Gchil2610.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2610.t1
Unique NameGchil2610.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1814672..1816210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1079460.ATTQ01000002_gene5098
Preferred nameMA20_24380
PFAMs3Beta_HSD,Epimerase,NAD_binding_10,RmlD_sub_bind
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00061
KEGG koko:K00329,ko:K00356
KEGG ReactionR11945
KEGG Pathwayko00190,map00190
Evalue1.11e-75
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,2TQMD@28211|Alphaproteobacteria,4B7PC@82115|Rhizobiaceae
EC1.6.5.3,1.6.99.3
DescriptionNmrA-like family
COG categoryGM
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2610Gchil2610Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1814672..1816210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2610.t1Gchil2610.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1814672..1816210 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2610.t1.stop1Gchil2610.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1814672..1814674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2610.t1.CDS1Gchil2610.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1814672..1815706 -
Gchil2610.t1.CDS2Gchil2610.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1815796..1815920 -
Gchil2610.t1.CDS3Gchil2610.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1816021..1816210 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2610.t1.exon1Gchil2610.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1814672..1815706 -
Gchil2610.t1.exon2Gchil2610.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1815796..1815920 -
Gchil2610.t1.exon3Gchil2610.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1816021..1816210 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2610.t1.intron1Gchil2610.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1815707..1815795 -
Gchil2610.t1.intron2Gchil2610.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1815921..1816020 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2610.t1.start1Gchil2610.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1816208..1816210 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2610.t1 ID=Gchil2610.t1|Name=Gchil2610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp
MQLFLQKKGTYTLYLADAPTFVLQYIHQNENSGTRIKADALRTISLEYGF
SDCPTQQFPHLDRWKTANGKRCCNSENDIAGVIGLMFCSGSNTADQSWPK
LGPYLVRSVGRHLTLWQPRSAVNMANASKTLTVFGASGFIGRQLIRSLSR
EPYANKLTLRVAARSAAVQSPSTWKRMGPAIGNIQPFPCDITNPHQVERA
IEGATDVINCVGILYETPSRNITFARIQEEAPRVIAEAIKNSPTVKNMVH
VSAIGADVNSTSAYARTKAKGELASLSLSKDFARVTILRPSIVFGPEDSF
FNRFENMSRYLPFLPLVGGGKTKYQPVHVEDVAAAIIKALAIDSEMKTTS
GIYEVGGKTVLTFEQLMQMMLEVTGRKRLLLPIPFAVASMQGAFFESIHS
RVPSLAPLLTRDQVELLKSDNIVSPSAKTLYDLGIEPKGCSAHTIQYIG*
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spliced messenger RNA

>Gchil2610.t1 ID=Gchil2610.t1|Name=Gchil2610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00004400_pilon:1814672..1816210- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTCTTTCTTCAGAAAAAAGGAACCTATACTTTGTACCTCGCAGA
CGCGCCCACCTTTGTTCTGCAATATATTCACCAGAACGAGAACTCTGGAA
CCAGAATAAAAGCTGATGCACTCCGGACGATATCGTTAGAGTACGGCTTT
TCCGACTGCCCGACGCAGCAGTTCCCGCACCTCGATCGGTGGAAAACTGC
AAATGGAAAACGTTGCTGTAACAGTGAGAATGACATTGCTGGGGTTATTG
GCCTCATGTTCTGTTCTGGATCAAACACAGCTGACCAAAGCTGGCCAAAG
CTGGGGCCGTATTTGGTGCGAAGCGTTGGTCGTCATCTGACCCTCTGGCA
ACCGAGATCCGCAGTGAACATGGCCAATGCATCGAAAACGCTTACGGTGT
TTGGAGCCTCTGGTTTCATAGGACGCCAACTCATTCGCAGCCTTTCACGG
GAACCGTACGCGAACAAGCTCACACTGCGTGTGGCAGCGCGATCGGCGGC
CGTCCAGAGCCCCTCGACATGGAAACGTATGGGTCCCGCGATCGGCAATA
TCCAACCTTTTCCCTGTGATATTACAAACCCACATCAGGTTGAACGTGCC
ATCGAGGGCGCGACAGATGTCATCAACTGCGTGGGTATTTTGTACGAAAC
ACCTTCAAGAAACATTACTTTTGCAAGAATTCAAGAAGAAGCCCCAAGAG
TGATAGCCGAAGCCATCAAAAATTCACCAACCGTAAAGAACATGGTACAC
GTATCCGCCATCGGAGCCGATGTGAATTCGACCAGCGCTTACGCACGTAC
AAAAGCAAAGGGAGAACTAGCATCCTTGAGTCTTTCAAAAGACTTTGCAA
GAGTAACTATTCTTCGTCCATCGATTGTGTTCGGACCAGAAGATTCTTTC
TTTAATCGGTTTGAAAACATGTCTCGCTATCTTCCATTTCTGCCGTTGGT
TGGGGGAGGGAAAACGAAGTATCAACCGGTTCATGTGGAAGATGTTGCCG
CTGCAATCATTAAAGCGCTAGCGATAGATTCTGAGATGAAGACGACATCC
GGTATCTATGAAGTTGGTGGCAAAACAGTACTCACGTTTGAACAGTTAAT
GCAAATGATGTTGGAGGTGACGGGGCGAAAACGATTGCTACTGCCGATCC
CATTTGCGGTTGCCTCGATGCAAGGTGCGTTTTTTGAAAGTATCCATTCG
AGAGTTCCTTCATTAGCGCCTCTTTTGACAAGAGACCAAGTTGAACTACT
CAAGAGTGATAATATTGTGTCTCCAAGCGCCAAGACGTTGTACGACCTTG
GCATCGAACCGAAAGGGTGTAGCGCACATACGATACAGTACATTGGGTGA
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protein sequence of Gchil2610.t1

>Gchil2610.t1 ID=Gchil2610.t1|Name=Gchil2610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=450bp
MQLFLQKKGTYTLYLADAPTFVLQYIHQNENSGTRIKADALRTISLEYGF
SDCPTQQFPHLDRWKTANGKRCCNSENDIAGVIGLMFCSGSNTADQSWPK
LGPYLVRSVGRHLTLWQPRSAVNMANASKTLTVFGASGFIGRQLIRSLSR
EPYANKLTLRVAARSAAVQSPSTWKRMGPAIGNIQPFPCDITNPHQVERA
IEGATDVINCVGILYETPSRNITFARIQEEAPRVIAEAIKNSPTVKNMVH
VSAIGADVNSTSAYARTKAKGELASLSLSKDFARVTILRPSIVFGPEDSF
FNRFENMSRYLPFLPLVGGGKTKYQPVHVEDVAAAIIKALAIDSEMKTTS
GIYEVGGKTVLTFEQLMQMMLEVTGRKRLLLPIPFAVASMQGAFFESIHS
RVPSLAPLLTRDQVELLKSDNIVSPSAKTLYDLGIEPKGCSAHTIQYIG*
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mRNA from alignment at tig00004400_pilon:1814672..1816210-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2610.t1 ID=Gchil2610.t1|Name=Gchil2610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00004400_pilon:1814672..1816210- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCTCTTTCTTCAGAAAAAAGGAACCTATACTTTGTACCTCGCAGA
CGCGCCCACCTTTGTTCTGCAATATATTCACCAGAACGAGAACTCTGGAA
CCAGAATAAAAGCTGATGCACTCCGGACGATATCGTTAGAGTACGGCTTT
TCCGACTGCCCGACGCAGCAGTTCCCGCACCTCGATCGGTGTATGTATCG
CCATTAGCTGGAACCCAAACTCTTATAGAAACTAAAGAGTTCAAAAAAAA
ACCCCTCGTACAGCGTAGTTCAAGGTGTAAAAAAATTAAGGGAAAACTGC
AAATGGAAAACGTTGCTGTAACAGTGAGAATGACATTGCTGGGGTTATTG
GCCTCATGTTCTGTTCTGGATCAAACACAGCTGACCAAAGCTGGCCAAAG
CTGGGGCCGTATTTGGTAAGTAATGTGCCAATAGGGATATGAGGGAAATC
TTCTTAGCCGTGAATGGAATATCCATTTCGTCTGGTTCGTATCTTTTTCA
GTAGGTGCGAAGCGTTGGTCGTCATCTGACCCTCTGGCAACCGAGATCCG
CAGTGAACATGGCCAATGCATCGAAAACGCTTACGGTGTTTGGAGCCTCT
GGTTTCATAGGACGCCAACTCATTCGCAGCCTTTCACGGGAACCGTACGC
GAACAAGCTCACACTGCGTGTGGCAGCGCGATCGGCGGCCGTCCAGAGCC
CCTCGACATGGAAACGTATGGGTCCCGCGATCGGCAATATCCAACCTTTT
CCCTGTGATATTACAAACCCACATCAGGTTGAACGTGCCATCGAGGGCGC
GACAGATGTCATCAACTGCGTGGGTATTTTGTACGAAACACCTTCAAGAA
ACATTACTTTTGCAAGAATTCAAGAAGAAGCCCCAAGAGTGATAGCCGAA
GCCATCAAAAATTCACCAACCGTAAAGAACATGGTACACGTATCCGCCAT
CGGAGCCGATGTGAATTCGACCAGCGCTTACGCACGTACAAAAGCAAAGG
GAGAACTAGCATCCTTGAGTCTTTCAAAAGACTTTGCAAGAGTAACTATT
CTTCGTCCATCGATTGTGTTCGGACCAGAAGATTCTTTCTTTAATCGGTT
TGAAAACATGTCTCGCTATCTTCCATTTCTGCCGTTGGTTGGGGGAGGGA
AAACGAAGTATCAACCGGTTCATGTGGAAGATGTTGCCGCTGCAATCATT
AAAGCGCTAGCGATAGATTCTGAGATGAAGACGACATCCGGTATCTATGA
AGTTGGTGGCAAAACAGTACTCACGTTTGAACAGTTAATGCAAATGATGT
TGGAGGTGACGGGGCGAAAACGATTGCTACTGCCGATCCCATTTGCGGTT
GCCTCGATGCAAGGTGCGTTTTTTGAAAGTATCCATTCGAGAGTTCCTTC
ATTAGCGCCTCTTTTGACAAGAGACCAAGTTGAACTACTCAAGAGTGATA
ATATTGTGTCTCCAAGCGCCAAGACGTTGTACGACCTTGGCATCGAACCG
AAAGGGTGTAGCGCACATACGATACAGTACATTGGGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1814672..1816210-

>Gchil2610.t1 ID=Gchil2610.t1|Name=Gchil2610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00004400_pilon:1814672..1816210- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCTCTTTCTTCAGAAAAAAGGAACCTATACTTTGTACCTCGCAGA
CGCGCCCACCTTTGTTCTGCAATATATTCACCAGAACGAGAACTCTGGAA
CCAGAATAAAAGCTGATGCACTCCGGACGATATCGTTAGAGTACGGCTTT
TCCGACTGCCCGACGCAGCAGTTCCCGCACCTCGATCGGTGGAAAACTGC
AAATGGAAAACGTTGCTGTAACAGTGAGAATGACATTGCTGGGGTTATTG
GCCTCATGTTCTGTTCTGGATCAAACACAGCTGACCAAAGCTGGCCAAAG
CTGGGGCCGTATTTGGTGCGAAGCGTTGGTCGTCATCTGACCCTCTGGCA
ACCGAGATCCGCAGTGAACATGGCCAATGCATCGAAAACGCTTACGGTGT
TTGGAGCCTCTGGTTTCATAGGACGCCAACTCATTCGCAGCCTTTCACGG
GAACCGTACGCGAACAAGCTCACACTGCGTGTGGCAGCGCGATCGGCGGC
CGTCCAGAGCCCCTCGACATGGAAACGTATGGGTCCCGCGATCGGCAATA
TCCAACCTTTTCCCTGTGATATTACAAACCCACATCAGGTTGAACGTGCC
ATCGAGGGCGCGACAGATGTCATCAACTGCGTGGGTATTTTGTACGAAAC
ACCTTCAAGAAACATTACTTTTGCAAGAATTCAAGAAGAAGCCCCAAGAG
TGATAGCCGAAGCCATCAAAAATTCACCAACCGTAAAGAACATGGTACAC
GTATCCGCCATCGGAGCCGATGTGAATTCGACCAGCGCTTACGCACGTAC
AAAAGCAAAGGGAGAACTAGCATCCTTGAGTCTTTCAAAAGACTTTGCAA
GAGTAACTATTCTTCGTCCATCGATTGTGTTCGGACCAGAAGATTCTTTC
TTTAATCGGTTTGAAAACATGTCTCGCTATCTTCCATTTCTGCCGTTGGT
TGGGGGAGGGAAAACGAAGTATCAACCGGTTCATGTGGAAGATGTTGCCG
CTGCAATCATTAAAGCGCTAGCGATAGATTCTGAGATGAAGACGACATCC
GGTATCTATGAAGTTGGTGGCAAAACAGTACTCACGTTTGAACAGTTAAT
GCAAATGATGTTGGAGGTGACGGGGCGAAAACGATTGCTACTGCCGATCC
CATTTGCGGTTGCCTCGATGCAAGGTGCGTTTTTTGAAAGTATCCATTCG
AGAGTTCCTTCATTAGCGCCTCTTTTGACAAGAGACCAAGTTGAACTACT
CAAGAGTGATAATATTGTGTCTCCAAGCGCCAAGACGTTGTACGACCTTG
GCATCGAACCGAAAGGGTGTAGCGCACATACGATACAGTACATTGGGTGA
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