Gchil2608.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2608.t1
Unique NameGchil2608.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length588
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1811197..1812960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2608Gchil2608Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1811197..1812960 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2608.t1.start1Gchil2608.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1811197..1811199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2608.t1.CDS1Gchil2608.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1811197..1812960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2608.t1.exon1Gchil2608.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1811197..1812960 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2608.t1.stop1Gchil2608.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1812958..1812960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2608.t1Gchil2608.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1811197..1812960 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2608.t1 ID=Gchil2608.t1|Name=Gchil2608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=588bp
MAPPPVNKLRSSIERAVRAFSFHRDPAEARPPPPPLSPLPPLPQLSPLSP
LSPPPHPPCAPAEPASAQPNVHSTRSFPSMSSIRHTSQLPRRPPRPHRHL
KFVPRRTPHSSRSPRSLRTFSLSHNVSATPSNQSNSPPHPMSSATPSQSL
ADTSSLPKPHMFRRLSAHRMRSLSLGHRASDPAQDPDNKLWSSGGPALFS
RSPTEDSTSWSRIFASSFDLREKARWRKRNFSYSCTDFELEQEHHIVEIG
QRLPDRSHSGTEEDVFGRRRRDFSISSCSLPTVPSSGLLACDVDQTVDRR
VNQSVDPRASTIRHSSLKSSSDSRRAPEQPRFLDTPIVKPDRNHKPPLMK
EATTDDFDEQEAIRHITKAIGSSKGRLRKSANMSKAFTAVIRSGDGFLRK
SELIQQTLNSEDSKDPSMIILLDPESCEPGSMRPEGASSASEESGSVENM
KSVRVAAAPNIGFSTSMTARQCAATLETILRDMACKVSRYTEEDIGKSST
VKLRATRFGGGARLLDRKVKVLVTVREEDNIRTSVSFRRVSTMYGSRDGH
FPLCSEIRERFQREWPAVVEALYIRVPHTQVVRSNDG*
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spliced messenger RNA

>Gchil2608.t1 ID=Gchil2608.t1|Name=Gchil2608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00004400_pilon:1811197..1812960+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTCCCCCTGTCAACAAGTTGCGCAGCTCCATTGAGCGCGCTGT
GCGCGCCTTCAGCTTTCATCGCGACCCTGCTGAAGCCCGTCCGCCGCCCC
CGCCGCTCTCACCGCTCCCACCGCTTCCGCAGCTCTCGCCGCTCTCGCCG
CTCTCGCCACCCCCGCACCCCCCCTGCGCACCCGCGGAGCCCGCCTCCGC
GCAACCCAATGTGCACTCCACTCGTTCCTTTCCAAGTATGTCTTCCATTC
GACACACTTCGCAACTACCGCGACGTCCGCCCCGCCCGCATCGTCACCTC
AAGTTCGTGCCGCGTCGCACCCCGCATTCGTCCCGTTCTCCCCGTTCGCT
GCGCACCTTTTCTTTGAGTCATAACGTCTCTGCAACCCCATCAAACCAAT
CGAATTCTCCACCCCACCCCATGTCTTCCGCCACGCCGTCGCAATCCTTG
GCAGATACGTCGTCGCTCCCCAAGCCGCACATGTTCCGCCGCCTTAGCGC
CCACCGAATGAGAAGTCTCTCGCTTGGCCACCGCGCCTCAGACCCCGCTC
AGGACCCGGACAACAAGCTGTGGAGCAGCGGCGGTCCCGCTTTGTTCTCC
CGATCGCCCACGGAGGACAGTACCAGCTGGAGCCGCATCTTCGCATCCTC
CTTCGACTTGAGAGAAAAGGCTCGCTGGAGGAAGAGGAACTTTTCCTATT
CCTGCACCGACTTTGAACTGGAACAAGAGCATCATATCGTTGAGATTGGC
CAGCGTTTGCCGGACCGATCGCACTCTGGCACAGAGGAAGACGTGTTCGG
CAGACGTCGTCGCGACTTTTCCATCTCTTCTTGTTCCCTGCCTACCGTGC
CATCATCCGGACTGCTTGCTTGTGACGTGGATCAGACTGTGGATCGGCGA
GTGAATCAGAGCGTGGACCCGCGTGCGTCCACCATCCGCCACTCGTCTCT
CAAGAGCAGCTCGGACAGCCGACGTGCGCCCGAACAGCCGCGCTTCCTGG
ACACGCCCATTGTGAAACCCGATCGCAACCACAAGCCGCCTCTGATGAAG
GAAGCCACCACGGATGACTTTGACGAGCAAGAAGCCATTCGACACATCAC
CAAGGCCATTGGCAGCTCGAAAGGTCGGCTGCGTAAAAGCGCCAACATGA
GCAAGGCATTCACAGCGGTGATACGCAGTGGCGACGGCTTTCTGAGAAAG
AGTGAGTTGATCCAACAGACGCTTAATAGCGAGGACAGCAAGGACCCGTC
CATGATTATTCTTCTGGACCCGGAGTCGTGTGAGCCAGGCTCCATGCGGC
CGGAGGGCGCCAGCAGTGCGTCGGAAGAAAGCGGATCGGTTGAGAACATG
AAGAGTGTGCGCGTGGCGGCCGCGCCAAACATTGGTTTTAGTACGAGCAT
GACGGCGCGTCAATGCGCGGCCACTTTGGAGACGATTTTAAGGGACATGG
CATGCAAGGTGTCTCGCTACACGGAAGAGGATATTGGGAAGAGCAGCACT
GTGAAACTGAGGGCGACGCGCTTTGGCGGTGGGGCTCGACTGTTGGATCG
AAAGGTGAAGGTGTTGGTGACAGTTCGCGAGGAGGACAACATCAGAACGT
CGGTGTCGTTCAGACGAGTTTCTACTATGTACGGGAGCCGGGACGGGCAC
TTTCCGTTGTGCAGCGAGATTCGGGAACGGTTCCAAAGGGAATGGCCCGC
GGTGGTTGAGGCGCTGTACATTCGCGTCCCTCACACGCAGGTGGTGAGAA
GCAATGATGGGTGA
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protein sequence of Gchil2608.t1

>Gchil2608.t1 ID=Gchil2608.t1|Name=Gchil2608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=588bp
MAPPPVNKLRSSIERAVRAFSFHRDPAEARPPPPPLSPLPPLPQLSPLSP
LSPPPHPPCAPAEPASAQPNVHSTRSFPSMSSIRHTSQLPRRPPRPHRHL
KFVPRRTPHSSRSPRSLRTFSLSHNVSATPSNQSNSPPHPMSSATPSQSL
ADTSSLPKPHMFRRLSAHRMRSLSLGHRASDPAQDPDNKLWSSGGPALFS
RSPTEDSTSWSRIFASSFDLREKARWRKRNFSYSCTDFELEQEHHIVEIG
QRLPDRSHSGTEEDVFGRRRRDFSISSCSLPTVPSSGLLACDVDQTVDRR
VNQSVDPRASTIRHSSLKSSSDSRRAPEQPRFLDTPIVKPDRNHKPPLMK
EATTDDFDEQEAIRHITKAIGSSKGRLRKSANMSKAFTAVIRSGDGFLRK
SELIQQTLNSEDSKDPSMIILLDPESCEPGSMRPEGASSASEESGSVENM
KSVRVAAAPNIGFSTSMTARQCAATLETILRDMACKVSRYTEEDIGKSST
VKLRATRFGGGARLLDRKVKVLVTVREEDNIRTSVSFRRVSTMYGSRDGH
FPLCSEIRERFQREWPAVVEALYIRVPHTQVVRSNDG*
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mRNA from alignment at tig00004400_pilon:1811197..1812960+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2608.t1 ID=Gchil2608.t1|Name=Gchil2608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00004400_pilon:1811197..1812960+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCTCCCCCTGTCAACAAGTTGCGCAGCTCCATTGAGCGCGCTGT
GCGCGCCTTCAGCTTTCATCGCGACCCTGCTGAAGCCCGTCCGCCGCCCC
CGCCGCTCTCACCGCTCCCACCGCTTCCGCAGCTCTCGCCGCTCTCGCCG
CTCTCGCCACCCCCGCACCCCCCCTGCGCACCCGCGGAGCCCGCCTCCGC
GCAACCCAATGTGCACTCCACTCGTTCCTTTCCAAGTATGTCTTCCATTC
GACACACTTCGCAACTACCGCGACGTCCGCCCCGCCCGCATCGTCACCTC
AAGTTCGTGCCGCGTCGCACCCCGCATTCGTCCCGTTCTCCCCGTTCGCT
GCGCACCTTTTCTTTGAGTCATAACGTCTCTGCAACCCCATCAAACCAAT
CGAATTCTCCACCCCACCCCATGTCTTCCGCCACGCCGTCGCAATCCTTG
GCAGATACGTCGTCGCTCCCCAAGCCGCACATGTTCCGCCGCCTTAGCGC
CCACCGAATGAGAAGTCTCTCGCTTGGCCACCGCGCCTCAGACCCCGCTC
AGGACCCGGACAACAAGCTGTGGAGCAGCGGCGGTCCCGCTTTGTTCTCC
CGATCGCCCACGGAGGACAGTACCAGCTGGAGCCGCATCTTCGCATCCTC
CTTCGACTTGAGAGAAAAGGCTCGCTGGAGGAAGAGGAACTTTTCCTATT
CCTGCACCGACTTTGAACTGGAACAAGAGCATCATATCGTTGAGATTGGC
CAGCGTTTGCCGGACCGATCGCACTCTGGCACAGAGGAAGACGTGTTCGG
CAGACGTCGTCGCGACTTTTCCATCTCTTCTTGTTCCCTGCCTACCGTGC
CATCATCCGGACTGCTTGCTTGTGACGTGGATCAGACTGTGGATCGGCGA
GTGAATCAGAGCGTGGACCCGCGTGCGTCCACCATCCGCCACTCGTCTCT
CAAGAGCAGCTCGGACAGCCGACGTGCGCCCGAACAGCCGCGCTTCCTGG
ACACGCCCATTGTGAAACCCGATCGCAACCACAAGCCGCCTCTGATGAAG
GAAGCCACCACGGATGACTTTGACGAGCAAGAAGCCATTCGACACATCAC
CAAGGCCATTGGCAGCTCGAAAGGTCGGCTGCGTAAAAGCGCCAACATGA
GCAAGGCATTCACAGCGGTGATACGCAGTGGCGACGGCTTTCTGAGAAAG
AGTGAGTTGATCCAACAGACGCTTAATAGCGAGGACAGCAAGGACCCGTC
CATGATTATTCTTCTGGACCCGGAGTCGTGTGAGCCAGGCTCCATGCGGC
CGGAGGGCGCCAGCAGTGCGTCGGAAGAAAGCGGATCGGTTGAGAACATG
AAGAGTGTGCGCGTGGCGGCCGCGCCAAACATTGGTTTTAGTACGAGCAT
GACGGCGCGTCAATGCGCGGCCACTTTGGAGACGATTTTAAGGGACATGG
CATGCAAGGTGTCTCGCTACACGGAAGAGGATATTGGGAAGAGCAGCACT
GTGAAACTGAGGGCGACGCGCTTTGGCGGTGGGGCTCGACTGTTGGATCG
AAAGGTGAAGGTGTTGGTGACAGTTCGCGAGGAGGACAACATCAGAACGT
CGGTGTCGTTCAGACGAGTTTCTACTATGTACGGGAGCCGGGACGGGCAC
TTTCCGTTGTGCAGCGAGATTCGGGAACGGTTCCAAAGGGAATGGCCCGC
GGTGGTTGAGGCGCTGTACATTCGCGTCCCTCACACGCAGGTGGTGAGAA
GCAATGATGGGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1811197..1812960+

>Gchil2608.t1 ID=Gchil2608.t1|Name=Gchil2608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1764bp|location=Sequence derived from alignment at tig00004400_pilon:1811197..1812960+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCTCCCCCTGTCAACAAGTTGCGCAGCTCCATTGAGCGCGCTGT
GCGCGCCTTCAGCTTTCATCGCGACCCTGCTGAAGCCCGTCCGCCGCCCC
CGCCGCTCTCACCGCTCCCACCGCTTCCGCAGCTCTCGCCGCTCTCGCCG
CTCTCGCCACCCCCGCACCCCCCCTGCGCACCCGCGGAGCCCGCCTCCGC
GCAACCCAATGTGCACTCCACTCGTTCCTTTCCAAGTATGTCTTCCATTC
GACACACTTCGCAACTACCGCGACGTCCGCCCCGCCCGCATCGTCACCTC
AAGTTCGTGCCGCGTCGCACCCCGCATTCGTCCCGTTCTCCCCGTTCGCT
GCGCACCTTTTCTTTGAGTCATAACGTCTCTGCAACCCCATCAAACCAAT
CGAATTCTCCACCCCACCCCATGTCTTCCGCCACGCCGTCGCAATCCTTG
GCAGATACGTCGTCGCTCCCCAAGCCGCACATGTTCCGCCGCCTTAGCGC
CCACCGAATGAGAAGTCTCTCGCTTGGCCACCGCGCCTCAGACCCCGCTC
AGGACCCGGACAACAAGCTGTGGAGCAGCGGCGGTCCCGCTTTGTTCTCC
CGATCGCCCACGGAGGACAGTACCAGCTGGAGCCGCATCTTCGCATCCTC
CTTCGACTTGAGAGAAAAGGCTCGCTGGAGGAAGAGGAACTTTTCCTATT
CCTGCACCGACTTTGAACTGGAACAAGAGCATCATATCGTTGAGATTGGC
CAGCGTTTGCCGGACCGATCGCACTCTGGCACAGAGGAAGACGTGTTCGG
CAGACGTCGTCGCGACTTTTCCATCTCTTCTTGTTCCCTGCCTACCGTGC
CATCATCCGGACTGCTTGCTTGTGACGTGGATCAGACTGTGGATCGGCGA
GTGAATCAGAGCGTGGACCCGCGTGCGTCCACCATCCGCCACTCGTCTCT
CAAGAGCAGCTCGGACAGCCGACGTGCGCCCGAACAGCCGCGCTTCCTGG
ACACGCCCATTGTGAAACCCGATCGCAACCACAAGCCGCCTCTGATGAAG
GAAGCCACCACGGATGACTTTGACGAGCAAGAAGCCATTCGACACATCAC
CAAGGCCATTGGCAGCTCGAAAGGTCGGCTGCGTAAAAGCGCCAACATGA
GCAAGGCATTCACAGCGGTGATACGCAGTGGCGACGGCTTTCTGAGAAAG
AGTGAGTTGATCCAACAGACGCTTAATAGCGAGGACAGCAAGGACCCGTC
CATGATTATTCTTCTGGACCCGGAGTCGTGTGAGCCAGGCTCCATGCGGC
CGGAGGGCGCCAGCAGTGCGTCGGAAGAAAGCGGATCGGTTGAGAACATG
AAGAGTGTGCGCGTGGCGGCCGCGCCAAACATTGGTTTTAGTACGAGCAT
GACGGCGCGTCAATGCGCGGCCACTTTGGAGACGATTTTAAGGGACATGG
CATGCAAGGTGTCTCGCTACACGGAAGAGGATATTGGGAAGAGCAGCACT
GTGAAACTGAGGGCGACGCGCTTTGGCGGTGGGGCTCGACTGTTGGATCG
AAAGGTGAAGGTGTTGGTGACAGTTCGCGAGGAGGACAACATCAGAACGT
CGGTGTCGTTCAGACGAGTTTCTACTATGTACGGGAGCCGGGACGGGCAC
TTTCCGTTGTGCAGCGAGATTCGGGAACGGTTCCAAAGGGAATGGCCCGC
GGTGGTTGAGGCGCTGTACATTCGCGTCCCTCACACGCAGGTGGTGAGAA
GCAATGATGGGTGA
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