Gchil2618.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2618.t1
Unique NameGchil2618.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1862159..1863256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML29629a-PA
PFAMsAnk_2,Ank_4
Max annot lvl2759|Eukaryota
KEGG koko:K21415
Evalue1.65e-24
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryI
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2618Gchil2618Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1862159..1863256 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2618.t1.stop1Gchil2618.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1862159..1862161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2618.t1.CDS1Gchil2618.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1862159..1863256 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2618.t1.exon1Gchil2618.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1862159..1863256 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2618.t1.start1Gchil2618.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1863254..1863256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2618.t1Gchil2618.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1862159..1863256 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2618.t1 ID=Gchil2618.t1|Name=Gchil2618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MRRVRRNAQSPSTAATAATATAATATASDVPLVEDEQLRSSIEAMCDSVC
SPLSPTAWQAVQHALDAAQSDPFGDGDQSALASLTFHPLRKAWATGLDAR
DIVLTKSASRNLHRAAWDADVKSVHALIRAAREKLHRGHSNALTHLLERR
LSNLRLPPLHYACFSARSRSYISERDTNNYVAVVHALCRAGARVDSRDIA
GYTPLSIASSFLSNPTTLRMARVLVAYGADPNATTRFGEPIIVSSIIGAN
TDAFATLLRAGVDLTIPDRTGVSTREMASKWPVLEAVVTQVQRERAVSDK
ICDVCGRAGVTKFCASCQKVYYCSRECQRDGWRAGHRERCTTASCVPSEH
DITSPIISDKDVPSL*
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spliced messenger RNA

>Gchil2618.t1 ID=Gchil2618.t1|Name=Gchil2618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004400_pilon:1862159..1863256- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGTGTCAGGCGGAACGCGCAGTCCCCTTCCACCGCCGCCACCGC
CGCCACCGCCACCGCCGCCACCGCCACCGCATCCGATGTCCCGCTCGTCG
AAGATGAGCAGCTGCGCAGCTCAATCGAGGCCATGTGCGACAGCGTGTGC
TCCCCGCTGTCCCCCACTGCCTGGCAAGCCGTGCAGCACGCCTTGGATGC
CGCACAATCCGACCCCTTTGGCGATGGCGACCAGTCCGCCCTCGCCAGTC
TCACCTTCCATCCCTTGAGAAAGGCCTGGGCAACCGGTCTTGATGCCCGC
GACATCGTCCTCACCAAATCTGCTTCGCGTAATCTCCACCGCGCCGCCTG
GGATGCTGACGTCAAGTCCGTCCACGCCCTCATCCGCGCCGCGCGCGAAA
AACTGCATCGCGGCCATTCGAATGCCCTTACACATTTGCTTGAGCGTCGG
CTCTCTAACTTGAGGCTCCCCCCGTTGCATTACGCCTGTTTCAGCGCTAG
ATCTCGCTCGTATATTTCGGAGCGTGATACCAATAACTACGTTGCCGTCG
TTCACGCCCTGTGTCGCGCGGGCGCCCGTGTCGACTCGCGTGACATCGCA
GGCTATACCCCGCTTAGTATTGCTTCCAGCTTTCTTTCTAACCCCACTAC
GCTGCGAATGGCGCGCGTCTTGGTCGCCTACGGAGCTGATCCAAATGCAA
CTACCCGCTTTGGAGAGCCCATCATCGTGTCGAGTATCATAGGCGCCAAC
ACTGACGCCTTTGCTACATTGCTTCGCGCAGGCGTTGACTTGACAATACC
GGACCGAACCGGAGTCAGTACCCGCGAAATGGCCTCGAAATGGCCTGTTC
TTGAAGCCGTTGTGACTCAAGTCCAACGTGAACGCGCTGTTTCCGACAAG
ATCTGCGACGTGTGTGGACGCGCTGGTGTCACCAAGTTTTGTGCCTCTTG
TCAAAAGGTCTACTACTGTTCTCGAGAATGTCAGCGCGATGGTTGGCGAG
CGGGCCATCGCGAGAGATGTACTACCGCTTCGTGCGTCCCTTCCGAACAC
GATATAACATCTCCCATCATCTCTGACAAGGATGTTCCGAGCTTGTAG
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protein sequence of Gchil2618.t1

>Gchil2618.t1 ID=Gchil2618.t1|Name=Gchil2618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MRRVRRNAQSPSTAATAATATAATATASDVPLVEDEQLRSSIEAMCDSVC
SPLSPTAWQAVQHALDAAQSDPFGDGDQSALASLTFHPLRKAWATGLDAR
DIVLTKSASRNLHRAAWDADVKSVHALIRAAREKLHRGHSNALTHLLERR
LSNLRLPPLHYACFSARSRSYISERDTNNYVAVVHALCRAGARVDSRDIA
GYTPLSIASSFLSNPTTLRMARVLVAYGADPNATTRFGEPIIVSSIIGAN
TDAFATLLRAGVDLTIPDRTGVSTREMASKWPVLEAVVTQVQRERAVSDK
ICDVCGRAGVTKFCASCQKVYYCSRECQRDGWRAGHRERCTTASCVPSEH
DITSPIISDKDVPSL*
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mRNA from alignment at tig00004400_pilon:1862159..1863256-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2618.t1 ID=Gchil2618.t1|Name=Gchil2618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004400_pilon:1862159..1863256- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCGTGTCAGGCGGAACGCGCAGTCCCCTTCCACCGCCGCCACCGC
CGCCACCGCCACCGCCGCCACCGCCACCGCATCCGATGTCCCGCTCGTCG
AAGATGAGCAGCTGCGCAGCTCAATCGAGGCCATGTGCGACAGCGTGTGC
TCCCCGCTGTCCCCCACTGCCTGGCAAGCCGTGCAGCACGCCTTGGATGC
CGCACAATCCGACCCCTTTGGCGATGGCGACCAGTCCGCCCTCGCCAGTC
TCACCTTCCATCCCTTGAGAAAGGCCTGGGCAACCGGTCTTGATGCCCGC
GACATCGTCCTCACCAAATCTGCTTCGCGTAATCTCCACCGCGCCGCCTG
GGATGCTGACGTCAAGTCCGTCCACGCCCTCATCCGCGCCGCGCGCGAAA
AACTGCATCGCGGCCATTCGAATGCCCTTACACATTTGCTTGAGCGTCGG
CTCTCTAACTTGAGGCTCCCCCCGTTGCATTACGCCTGTTTCAGCGCTAG
ATCTCGCTCGTATATTTCGGAGCGTGATACCAATAACTACGTTGCCGTCG
TTCACGCCCTGTGTCGCGCGGGCGCCCGTGTCGACTCGCGTGACATCGCA
GGCTATACCCCGCTTAGTATTGCTTCCAGCTTTCTTTCTAACCCCACTAC
GCTGCGAATGGCGCGCGTCTTGGTCGCCTACGGAGCTGATCCAAATGCAA
CTACCCGCTTTGGAGAGCCCATCATCGTGTCGAGTATCATAGGCGCCAAC
ACTGACGCCTTTGCTACATTGCTTCGCGCAGGCGTTGACTTGACAATACC
GGACCGAACCGGAGTCAGTACCCGCGAAATGGCCTCGAAATGGCCTGTTC
TTGAAGCCGTTGTGACTCAAGTCCAACGTGAACGCGCTGTTTCCGACAAG
ATCTGCGACGTGTGTGGACGCGCTGGTGTCACCAAGTTTTGTGCCTCTTG
TCAAAAGGTCTACTACTGTTCTCGAGAATGTCAGCGCGATGGTTGGCGAG
CGGGCCATCGCGAGAGATGTACTACCGCTTCGTGCGTCCCTTCCGAACAC
GATATAACATCTCCCATCATCTCTGACAAGGATGTTCCGAGCTTGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1862159..1863256-

>Gchil2618.t1 ID=Gchil2618.t1|Name=Gchil2618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00004400_pilon:1862159..1863256- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCGTGTCAGGCGGAACGCGCAGTCCCCTTCCACCGCCGCCACCGC
CGCCACCGCCACCGCCGCCACCGCCACCGCATCCGATGTCCCGCTCGTCG
AAGATGAGCAGCTGCGCAGCTCAATCGAGGCCATGTGCGACAGCGTGTGC
TCCCCGCTGTCCCCCACTGCCTGGCAAGCCGTGCAGCACGCCTTGGATGC
CGCACAATCCGACCCCTTTGGCGATGGCGACCAGTCCGCCCTCGCCAGTC
TCACCTTCCATCCCTTGAGAAAGGCCTGGGCAACCGGTCTTGATGCCCGC
GACATCGTCCTCACCAAATCTGCTTCGCGTAATCTCCACCGCGCCGCCTG
GGATGCTGACGTCAAGTCCGTCCACGCCCTCATCCGCGCCGCGCGCGAAA
AACTGCATCGCGGCCATTCGAATGCCCTTACACATTTGCTTGAGCGTCGG
CTCTCTAACTTGAGGCTCCCCCCGTTGCATTACGCCTGTTTCAGCGCTAG
ATCTCGCTCGTATATTTCGGAGCGTGATACCAATAACTACGTTGCCGTCG
TTCACGCCCTGTGTCGCGCGGGCGCCCGTGTCGACTCGCGTGACATCGCA
GGCTATACCCCGCTTAGTATTGCTTCCAGCTTTCTTTCTAACCCCACTAC
GCTGCGAATGGCGCGCGTCTTGGTCGCCTACGGAGCTGATCCAAATGCAA
CTACCCGCTTTGGAGAGCCCATCATCGTGTCGAGTATCATAGGCGCCAAC
ACTGACGCCTTTGCTACATTGCTTCGCGCAGGCGTTGACTTGACAATACC
GGACCGAACCGGAGTCAGTACCCGCGAAATGGCCTCGAAATGGCCTGTTC
TTGAAGCCGTTGTGACTCAAGTCCAACGTGAACGCGCTGTTTCCGACAAG
ATCTGCGACGTGTGTGGACGCGCTGGTGTCACCAAGTTTTGTGCCTCTTG
TCAAAAGGTCTACTACTGTTCTCGAGAATGTCAGCGCGATGGTTGGCGAG
CGGGCCATCGCGAGAGATGTACTACCGCTTCGTGCGTCCCTTCCGAACAC
GATATAACATCTCCCATCATCTCTGACAAGGATGTTCCGAGCTTGTAG
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