Gchil2612.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2612.t1
Unique Name	Gchil2612.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	664

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1819277..1821268 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	69319.XP_008547525.1
Preferred name	ACTR8
PFAMs	Actin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11673
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016579,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0031011,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033202,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097346,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Evalue	2.84e-18
EggNOG OGs	COG5277@1\|root,KOG0797@2759\|Eukaryota,38E28@33154\|Opisthokonta,3BD6J@33208\|Metazoa,3CVQ1@33213\|Bilateria,41X7G@6656\|Arthropoda,3SI6F@50557\|Insecta,46F5Y@7399\|Hymenoptera
Description	Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize
COG category	Z
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2612	Gchil2612	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1819277..1821268 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2612.t1.stop1	Gchil2612.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1819277..1819279 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2612.t1.CDS1	Gchil2612.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1819277..1821268 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2612.t1.exon1	Gchil2612.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1819277..1821268 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2612.t1.start1	Gchil2612.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1821266..1821268 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2612.t1	Gchil2612.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1819277..1821268 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1819277..1821268-
coding sequence from alignment at tig00004400_pilon:1819277..1821268-

mRNA sequence

>Gchil2612.t1 ID=Gchil2612.t1|Name=Gchil2612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=664bp
MGNENDIGPTASMNGDADAQSSITNGIPQLRDQHLRLRPDTRLQKPKPED
VIVLSFGSSAIRYGFASDSTPRIVFPAVAFLRSDESVADPTREPFRVPLH
NSRSDEDLKAARAIFDEVQEAVAKELALSERRRGGGRPIPWKAAIEVVPE
AGKQTRLKRDRTEVLVGHEVEMLLRDQERAKNYDIIMPMWDGKLLFDCGA
PASLIRKSLDVLISHMVAQLASDRRNPRRKGSKLRMKAAANGDSKTSKSD
VEHDFLFVNDGYAKSFVALVVPETAQRRDVAELVDAVFSSKAMQTAAIFI
HQSAVSCAFGAGLATCAVVDIGHSATTVACVEDGVICGESRIHLEYGSWH
IQNAFEVLLRDYSNLHTVLENTNTRDGSQRSQADVAEDFSTVICKTTEQL
GGFNVDENDNMNVAVVKTPSGISLRVKLGVGIRTLPCYGLIYPKLLKAAN
EMMTPKKHIKMRTIYDRNSEDDNFVSDIFNDLRRSGIATAALPIGLFANE
TGQPAAFTINPNESSIVDAIIWSVARAVEIKRPDQQSRTADTYRRYLNAV
VLAGGGASIDGIALALEGRIKKGFQDAGVTIHDVSVIDGGKGKTDEELAA
AAAILKDIDSEGGLIDDTDTATLPWKGGAVMVEADAIGEYWVHKDDWEAR
NVRALRERAPFYW*

spliced messenger RNA

>Gchil2612.t1 ID=Gchil2612.t1|Name=Gchil2612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00004400_pilon:1819277..1821268- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAATGAAAACGACATCGGCCCAACAGCGAGTATGAATGGCGACGC
AGATGCTCAGAGTTCGATTACAAATGGGATTCCTCAGCTGCGTGACCAGC
ACCTCAGATTACGACCAGATACTCGGTTGCAGAAACCAAAGCCAGAAGAC
GTCATTGTTCTTTCTTTCGGATCGTCTGCCATTCGATATGGGTTTGCATC
TGATTCAACTCCAAGAATTGTTTTTCCGGCTGTAGCTTTTCTGCGGAGCG
ACGAATCTGTTGCGGATCCTACGCGAGAACCCTTTCGCGTTCCTCTACAC
AATTCGCGCTCTGACGAAGACCTGAAGGCTGCACGCGCCATTTTTGATGA
GGTCCAGGAAGCAGTTGCGAAAGAGCTTGCTCTGAGCGAACGGCGTCGGG
GAGGGGGTCGCCCTATACCGTGGAAGGCTGCCATAGAAGTTGTACCTGAG
GCAGGAAAACAAACGAGATTGAAGCGAGACAGGACTGAGGTATTGGTTGG
CCATGAGGTTGAAATGCTGCTTCGTGATCAAGAGAGAGCAAAGAACTACG
ATATCATAATGCCAATGTGGGATGGAAAACTCTTGTTCGATTGTGGAGCC
CCTGCAAGTTTGATAAGAAAATCTCTCGATGTTCTTATATCCCATATGGT
CGCCCAATTAGCGTCTGACAGAAGAAATCCGAGGAGGAAGGGATCGAAAC
TACGTATGAAAGCAGCAGCGAATGGAGATTCAAAGACGTCTAAATCGGAT
GTCGAGCATGATTTTCTTTTCGTTAATGATGGGTACGCAAAGTCATTCGT
TGCTCTTGTTGTTCCGGAAACCGCACAGCGGAGAGATGTAGCCGAGCTTG
TTGATGCGGTTTTTTCATCGAAGGCCATGCAAACGGCGGCCATCTTCATT
CACCAAAGTGCAGTCTCTTGTGCCTTTGGAGCGGGACTTGCTACGTGTGC
TGTCGTTGATATTGGACATTCCGCGACTACTGTCGCCTGTGTCGAAGATG
GTGTGATATGCGGGGAATCCCGAATTCATCTTGAATACGGATCATGGCAC
ATTCAAAATGCTTTTGAAGTTCTGTTACGAGATTATTCAAATCTGCATAC
AGTTCTTGAAAACACAAACACGCGAGACGGAAGTCAAAGGTCACAGGCAG
ATGTTGCGGAAGACTTTTCTACAGTTATTTGCAAAACTACGGAACAACTT
GGGGGATTCAATGTGGATGAGAACGACAACATGAACGTGGCAGTTGTGAA
GACACCGAGTGGTATATCGCTACGAGTAAAGCTTGGGGTCGGTATTCGAA
CGCTCCCTTGTTACGGATTGATATATCCGAAGCTGCTGAAAGCAGCGAAC
GAAATGATGACTCCAAAGAAGCATATCAAAATGCGGACTATATATGATCG
CAATTCGGAGGACGACAATTTTGTCAGCGACATATTCAACGACTTGCGAA
GATCAGGTATCGCTACGGCGGCCCTCCCAATAGGACTTTTTGCAAACGAA
ACTGGTCAACCAGCGGCATTCACAATCAATCCAAATGAGTCTTCTATCGT
GGACGCCATAATCTGGTCTGTCGCTAGAGCTGTTGAGATCAAGAGACCAG
ACCAGCAATCTAGAACTGCAGACACATACAGAAGGTATTTGAACGCAGTC
GTTCTCGCCGGAGGTGGTGCTTCTATTGATGGTATTGCGTTGGCCTTGGA
AGGTCGCATCAAAAAGGGGTTCCAAGATGCAGGTGTAACCATTCATGATG
TTTCAGTCATTGATGGAGGAAAGGGTAAAACTGATGAAGAGCTAGCCGCA
GCTGCCGCGATTCTAAAGGACATTGATTCTGAAGGAGGTCTTATTGATGA
TACGGACACAGCTACCTTGCCATGGAAGGGAGGGGCGGTGATGGTTGAAG
CAGATGCCATCGGAGAGTATTGGGTCCACAAAGACGACTGGGAAGCAAGA
AATGTACGGGCGCTGCGGGAACGTGCTCCCTTTTATTGGTAA

protein sequence of Gchil2612.t1

>Gchil2612.t1 ID=Gchil2612.t1|Name=Gchil2612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=664bp
MGNENDIGPTASMNGDADAQSSITNGIPQLRDQHLRLRPDTRLQKPKPED
VIVLSFGSSAIRYGFASDSTPRIVFPAVAFLRSDESVADPTREPFRVPLH
NSRSDEDLKAARAIFDEVQEAVAKELALSERRRGGGRPIPWKAAIEVVPE
AGKQTRLKRDRTEVLVGHEVEMLLRDQERAKNYDIIMPMWDGKLLFDCGA
PASLIRKSLDVLISHMVAQLASDRRNPRRKGSKLRMKAAANGDSKTSKSD
VEHDFLFVNDGYAKSFVALVVPETAQRRDVAELVDAVFSSKAMQTAAIFI
HQSAVSCAFGAGLATCAVVDIGHSATTVACVEDGVICGESRIHLEYGSWH
IQNAFEVLLRDYSNLHTVLENTNTRDGSQRSQADVAEDFSTVICKTTEQL
GGFNVDENDNMNVAVVKTPSGISLRVKLGVGIRTLPCYGLIYPKLLKAAN
EMMTPKKHIKMRTIYDRNSEDDNFVSDIFNDLRRSGIATAALPIGLFANE
TGQPAAFTINPNESSIVDAIIWSVARAVEIKRPDQQSRTADTYRRYLNAV
VLAGGGASIDGIALALEGRIKKGFQDAGVTIHDVSVIDGGKGKTDEELAA
AAAILKDIDSEGGLIDDTDTATLPWKGGAVMVEADAIGEYWVHKDDWEAR
NVRALRERAPFYW*

mRNA from alignment at tig00004400_pilon:1819277..1821268-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2612.t1 ID=Gchil2612.t1|Name=Gchil2612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00004400_pilon:1819277..1821268- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAATGAAAACGACATCGGCCCAACAGCGAGTATGAATGGCGACGC
AGATGCTCAGAGTTCGATTACAAATGGGATTCCTCAGCTGCGTGACCAGC
ACCTCAGATTACGACCAGATACTCGGTTGCAGAAACCAAAGCCAGAAGAC
GTCATTGTTCTTTCTTTCGGATCGTCTGCCATTCGATATGGGTTTGCATC
TGATTCAACTCCAAGAATTGTTTTTCCGGCTGTAGCTTTTCTGCGGAGCG
ACGAATCTGTTGCGGATCCTACGCGAGAACCCTTTCGCGTTCCTCTACAC
AATTCGCGCTCTGACGAAGACCTGAAGGCTGCACGCGCCATTTTTGATGA
GGTCCAGGAAGCAGTTGCGAAAGAGCTTGCTCTGAGCGAACGGCGTCGGG
GAGGGGGTCGCCCTATACCGTGGAAGGCTGCCATAGAAGTTGTACCTGAG
GCAGGAAAACAAACGAGATTGAAGCGAGACAGGACTGAGGTATTGGTTGG
CCATGAGGTTGAAATGCTGCTTCGTGATCAAGAGAGAGCAAAGAACTACG
ATATCATAATGCCAATGTGGGATGGAAAACTCTTGTTCGATTGTGGAGCC
CCTGCAAGTTTGATAAGAAAATCTCTCGATGTTCTTATATCCCATATGGT
CGCCCAATTAGCGTCTGACAGAAGAAATCCGAGGAGGAAGGGATCGAAAC
TACGTATGAAAGCAGCAGCGAATGGAGATTCAAAGACGTCTAAATCGGAT
GTCGAGCATGATTTTCTTTTCGTTAATGATGGGTACGCAAAGTCATTCGT
TGCTCTTGTTGTTCCGGAAACCGCACAGCGGAGAGATGTAGCCGAGCTTG
TTGATGCGGTTTTTTCATCGAAGGCCATGCAAACGGCGGCCATCTTCATT
CACCAAAGTGCAGTCTCTTGTGCCTTTGGAGCGGGACTTGCTACGTGTGC
TGTCGTTGATATTGGACATTCCGCGACTACTGTCGCCTGTGTCGAAGATG
GTGTGATATGCGGGGAATCCCGAATTCATCTTGAATACGGATCATGGCAC
ATTCAAAATGCTTTTGAAGTTCTGTTACGAGATTATTCAAATCTGCATAC
AGTTCTTGAAAACACAAACACGCGAGACGGAAGTCAAAGGTCACAGGCAG
ATGTTGCGGAAGACTTTTCTACAGTTATTTGCAAAACTACGGAACAACTT
GGGGGATTCAATGTGGATGAGAACGACAACATGAACGTGGCAGTTGTGAA
GACACCGAGTGGTATATCGCTACGAGTAAAGCTTGGGGTCGGTATTCGAA
CGCTCCCTTGTTACGGATTGATATATCCGAAGCTGCTGAAAGCAGCGAAC
GAAATGATGACTCCAAAGAAGCATATCAAAATGCGGACTATATATGATCG
CAATTCGGAGGACGACAATTTTGTCAGCGACATATTCAACGACTTGCGAA
GATCAGGTATCGCTACGGCGGCCCTCCCAATAGGACTTTTTGCAAACGAA
ACTGGTCAACCAGCGGCATTCACAATCAATCCAAATGAGTCTTCTATCGT
GGACGCCATAATCTGGTCTGTCGCTAGAGCTGTTGAGATCAAGAGACCAG
ACCAGCAATCTAGAACTGCAGACACATACAGAAGGTATTTGAACGCAGTC
GTTCTCGCCGGAGGTGGTGCTTCTATTGATGGTATTGCGTTGGCCTTGGA
AGGTCGCATCAAAAAGGGGTTCCAAGATGCAGGTGTAACCATTCATGATG
TTTCAGTCATTGATGGAGGAAAGGGTAAAACTGATGAAGAGCTAGCCGCA
GCTGCCGCGATTCTAAAGGACATTGATTCTGAAGGAGGTCTTATTGATGA
TACGGACACAGCTACCTTGCCATGGAAGGGAGGGGCGGTGATGGTTGAAG
CAGATGCCATCGGAGAGTATTGGGTCCACAAAGACGACTGGGAAGCAAGA
AATGTACGGGCGCTGCGGGAACGTGCTCCCTTTTATTGGTAA

Coding sequence (CDS) from alignment at tig00004400_pilon:1819277..1821268-

>Gchil2612.t1 ID=Gchil2612.t1|Name=Gchil2612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1992bp|location=Sequence derived from alignment at tig00004400_pilon:1819277..1821268- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAATGAAAACGACATCGGCCCAACAGCGAGTATGAATGGCGACGC
AGATGCTCAGAGTTCGATTACAAATGGGATTCCTCAGCTGCGTGACCAGC
ACCTCAGATTACGACCAGATACTCGGTTGCAGAAACCAAAGCCAGAAGAC
GTCATTGTTCTTTCTTTCGGATCGTCTGCCATTCGATATGGGTTTGCATC
TGATTCAACTCCAAGAATTGTTTTTCCGGCTGTAGCTTTTCTGCGGAGCG
ACGAATCTGTTGCGGATCCTACGCGAGAACCCTTTCGCGTTCCTCTACAC
AATTCGCGCTCTGACGAAGACCTGAAGGCTGCACGCGCCATTTTTGATGA
GGTCCAGGAAGCAGTTGCGAAAGAGCTTGCTCTGAGCGAACGGCGTCGGG
GAGGGGGTCGCCCTATACCGTGGAAGGCTGCCATAGAAGTTGTACCTGAG
GCAGGAAAACAAACGAGATTGAAGCGAGACAGGACTGAGGTATTGGTTGG
CCATGAGGTTGAAATGCTGCTTCGTGATCAAGAGAGAGCAAAGAACTACG
ATATCATAATGCCAATGTGGGATGGAAAACTCTTGTTCGATTGTGGAGCC
CCTGCAAGTTTGATAAGAAAATCTCTCGATGTTCTTATATCCCATATGGT
CGCCCAATTAGCGTCTGACAGAAGAAATCCGAGGAGGAAGGGATCGAAAC
TACGTATGAAAGCAGCAGCGAATGGAGATTCAAAGACGTCTAAATCGGAT
GTCGAGCATGATTTTCTTTTCGTTAATGATGGGTACGCAAAGTCATTCGT
TGCTCTTGTTGTTCCGGAAACCGCACAGCGGAGAGATGTAGCCGAGCTTG
TTGATGCGGTTTTTTCATCGAAGGCCATGCAAACGGCGGCCATCTTCATT
CACCAAAGTGCAGTCTCTTGTGCCTTTGGAGCGGGACTTGCTACGTGTGC
TGTCGTTGATATTGGACATTCCGCGACTACTGTCGCCTGTGTCGAAGATG
GTGTGATATGCGGGGAATCCCGAATTCATCTTGAATACGGATCATGGCAC
ATTCAAAATGCTTTTGAAGTTCTGTTACGAGATTATTCAAATCTGCATAC
AGTTCTTGAAAACACAAACACGCGAGACGGAAGTCAAAGGTCACAGGCAG
ATGTTGCGGAAGACTTTTCTACAGTTATTTGCAAAACTACGGAACAACTT
GGGGGATTCAATGTGGATGAGAACGACAACATGAACGTGGCAGTTGTGAA
GACACCGAGTGGTATATCGCTACGAGTAAAGCTTGGGGTCGGTATTCGAA
CGCTCCCTTGTTACGGATTGATATATCCGAAGCTGCTGAAAGCAGCGAAC
GAAATGATGACTCCAAAGAAGCATATCAAAATGCGGACTATATATGATCG
CAATTCGGAGGACGACAATTTTGTCAGCGACATATTCAACGACTTGCGAA
GATCAGGTATCGCTACGGCGGCCCTCCCAATAGGACTTTTTGCAAACGAA
ACTGGTCAACCAGCGGCATTCACAATCAATCCAAATGAGTCTTCTATCGT
GGACGCCATAATCTGGTCTGTCGCTAGAGCTGTTGAGATCAAGAGACCAG
ACCAGCAATCTAGAACTGCAGACACATACAGAAGGTATTTGAACGCAGTC
GTTCTCGCCGGAGGTGGTGCTTCTATTGATGGTATTGCGTTGGCCTTGGA
AGGTCGCATCAAAAAGGGGTTCCAAGATGCAGGTGTAACCATTCATGATG
TTTCAGTCATTGATGGAGGAAAGGGTAAAACTGATGAAGAGCTAGCCGCA
GCTGCCGCGATTCTAAAGGACATTGATTCTGAAGGAGGTCTTATTGATGA
TACGGACACAGCTACCTTGCCATGGAAGGGAGGGGCGGTGATGGTTGAAG
CAGATGCCATCGGAGAGTATTGGGTCCACAAAGACGACTGGGAAGCAAGA
AATGTACGGGCGCTGCGGGAACGTGCTCCCTTTTATTGGTAA