Gchil2605.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2605.t1
Unique NameGchil2605.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1792108..1793460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008221805.1
PFAMsWD40
Max annot lvl35493|Streptophyta
KEGG koko:K12816
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0071007,GO:0071013,GO:1902494,GO:1990904
Evalue8.31e-109
EggNOG OGsKOG0282@1|root,KOG0282@2759|Eukaryota,37IZX@33090|Viridiplantae,3G7NG@35493|Streptophyta,4JF7Q@91835|fabids
Descriptionpre-mRNA-processing factor
COG categoryS
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2605Gchil2605Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1792108..1793460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2605.t1.stop1Gchil2605.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1792108..1792110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2605.t1.CDS1Gchil2605.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1792108..1793460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2605.t1.exon1Gchil2605.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1792108..1793460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2605.t1.start1Gchil2605.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1793458..1793460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2605.t1Gchil2605.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1792108..1793460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2605.t1 ID=Gchil2605.t1|Name=Gchil2605.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=451bp
MDMLTAYSHNSSDAESTTHTPPASPESTKRAVPTGTIETIPFDERQFSSL
ERSFKLSTNTTTALKKRPRSPLPNISAQSKQAESQNTKTSKKHRPSSLQP
TRASAPSVLVPKSEFHLSSVNDYQNRAWNAPPSTSRTFADLEQYTPYIPK
RAVACEVAHPRGASVVHFSPGHGHLVLSAGNDASAKVWLSASKKLARTYI
GHSKAIRDAVFDHSGSQFLTAAFDKSVLLWDIESGKVLSSFKTEGTPLCV
RFCPLDPSQFLVGCADKKVLQIDVRDASNIVQTYDEHMGRVNSISFIDSG
RRFVTSADDKVIRIWEYGVPVVIKYISDPSSHSMPVTIVHPNQKWLACQS
MDNTIRLFSTSGRFKRNDKRVFRGHLVAGYACGMSTSPDGRYLVSGDSLG
RMFYWDWKTGSLFRAVDAHKKPCCSSVDWHPTQSSFVVSCGWDGNIMFWD
*
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spliced messenger RNA

>Gchil2605.t1 ID=Gchil2605.t1|Name=Gchil2605.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00004400_pilon:1792108..1793460- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATGCTTACCGCCTATTCACACAACTCGTCCGATGCAGAGAGCAC
GACGCATACGCCACCAGCCTCGCCCGAGTCTACCAAACGCGCCGTCCCTA
CCGGAACAATAGAGACAATTCCGTTTGACGAACGCCAATTCTCCTCTCTT
GAACGCTCCTTCAAGCTGTCCACAAATACAACCACAGCCCTTAAGAAGAG
ACCCAGATCCCCTCTCCCGAACATTTCCGCGCAGTCCAAGCAAGCGGAAA
GTCAAAACACAAAAACATCAAAGAAACATCGTCCTTCCTCGCTGCAGCCA
ACTCGCGCGTCTGCACCTTCTGTTCTGGTTCCCAAGTCCGAATTTCATTT
ATCGTCCGTGAATGACTATCAAAATCGCGCATGGAATGCTCCGCCTTCAA
CAAGTCGAACGTTCGCTGATTTGGAGCAGTATACACCGTACATACCGAAG
CGCGCCGTGGCTTGCGAAGTCGCCCATCCGCGAGGTGCTTCTGTCGTTCA
TTTCAGTCCTGGTCATGGTCATCTCGTTCTATCAGCCGGAAATGATGCCA
GTGCAAAAGTTTGGCTATCCGCTTCTAAAAAGCTCGCAAGGACTTACATA
GGCCATTCAAAAGCTATCCGAGACGCGGTTTTCGATCATTCTGGTTCTCA
GTTTCTCACCGCTGCGTTTGACAAGAGTGTTCTTCTGTGGGATATTGAAT
CAGGAAAAGTTTTATCGTCCTTCAAAACGGAAGGTACTCCGCTTTGCGTT
CGCTTCTGTCCTCTTGATCCGTCTCAGTTTCTGGTGGGTTGCGCCGATAA
GAAAGTTTTGCAGATTGATGTCCGAGATGCATCAAACATTGTCCAGACCT
ATGACGAGCACATGGGACGTGTCAATTCTATATCTTTCATTGATTCAGGT
CGTCGATTTGTGACGAGCGCTGATGATAAGGTTATCAGAATTTGGGAATA
TGGCGTTCCAGTGGTTATCAAGTACATATCAGATCCATCTTCTCATAGTA
TGCCGGTTACTATAGTTCATCCAAATCAGAAATGGTTGGCTTGTCAAAGC
ATGGATAACACCATTCGGCTCTTTTCTACCAGTGGAAGGTTCAAGCGTAA
CGACAAGAGAGTATTTCGCGGTCATCTTGTCGCTGGCTACGCATGCGGCA
TGAGCACGTCGCCAGATGGAAGATATCTTGTTAGTGGCGATAGTCTTGGA
AGAATGTTTTACTGGGATTGGAAGACCGGCAGTTTGTTTCGAGCAGTAGA
CGCACACAAAAAGCCCTGTTGCAGCTCGGTTGATTGGCATCCAACTCAAT
CCTCATTCGTTGTATCTTGCGGTTGGGATGGTAATATCATGTTCTGGGAC
TAA
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protein sequence of Gchil2605.t1

>Gchil2605.t1 ID=Gchil2605.t1|Name=Gchil2605.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=451bp
MDMLTAYSHNSSDAESTTHTPPASPESTKRAVPTGTIETIPFDERQFSSL
ERSFKLSTNTTTALKKRPRSPLPNISAQSKQAESQNTKTSKKHRPSSLQP
TRASAPSVLVPKSEFHLSSVNDYQNRAWNAPPSTSRTFADLEQYTPYIPK
RAVACEVAHPRGASVVHFSPGHGHLVLSAGNDASAKVWLSASKKLARTYI
GHSKAIRDAVFDHSGSQFLTAAFDKSVLLWDIESGKVLSSFKTEGTPLCV
RFCPLDPSQFLVGCADKKVLQIDVRDASNIVQTYDEHMGRVNSISFIDSG
RRFVTSADDKVIRIWEYGVPVVIKYISDPSSHSMPVTIVHPNQKWLACQS
MDNTIRLFSTSGRFKRNDKRVFRGHLVAGYACGMSTSPDGRYLVSGDSLG
RMFYWDWKTGSLFRAVDAHKKPCCSSVDWHPTQSSFVVSCGWDGNIMFWD
*
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mRNA from alignment at tig00004400_pilon:1792108..1793460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2605.t1 ID=Gchil2605.t1|Name=Gchil2605.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00004400_pilon:1792108..1793460- (Gracilaria chilensis NLEC103_M9 male)
ATGGATATGCTTACCGCCTATTCACACAACTCGTCCGATGCAGAGAGCAC
GACGCATACGCCACCAGCCTCGCCCGAGTCTACCAAACGCGCCGTCCCTA
CCGGAACAATAGAGACAATTCCGTTTGACGAACGCCAATTCTCCTCTCTT
GAACGCTCCTTCAAGCTGTCCACAAATACAACCACAGCCCTTAAGAAGAG
ACCCAGATCCCCTCTCCCGAACATTTCCGCGCAGTCCAAGCAAGCGGAAA
GTCAAAACACAAAAACATCAAAGAAACATCGTCCTTCCTCGCTGCAGCCA
ACTCGCGCGTCTGCACCTTCTGTTCTGGTTCCCAAGTCCGAATTTCATTT
ATCGTCCGTGAATGACTATCAAAATCGCGCATGGAATGCTCCGCCTTCAA
CAAGTCGAACGTTCGCTGATTTGGAGCAGTATACACCGTACATACCGAAG
CGCGCCGTGGCTTGCGAAGTCGCCCATCCGCGAGGTGCTTCTGTCGTTCA
TTTCAGTCCTGGTCATGGTCATCTCGTTCTATCAGCCGGAAATGATGCCA
GTGCAAAAGTTTGGCTATCCGCTTCTAAAAAGCTCGCAAGGACTTACATA
GGCCATTCAAAAGCTATCCGAGACGCGGTTTTCGATCATTCTGGTTCTCA
GTTTCTCACCGCTGCGTTTGACAAGAGTGTTCTTCTGTGGGATATTGAAT
CAGGAAAAGTTTTATCGTCCTTCAAAACGGAAGGTACTCCGCTTTGCGTT
CGCTTCTGTCCTCTTGATCCGTCTCAGTTTCTGGTGGGTTGCGCCGATAA
GAAAGTTTTGCAGATTGATGTCCGAGATGCATCAAACATTGTCCAGACCT
ATGACGAGCACATGGGACGTGTCAATTCTATATCTTTCATTGATTCAGGT
CGTCGATTTGTGACGAGCGCTGATGATAAGGTTATCAGAATTTGGGAATA
TGGCGTTCCAGTGGTTATCAAGTACATATCAGATCCATCTTCTCATAGTA
TGCCGGTTACTATAGTTCATCCAAATCAGAAATGGTTGGCTTGTCAAAGC
ATGGATAACACCATTCGGCTCTTTTCTACCAGTGGAAGGTTCAAGCGTAA
CGACAAGAGAGTATTTCGCGGTCATCTTGTCGCTGGCTACGCATGCGGCA
TGAGCACGTCGCCAGATGGAAGATATCTTGTTAGTGGCGATAGTCTTGGA
AGAATGTTTTACTGGGATTGGAAGACCGGCAGTTTGTTTCGAGCAGTAGA
CGCACACAAAAAGCCCTGTTGCAGCTCGGTTGATTGGCATCCAACTCAAT
CCTCATTCGTTGTATCTTGCGGTTGGGATGGTAATATCATGTTCTGGGAC
TAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1792108..1793460-

>Gchil2605.t1 ID=Gchil2605.t1|Name=Gchil2605.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00004400_pilon:1792108..1793460- (Gracilaria chilensis NLEC103_M9 male)
ATGGATATGCTTACCGCCTATTCACACAACTCGTCCGATGCAGAGAGCAC
GACGCATACGCCACCAGCCTCGCCCGAGTCTACCAAACGCGCCGTCCCTA
CCGGAACAATAGAGACAATTCCGTTTGACGAACGCCAATTCTCCTCTCTT
GAACGCTCCTTCAAGCTGTCCACAAATACAACCACAGCCCTTAAGAAGAG
ACCCAGATCCCCTCTCCCGAACATTTCCGCGCAGTCCAAGCAAGCGGAAA
GTCAAAACACAAAAACATCAAAGAAACATCGTCCTTCCTCGCTGCAGCCA
ACTCGCGCGTCTGCACCTTCTGTTCTGGTTCCCAAGTCCGAATTTCATTT
ATCGTCCGTGAATGACTATCAAAATCGCGCATGGAATGCTCCGCCTTCAA
CAAGTCGAACGTTCGCTGATTTGGAGCAGTATACACCGTACATACCGAAG
CGCGCCGTGGCTTGCGAAGTCGCCCATCCGCGAGGTGCTTCTGTCGTTCA
TTTCAGTCCTGGTCATGGTCATCTCGTTCTATCAGCCGGAAATGATGCCA
GTGCAAAAGTTTGGCTATCCGCTTCTAAAAAGCTCGCAAGGACTTACATA
GGCCATTCAAAAGCTATCCGAGACGCGGTTTTCGATCATTCTGGTTCTCA
GTTTCTCACCGCTGCGTTTGACAAGAGTGTTCTTCTGTGGGATATTGAAT
CAGGAAAAGTTTTATCGTCCTTCAAAACGGAAGGTACTCCGCTTTGCGTT
CGCTTCTGTCCTCTTGATCCGTCTCAGTTTCTGGTGGGTTGCGCCGATAA
GAAAGTTTTGCAGATTGATGTCCGAGATGCATCAAACATTGTCCAGACCT
ATGACGAGCACATGGGACGTGTCAATTCTATATCTTTCATTGATTCAGGT
CGTCGATTTGTGACGAGCGCTGATGATAAGGTTATCAGAATTTGGGAATA
TGGCGTTCCAGTGGTTATCAAGTACATATCAGATCCATCTTCTCATAGTA
TGCCGGTTACTATAGTTCATCCAAATCAGAAATGGTTGGCTTGTCAAAGC
ATGGATAACACCATTCGGCTCTTTTCTACCAGTGGAAGGTTCAAGCGTAA
CGACAAGAGAGTATTTCGCGGTCATCTTGTCGCTGGCTACGCATGCGGCA
TGAGCACGTCGCCAGATGGAAGATATCTTGTTAGTGGCGATAGTCTTGGA
AGAATGTTTTACTGGGATTGGAAGACCGGCAGTTTGTTTCGAGCAGTAGA
CGCACACAAAAAGCCCTGTTGCAGCTCGGTTGATTGGCATCCAACTCAAT
CCTCATTCGTTGTATCTTGCGGTTGGGATGGTAATATCATGTTCTGGGAC
TAA
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