCGATT
GTGGCACCAGGCATAATTGCCATCGTTTCGCTCACCGGCATAGTATTTCC
GAAAGCGCCGTTGGACGTGTTAGAAATGATTTTGGCAGCAGTGATAGCTA
TTTCAATCTACATGGCTTCGTTTTGGATTCATTTCTACCTTTTACCGAAC
AGTGGGCCGGGTGACGCGTTCATGGCGATGGATTTCAGAAGAACGTTGAA
TGGAAGCGAGTTCTTCGACGCAACGCAGAAAGCGCCGAGTTTCCTGGCGA
AGTTTCGGTATTTGAACTGGGAAATGTTTCGTGCAAACCGAGATATCACT
GCAAGGCACCCTTGGGAGTCAAAATGGTACGAATGGCTTTACAATGCACG
TGGAATTCTTTACATTGATGAAACGACGGGTGAAGGATTGAAAGAGCAGA
TCTACTTGCTGATGAACCCTGTTTTGTGCGTGGTAACGCTTGGCGGGGTG
ATAAGCAGCGTACTGATGATAGTGTTGTCGCCGTGGAGGATATCAAGACT
GAGAAAAGCGGGTGACGAGCAAAGCGCTGTCAAAGCAGACAAGCTTCGTC
AAAGCAGCTTGCAAATGGGAGTGTTTCTGGTGGGATGGGTGATGAATCTC
GTGCCGTACGTCGGGGTGAAACGGTGCACGTTTGTTTACCATGTGTTGCC
AGCTCTGCAAATGTCGTGCGTTCTGACGGCGCTGAGCGTGCAGCAGCTGC
CCGCGCGAGCGCGCACTGCGGCATGCACGCTGATTATTTGCGCGTTGGCG
GGATCGTTCTTCTATTTCCGCGCGTGGACGTACGGGTTAGCTCGGAGCCG
CGAGCAGTTAGACGCGCTTCGCTGGATGAAACGATGGAATTGA
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protein sequence of Gchil2620.t1

>Gchil2620.t1 ID=Gchil2620.t1|Name=Gchil2620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=531bp
MRRRKRRSAAKSHSVSTPKPRPLVSSKRSSFTSTVLDVIGIRAFKRDAPL
SQPDRRRLVTDVIIAIVLFFITLCTRFHKLEHPAKIVFDEFHFAAFIHNY
MRGEYLFDIHPPFAKLTLTAIAKLTSYDPIPFKFDQLGKPYGQISYYPQR
AFSAALGSLIPSVLYLTSRALSLSTAVAVMTGAMALFDMLLCVESRLILT
DAQLILYVQLSLLFAVLMWKTPKSTPRRYLFVVLTAVFGAFAVATKWTAI
VAPGIIAIVSLTGIVFPKAPLDVLEMILAAVIAISIYMASFWIHFYLLPN
SGPGDAFMAMDFRRTLNGSEFFDATQKAPSFLAKFRYLNWEMFRANRDIT
ARHPWESKWYEWLYNARGILYIDETTGEGLKEQIYLLMNPVLCVVTLGGV
ISSVLMIVLSPWRISRLRKAGDEQSAVKADKLRQSSLQMGVFLVGWVMNL
VPYVGVKRCTFVYHVLPALQMSCVLTALSVQQLPARARTAACTLIICALA
GSFFYFRAWTYGLARSREQLDALRWMKRWN*
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mRNA from alignment at tig00004400_pilon:1865695..1867365-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2620.t1 ID=Gchil2620.t1|Name=Gchil2620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00004400_pilon:1865695..1867365- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGTCGCAAGAGAAGGTCTGCTGCCAAGTCCCACTCAGTGTCTAC
ACCCAAACCGCGTCCACTCGTCTCCTCAAAGCGATCGTCCTTCACCTCCA
CCGTGCTAGACGTCATTGGAATACGTGCATTCAAACGTGATGCACCACTC
AGTCAGCCCGATAGAAGACGGCTTGTCACCGATGTTATCATAGCGATTGT
TTTGTTTTTCATAACGTTATGCACTCGTTTTCACAAACTCGAACATCCTG
CGAAGATAGGTACGTAATGTGCGTCTCTTTTCATGAAGGGCCTTCCATTT
TATTGTTTTGTTGGCTGACTGTTGTGAACGGCTCTAGTTTTCGATGAGTT
CCATTTTGCTGCGTTTATACACAATTACATGCGGGGGGAATATCTATTTG
ACATCCATCCTCCGTTTGCGAAGCTTACGTTGACGGCAATAGCAAAGTTG
ACGTCCTATGATCCGATACCCTTCAAATTCGACCAGCTAGGAAAGCCTTA
TGGCCAAATAAGCTACTATCCACAGCGAGCCTTCTCTGCCGCGCTTGGAT
CGTTAATTCCAAGCGTGCTGTACTTGACTTCAAGAGCGCTCTCGCTGTCC
ACGGCTGTGGCAGTAATGACTGGAGCAATGGCGCTGTTTGACATGCTGCT
GTGCGTGGAATCTCGCCTGATTCTCACTGACGCACAGCTCATTCTTTACG
TACAACTGTCGTTGTTGTTTGCTGTGTTGATGTGGAAAACGCCAAAGAGC
ACGCCGAGACGGTATCTATTTGTGGTATTAACGGCGGTTTTCGGGGCATT
TGCAGTGGCGACGAAATGGACGGCGATTGTGGCACCAGGCATAATTGCCA
TCGTTTCGCTCACCGGCATAGTATTTCCGAAAGCGCCGTTGGACGTGTTA
GAAATGATTTTGGCAGCAGTGATAGCTATTTCAATCTACATGGCTTCGTT
TTGGATTCATTTCTACCTTTTACCGAACAGTGGGCCGGGTGACGCGTTCA
TGGCGATGGATTTCAGAAGAACGTTGAATGGAAGCGAGTTCTTCGACGCA
ACGCAGAAAGCGCCGAGTTTCCTGGCGAAGTTTCGGTATTTGAACTGGGA
AATGTTTCGTGCAAACCGAGATATCACTGCAAGGCACCCTTGGGAGTCAA
AATGGTACGAATGGCTTTACAATGCACGTGGAATTCTTTACATTGATGAA
ACGACGGGTGAAGGATTGAAAGAGCAGATCTACTTGCTGATGAACCCTGT
TTTGTGCGTGGTAACGCTTGGCGGGGTGATAAGCAGCGTACTGATGATAG
TGTTGTCGCCGTGGAGGATATCAAGACTGAGAAAAGCGGGTGACGAGCAA
AGCGCTGTCAAAGCAGACAAGCTTCGTCAAAGCAGCTTGCAAATGGGAGT
GTTTCTGGTGGGATGGGTGATGAATCTCGTGCCGTACGTCGGGGTGAAAC
GGTGCACGTTTGTTTACCATGTGTTGCCAGCTCTGCAAATGTCGTGCGTT
CTGACGGCGCTGAGCGTGCAGCAGCTGCCCGCGCGAGCGCGCACTGCGGC
ATGCACGCTGATTATTTGCGCGTTGGCGGGATCGTTCTTCTATTTCCGCG
CGTGGACGTACGGGTTAGCTCGGAGCCGCGAGCAGTTAGACGCGCTTCGC
TGGATGAAACGATGGAATTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1865695..1867365-

>Gchil2620.t1 ID=Gchil2620.t1|Name=Gchil2620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1593bp|location=Sequence derived from alignment at tig00004400_pilon:1865695..1867365- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGTCGCAAGAGAAGGTCTGCTGCCAAGTCCCACTCAGTGTCTAC
ACCCAAACCGCGTCCACTCGTCTCCTCAAAGCGATCGTCCTTCACCTCCA
CCGTGCTAGACGTCATTGGAATACGTGCATTCAAACGTGATGCACCACTC
AGTCAGCCCGATAGAAGACGGCTTGTCACCGATGTTATCATAGCGATTGT
TTTGTTTTTCATAACGTTATGCACTCGTTTTCACAAACTCGAACATCCTG
CGAAGATAGTTTTCGATGAGTTCCATTTTGCTGCGTTTATACACAATTAC
ATGCGGGGGGAATATCTATTTGACATCCATCCTCCGTTTGCGAAGCTTAC
GTTGACGGCAATAGCAAAGTTGACGTCCTATGATCCGATACCCTTCAAAT
TCGACCAGCTAGGAAAGCCTTATGGCCAAATAAGCTACTATCCACAGCGA
GCCTTCTCTGCCGCGCTTGGATCGTTAATTCCAAGCGTGCTGTACTTGAC
TTCAAGAGCGCTCTCGCTGTCCACGGCTGTGGCAGTAATGACTGGAGCAA
TGGCGCTGTTTGACATGCTGCTGTGCGTGGAATCTCGCCTGATTCTCACT
GACGCACAGCTCATTCTTTACGTACAACTGTCGTTGTTGTTTGCTGTGTT
GATGTGGAAAACGCCAAAGAGCACGCCGAGACGGTATCTATTTGTGGTAT
TAACGGCGGTTTTCGGGGCATTTGCAGTGGCGACGAAATGGACGGCGATT
GTGGCACCAGGCATAATTGCCATCGTTTCGCTCACCGGCATAGTATTTCC
GAAAGCGCCGTTGGACGTGTTAGAAATGATTTTGGCAGCAGTGATAGCTA
TTTCAATCTACATGGCTTCGTTTTGGATTCATTTCTACCTTTTACCGAAC
AGTGGGCCGGGTGACGCGTTCATGGCGATGGATTTCAGAAGAACGTTGAA
TGGAAGCGAGTTCTTCGACGCAACGCAGAAAGCGCCGAGTTTCCTGGCGA
AGTTTCGGTATTTGAACTGGGAAATGTTTCGTGCAAACCGAGATATCACT
GCAAGGCACCCTTGGGAGTCAAAATGGTACGAATGGCTTTACAATGCACG
TGGAATTCTTTACATTGATGAAACGACGGGTGAAGGATTGAAAGAGCAGA
TCTACTTGCTGATGAACCCTGTTTTGTGCGTGGTAACGCTTGGCGGGGTG
ATAAGCAGCGTACTGATGATAGTGTTGTCGCCGTGGAGGATATCAAGACT
GAGAAAAGCGGGTGACGAGCAAAGCGCTGTCAAAGCAGACAAGCTTCGTC
AAAGCAGCTTGCAAATGGGAGTGTTTCTGGTGGGATGGGTGATGAATCTC
GTGCCGTACGTCGGGGTGAAACGGTGCACGTTTGTTTACCATGTGTTGCC
AGCTCTGCAAATGTCGTGCGTTCTGACGGCGCTGAGCGTGCAGCAGCTGC
CCGCGCGAGCGCGCACTGCGGCATGCACGCTGATTATTTGCGCGTTGGCG
GGATCGTTCTTCTATTTCCGCGCGTGGACGTACGGGTTAGCTCGGAGCCG
CGAGCAGTTAGACGCGCTTCGCTGGATGAAACGATGGAATTGA
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