Gchil2615.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2615.t1
Unique Name	Gchil2615.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	550

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1855879..1857528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_92474
PFAMs	Pyr_redox_2,Thioredoxin
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00013,RC02518,RC02873
KEGG ko	ko:K00384,ko:K03671
KEGG Reaction	R02016,R03596,R09372
KEGG Pathway	ko00450,ko04621,ko05418,map00450,map04621,map05418
GOs	GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006109,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009889,GO:0009987,GO:0010380,GO:0010556,GO:0010581,GO:0010675,GO:0010962,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019222,GO:0019725,GO:0030234,GO:0031323,GO:0031326,GO:0032881,GO:0032885,GO:0042221,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051186,GO:0051187,GO:0051193,GO:0051716,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0072593,GO:0080090,GO:0090056,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1901401,GO:1901463,GO:1990748,GO:2000112,GO:2000904
Evalue	3.28e-168
EggNOG OGs	COG0492@1\|root,COG0526@1\|root,KOG0404@2759\|Eukaryota,KOG0907@2759\|Eukaryota
EC	1.8.1.9
Description	cell redox homeostasis
COG category	CO
BRITE	ko00000,ko00001,ko01000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2615	Gchil2615	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1855879..1857528 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2615.t1.start1	Gchil2615.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1855879..1855881 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2615.t1.CDS1	Gchil2615.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1855879..1857528 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2615.t1.exon1	Gchil2615.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1855879..1857528 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2615.t1.stop1	Gchil2615.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1857526..1857528 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2615.t1	Gchil2615.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1855879..1857528 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1855879..1857528+
coding sequence from alignment at tig00004400_pilon:1855879..1857528+

mRNA sequence

>Gchil2615.t1 ID=Gchil2615.t1|Name=Gchil2615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=550bp
MATISPAFTDSLSLSPAGKRYNSIVPRSAARLLSPQIARNPRRCRTRAEA
AAPVTKPAPPQTQNTSSPKSAPVENVVIIGSGPAGYTAAIYAARANLRPL
VLEGMASGVPGGQLMTTSDVENFPGFPKGISGPQLMSHMREQAARWGSQL
LTDDAVAADLDTYPFRITTRESGVVRTNAVIVATGASAKRLAIPGEQTLW
GSGISACAICDGAAPIFSGQHLAVVGGGDSACEEAVYLCKYASHVHLFVR
SSQLRASKTLCDRVLNHPSVTVHFNTIVLSAQPDATALQNGKGSPLHSVL
VRKGDGSEHSVAVRGLFYAIGHRPNTHFLRGNSRLRFDGAGYLVTTAGSP
ETGLEGVFAAGDVADSQWRQAVTAAGSGCMAALAAERYLTHRGLAVEYRR
DEQQSPAAAAVEERESAQELESDRRGADDESNYDIQNTWHSGQYALRKLY
HESKRPLIVKYVSPGCGPCKQLKPMLNAVVRAYEGHVHYVEIDITKDVEI
AEAAGVSGSPTVHIFHEKSLIKEFRGVKMKSEYRRVVEKLLDGRKVAVM*

spliced messenger RNA

>Gchil2615.t1 ID=Gchil2615.t1|Name=Gchil2615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004400_pilon:1855879..1857528+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCATATCTCCCGCATTCACAGACTCGCTCTCACTCTCGCCAGC
TGGCAAGCGGTACAATTCCATTGTCCCTCGCTCTGCGGCGCGTCTGCTGT
CACCCCAAATTGCGCGCAATCCTCGTCGCTGTCGTACGCGCGCCGAAGCC
GCCGCGCCCGTTACCAAGCCAGCACCTCCACAAACACAGAATACCTCCTC
CCCCAAGTCGGCGCCAGTTGAAAATGTTGTCATCATCGGTTCTGGCCCTG
CCGGTTACACCGCCGCCATCTACGCGGCGCGTGCTAACCTTCGCCCACTC
GTGCTGGAGGGAATGGCATCTGGTGTTCCCGGCGGCCAACTCATGACCAC
ATCTGACGTGGAAAACTTCCCGGGCTTTCCTAAGGGAATTTCGGGGCCGC
AACTCATGTCGCACATGCGTGAACAGGCCGCGCGTTGGGGCTCGCAGCTG
CTCACCGATGATGCCGTAGCTGCTGATCTGGACACATATCCATTTCGCAT
CACCACCAGGGAGTCTGGCGTGGTGCGCACAAACGCTGTCATCGTTGCCA
CTGGTGCGAGCGCCAAGCGACTAGCCATTCCGGGAGAACAAACTTTGTGG
GGCAGCGGCATTTCTGCCTGCGCAATATGCGACGGTGCAGCCCCCATCTT
TTCTGGGCAGCATCTCGCCGTAGTGGGCGGCGGCGATTCAGCTTGTGAGG
AAGCAGTGTATTTATGCAAGTATGCATCTCATGTGCATCTTTTTGTGCGT
TCTTCGCAGCTGCGCGCCAGCAAGACGCTGTGCGATCGCGTGCTCAACCA
TCCCAGCGTAACAGTGCACTTCAATACTATTGTTCTATCAGCACAGCCAG
ACGCAACCGCACTTCAGAACGGCAAGGGCTCACCGTTGCACTCGGTCCTA
GTGCGAAAGGGCGACGGCAGCGAGCACTCAGTGGCGGTGCGTGGTCTGTT
TTACGCTATCGGACACAGACCTAACACCCATTTTCTTCGCGGAAATTCCA
GGCTTCGATTCGACGGTGCCGGGTACCTTGTAACCACCGCGGGCAGCCCA
GAGACGGGACTGGAGGGCGTGTTTGCGGCAGGTGATGTAGCAGACTCGCA
GTGGAGACAGGCGGTGACTGCAGCCGGTAGCGGATGTATGGCAGCACTGG
CCGCAGAGCGTTACCTGACGCACCGCGGACTTGCTGTGGAGTACAGGCGC
GACGAGCAACAGTCACCAGCGGCGGCGGCTGTGGAGGAGCGTGAGAGTGC
ACAGGAACTGGAAAGCGACCGCAGAGGAGCGGATGATGAGAGCAACTACG
ACATTCAAAACACATGGCACAGCGGGCAGTATGCACTACGGAAACTGTAT
CATGAAAGCAAGCGTCCGCTGATTGTGAAATATGTGTCTCCCGGGTGTGG
ACCATGCAAGCAGCTGAAGCCGATGCTGAATGCTGTTGTGCGCGCGTATG
AGGGTCACGTGCATTATGTGGAGATTGACATAACAAAAGATGTTGAGATT
GCCGAGGCTGCGGGGGTAAGCGGGTCTCCCACGGTGCACATCTTCCATGA
GAAGAGCCTGATTAAGGAGTTTCGAGGGGTGAAGATGAAATCGGAGTACC
GACGGGTAGTGGAGAAACTGCTAGATGGCAGGAAGGTTGCTGTGATGTAG

protein sequence of Gchil2615.t1

>Gchil2615.t1 ID=Gchil2615.t1|Name=Gchil2615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=550bp
MATISPAFTDSLSLSPAGKRYNSIVPRSAARLLSPQIARNPRRCRTRAEA
AAPVTKPAPPQTQNTSSPKSAPVENVVIIGSGPAGYTAAIYAARANLRPL
VLEGMASGVPGGQLMTTSDVENFPGFPKGISGPQLMSHMREQAARWGSQL
LTDDAVAADLDTYPFRITTRESGVVRTNAVIVATGASAKRLAIPGEQTLW
GSGISACAICDGAAPIFSGQHLAVVGGGDSACEEAVYLCKYASHVHLFVR
SSQLRASKTLCDRVLNHPSVTVHFNTIVLSAQPDATALQNGKGSPLHSVL
VRKGDGSEHSVAVRGLFYAIGHRPNTHFLRGNSRLRFDGAGYLVTTAGSP
ETGLEGVFAAGDVADSQWRQAVTAAGSGCMAALAAERYLTHRGLAVEYRR
DEQQSPAAAAVEERESAQELESDRRGADDESNYDIQNTWHSGQYALRKLY
HESKRPLIVKYVSPGCGPCKQLKPMLNAVVRAYEGHVHYVEIDITKDVEI
AEAAGVSGSPTVHIFHEKSLIKEFRGVKMKSEYRRVVEKLLDGRKVAVM*

mRNA from alignment at tig00004400_pilon:1855879..1857528+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2615.t1 ID=Gchil2615.t1|Name=Gchil2615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004400_pilon:1855879..1857528+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACCATATCTCCCGCATTCACAGACTCGCTCTCACTCTCGCCAGC
TGGCAAGCGGTACAATTCCATTGTCCCTCGCTCTGCGGCGCGTCTGCTGT
CACCCCAAATTGCGCGCAATCCTCGTCGCTGTCGTACGCGCGCCGAAGCC
GCCGCGCCCGTTACCAAGCCAGCACCTCCACAAACACAGAATACCTCCTC
CCCCAAGTCGGCGCCAGTTGAAAATGTTGTCATCATCGGTTCTGGCCCTG
CCGGTTACACCGCCGCCATCTACGCGGCGCGTGCTAACCTTCGCCCACTC
GTGCTGGAGGGAATGGCATCTGGTGTTCCCGGCGGCCAACTCATGACCAC
ATCTGACGTGGAAAACTTCCCGGGCTTTCCTAAGGGAATTTCGGGGCCGC
AACTCATGTCGCACATGCGTGAACAGGCCGCGCGTTGGGGCTCGCAGCTG
CTCACCGATGATGCCGTAGCTGCTGATCTGGACACATATCCATTTCGCAT
CACCACCAGGGAGTCTGGCGTGGTGCGCACAAACGCTGTCATCGTTGCCA
CTGGTGCGAGCGCCAAGCGACTAGCCATTCCGGGAGAACAAACTTTGTGG
GGCAGCGGCATTTCTGCCTGCGCAATATGCGACGGTGCAGCCCCCATCTT
TTCTGGGCAGCATCTCGCCGTAGTGGGCGGCGGCGATTCAGCTTGTGAGG
AAGCAGTGTATTTATGCAAGTATGCATCTCATGTGCATCTTTTTGTGCGT
TCTTCGCAGCTGCGCGCCAGCAAGACGCTGTGCGATCGCGTGCTCAACCA
TCCCAGCGTAACAGTGCACTTCAATACTATTGTTCTATCAGCACAGCCAG
ACGCAACCGCACTTCAGAACGGCAAGGGCTCACCGTTGCACTCGGTCCTA
GTGCGAAAGGGCGACGGCAGCGAGCACTCAGTGGCGGTGCGTGGTCTGTT
TTACGCTATCGGACACAGACCTAACACCCATTTTCTTCGCGGAAATTCCA
GGCTTCGATTCGACGGTGCCGGGTACCTTGTAACCACCGCGGGCAGCCCA
GAGACGGGACTGGAGGGCGTGTTTGCGGCAGGTGATGTAGCAGACTCGCA
GTGGAGACAGGCGGTGACTGCAGCCGGTAGCGGATGTATGGCAGCACTGG
CCGCAGAGCGTTACCTGACGCACCGCGGACTTGCTGTGGAGTACAGGCGC
GACGAGCAACAGTCACCAGCGGCGGCGGCTGTGGAGGAGCGTGAGAGTGC
ACAGGAACTGGAAAGCGACCGCAGAGGAGCGGATGATGAGAGCAACTACG
ACATTCAAAACACATGGCACAGCGGGCAGTATGCACTACGGAAACTGTAT
CATGAAAGCAAGCGTCCGCTGATTGTGAAATATGTGTCTCCCGGGTGTGG
ACCATGCAAGCAGCTGAAGCCGATGCTGAATGCTGTTGTGCGCGCGTATG
AGGGTCACGTGCATTATGTGGAGATTGACATAACAAAAGATGTTGAGATT
GCCGAGGCTGCGGGGGTAAGCGGGTCTCCCACGGTGCACATCTTCCATGA
GAAGAGCCTGATTAAGGAGTTTCGAGGGGTGAAGATGAAATCGGAGTACC
GACGGGTAGTGGAGAAACTGCTAGATGGCAGGAAGGTTGCTGTGATGTAG

Coding sequence (CDS) from alignment at tig00004400_pilon:1855879..1857528+

>Gchil2615.t1 ID=Gchil2615.t1|Name=Gchil2615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1650bp|location=Sequence derived from alignment at tig00004400_pilon:1855879..1857528+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACCATATCTCCCGCATTCACAGACTCGCTCTCACTCTCGCCAGC
TGGCAAGCGGTACAATTCCATTGTCCCTCGCTCTGCGGCGCGTCTGCTGT
CACCCCAAATTGCGCGCAATCCTCGTCGCTGTCGTACGCGCGCCGAAGCC
GCCGCGCCCGTTACCAAGCCAGCACCTCCACAAACACAGAATACCTCCTC
CCCCAAGTCGGCGCCAGTTGAAAATGTTGTCATCATCGGTTCTGGCCCTG
CCGGTTACACCGCCGCCATCTACGCGGCGCGTGCTAACCTTCGCCCACTC
GTGCTGGAGGGAATGGCATCTGGTGTTCCCGGCGGCCAACTCATGACCAC
ATCTGACGTGGAAAACTTCCCGGGCTTTCCTAAGGGAATTTCGGGGCCGC
AACTCATGTCGCACATGCGTGAACAGGCCGCGCGTTGGGGCTCGCAGCTG
CTCACCGATGATGCCGTAGCTGCTGATCTGGACACATATCCATTTCGCAT
CACCACCAGGGAGTCTGGCGTGGTGCGCACAAACGCTGTCATCGTTGCCA
CTGGTGCGAGCGCCAAGCGACTAGCCATTCCGGGAGAACAAACTTTGTGG
GGCAGCGGCATTTCTGCCTGCGCAATATGCGACGGTGCAGCCCCCATCTT
TTCTGGGCAGCATCTCGCCGTAGTGGGCGGCGGCGATTCAGCTTGTGAGG
AAGCAGTGTATTTATGCAAGTATGCATCTCATGTGCATCTTTTTGTGCGT
TCTTCGCAGCTGCGCGCCAGCAAGACGCTGTGCGATCGCGTGCTCAACCA
TCCCAGCGTAACAGTGCACTTCAATACTATTGTTCTATCAGCACAGCCAG
ACGCAACCGCACTTCAGAACGGCAAGGGCTCACCGTTGCACTCGGTCCTA
GTGCGAAAGGGCGACGGCAGCGAGCACTCAGTGGCGGTGCGTGGTCTGTT
TTACGCTATCGGACACAGACCTAACACCCATTTTCTTCGCGGAAATTCCA
GGCTTCGATTCGACGGTGCCGGGTACCTTGTAACCACCGCGGGCAGCCCA
GAGACGGGACTGGAGGGCGTGTTTGCGGCAGGTGATGTAGCAGACTCGCA
GTGGAGACAGGCGGTGACTGCAGCCGGTAGCGGATGTATGGCAGCACTGG
CCGCAGAGCGTTACCTGACGCACCGCGGACTTGCTGTGGAGTACAGGCGC
GACGAGCAACAGTCACCAGCGGCGGCGGCTGTGGAGGAGCGTGAGAGTGC
ACAGGAACTGGAAAGCGACCGCAGAGGAGCGGATGATGAGAGCAACTACG
ACATTCAAAACACATGGCACAGCGGGCAGTATGCACTACGGAAACTGTAT
CATGAAAGCAAGCGTCCGCTGATTGTGAAATATGTGTCTCCCGGGTGTGG
ACCATGCAAGCAGCTGAAGCCGATGCTGAATGCTGTTGTGCGCGCGTATG
AGGGTCACGTGCATTATGTGGAGATTGACATAACAAAAGATGTTGAGATT
GCCGAGGCTGCGGGGGTAAGCGGGTCTCCCACGGTGCACATCTTCCATGA
GAAGAGCCTGATTAAGGAGTTTCGAGGGGTGAAGATGAAATCGGAGTACC
GACGGGTAGTGGAGAAACTGCTAGATGGCAGGAAGGTTGCTGTGATGTAG