Gchil2599.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2599.t1
Unique Name	Gchil2599.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	737

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1775835..1778045 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010535714.1
PFAMs	DNA_pol_E_B,Dpoe2NT
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC02795
KEGG ko	ko:K02325
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG Module	M00263
GOs	GO:0000003,GO:0000228,GO:0000731,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0018130,GO:0019438,GO:0019899,GO:0019985,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048316,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051302,GO:0051716,GO:0051781,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue	1.03e-88
EggNOG OGs	KOG3818@1\|root,KOG3818@2759\|Eukaryota,37SA8@33090\|Viridiplantae,3G7UX@35493\|Streptophyta,3HRRA@3699\|Brassicales
EC	2.7.7.7
Description	DNA polymerase epsilon subunit
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2599	Gchil2599	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1775835..1778045 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2599.t1.stop1	Gchil2599.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1775835..1775837 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2599.t1.CDS1	Gchil2599.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1775835..1778045 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2599.t1.exon1	Gchil2599.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1775835..1778045 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2599.t1.start1	Gchil2599.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1778043..1778045 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2599.t1	Gchil2599.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1775835..1778045 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1775835..1778045-
coding sequence from alignment at tig00004400_pilon:1775835..1778045-

mRNA sequence

>Gchil2599.t1 ID=Gchil2599.t1|Name=Gchil2599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=737bp
MVARIANAERKRALRCFRQRGFVVQVGALEQLFTIFDTVENGESFSAFIE
KTIEILNGPGGSIDGIFSKELAASIGERLKRDTERKRSDAKAALEVINTL
TVPRWRPHSISTMQSRTAGRRVEAPERPLANASAKNKSEMFRTRYELILS
KTLRNPKFRPPTGGTFSISETSPYFQLTGIESLSGSKGDQLVLGLLTQFE
EGAWYLEDLNGTIKIDLSEAFVTSGMHTEGSFVIAQGKISEHEGEEPLFK
VQAMGTPPHESRKDTIIALGRDSNLFGGQFDMSETLELLKIEEQSFDSVF
LFISDVALDNSRVLAGLRHIWKGFLEDDIIPSVVLLMGNFLSHTFGQKPD
DVSTLCEKFGVLGDMIKDEFEELIGKTTFVIVPGPNDPGPGNVLPRPPMP
QMITKRFVDAVGSENVRLATNPCRIRFITQEIVILRDDLMQKMVRHCAVK
PDLTEAGLMHAHLVKTVSDQSYLTPLPLSARPVLWAHDHGLWLYPTPHVL
VLADKVDSYICTYERSLGMNPGSFKTDFSFIVYLPAEKRAQQSSLDSEDA
QPRGQSNEKQGEENSVGADADEVKATSDEQHEETDREQGNQTTGDENSDL
SVEGPGQGLEADVDALDSSSSPLGPPEEDIENILASGNSVAHDRSEEKGS
ERKPDDSKQPTETDEQLKQTSELPGELEIMESSEQGDISEDSDDDSHLEP
AEGLRRLDIKTLVRNSLVEDSHPKPQVGDESNSDGE*

spliced messenger RNA

>Gchil2599.t1 ID=Gchil2599.t1|Name=Gchil2599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00004400_pilon:1775835..1778045- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGCCAGAATAGCAAACGCGGAACGCAAAAGAGCTTTACGATGCTT
CAGGCAGCGTGGGTTCGTTGTGCAGGTCGGGGCGCTAGAACAATTGTTCA
CTATCTTTGACACCGTGGAGAATGGGGAAAGCTTTTCCGCTTTCATCGAG
AAGACAATCGAGATTTTAAACGGCCCGGGAGGTTCAATTGATGGCATATT
TTCGAAAGAGCTAGCAGCTTCCATTGGTGAACGACTAAAACGTGATACAG
AAAGAAAAAGAAGCGATGCGAAAGCAGCTTTAGAAGTAATAAACACCCTC
ACAGTTCCTCGATGGCGACCTCACTCGATTTCTACGATGCAATCAAGAAC
GGCGGGAAGACGAGTTGAAGCACCCGAACGCCCACTTGCCAATGCATCGG
CAAAGAACAAAAGTGAGATGTTCCGAACACGATATGAACTAATTCTCAGT
AAAACCCTCCGCAACCCAAAGTTTAGACCTCCAACTGGAGGGACATTCTC
AATATCAGAGACCAGTCCATATTTTCAATTGACTGGAATTGAAAGTCTGT
CCGGTAGCAAAGGAGACCAGTTGGTGCTTGGGTTATTGACGCAGTTTGAG
GAAGGGGCCTGGTACTTGGAAGATCTCAATGGCACCATCAAAATTGATTT
ATCAGAGGCTTTTGTTACATCCGGCATGCACACGGAAGGTAGTTTCGTTA
TTGCTCAAGGAAAAATATCGGAGCATGAAGGGGAAGAACCGCTATTTAAG
GTGCAAGCGATGGGAACTCCACCTCACGAGTCGCGTAAGGACACCATCAT
AGCTCTTGGGCGCGACTCAAATTTGTTCGGTGGTCAATTTGACATGAGCG
AAACTTTGGAGCTTCTTAAGATTGAAGAACAGAGCTTTGACTCAGTCTTT
CTCTTCATCTCTGATGTCGCTTTGGATAATTCTCGAGTTTTAGCTGGTCT
GCGACATATTTGGAAAGGATTTCTTGAGGACGACATTATTCCATCTGTAG
TTCTTCTCATGGGGAACTTCCTTTCTCATACTTTCGGGCAAAAGCCAGAC
GACGTATCTACTCTATGTGAAAAATTTGGGGTACTTGGCGATATGATCAA
GGATGAGTTTGAGGAACTAATCGGCAAGACCACGTTCGTCATTGTACCTG
GACCAAATGACCCCGGACCAGGAAATGTATTACCGAGACCACCGATGCCA
CAGATGATCACAAAACGATTCGTTGATGCCGTAGGTTCGGAAAATGTTCG
TCTTGCTACAAACCCATGTCGTATTCGATTCATCACCCAAGAGATCGTTA
TTCTACGGGACGATCTCATGCAGAAAATGGTTCGGCATTGCGCGGTAAAA
CCGGATCTAACAGAGGCTGGATTAATGCACGCTCATCTGGTGAAAACTGT
TAGCGATCAGTCATACTTGACCCCACTTCCTCTCTCCGCAAGACCAGTTC
TTTGGGCTCATGACCATGGCCTTTGGCTATATCCCACCCCCCACGTCTTA
GTTTTAGCAGACAAGGTTGATAGCTACATATGCACATACGAGAGAAGCCT
GGGCATGAACCCTGGGTCTTTCAAAACTGACTTTTCTTTCATAGTTTATC
TTCCAGCTGAAAAGCGAGCCCAACAGAGTTCTCTTGACAGCGAAGACGCA
CAACCTCGTGGACAAAGCAATGAAAAGCAAGGAGAAGAGAATAGTGTTGG
AGCTGATGCAGACGAAGTCAAGGCGACATCAGATGAACAGCATGAAGAGA
CAGACAGAGAGCAAGGAAATCAGACCACCGGAGATGAGAACTCAGACCTT
TCCGTCGAAGGGCCGGGCCAGGGGTTGGAGGCGGATGTAGATGCACTCGA
TTCGAGTTCCTCTCCACTTGGCCCCCCCGAAGAGGACATAGAGAATATTC
TCGCATCGGGCAACTCTGTTGCGCACGACCGCTCTGAAGAGAAGGGCTCT
GAAAGAAAGCCAGACGATTCAAAGCAACCGACAGAAACCGATGAACAACT
AAAACAAACTTCTGAGCTTCCAGGCGAACTTGAGATAATGGAAAGCAGTG
AACAAGGTGATATAAGCGAGGATTCCGATGATGATAGTCATCTTGAGCCA
GCCGAAGGGCTCAGACGATTAGATATAAAAACGTTGGTTCGGAACTCGCT
CGTCGAGGATTCGCATCCGAAACCCCAGGTCGGTGATGAGTCTAATTCTG
ACGGGGAGTAA

protein sequence of Gchil2599.t1

>Gchil2599.t1 ID=Gchil2599.t1|Name=Gchil2599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=737bp
MVARIANAERKRALRCFRQRGFVVQVGALEQLFTIFDTVENGESFSAFIE
KTIEILNGPGGSIDGIFSKELAASIGERLKRDTERKRSDAKAALEVINTL
TVPRWRPHSISTMQSRTAGRRVEAPERPLANASAKNKSEMFRTRYELILS
KTLRNPKFRPPTGGTFSISETSPYFQLTGIESLSGSKGDQLVLGLLTQFE
EGAWYLEDLNGTIKIDLSEAFVTSGMHTEGSFVIAQGKISEHEGEEPLFK
VQAMGTPPHESRKDTIIALGRDSNLFGGQFDMSETLELLKIEEQSFDSVF
LFISDVALDNSRVLAGLRHIWKGFLEDDIIPSVVLLMGNFLSHTFGQKPD
DVSTLCEKFGVLGDMIKDEFEELIGKTTFVIVPGPNDPGPGNVLPRPPMP
QMITKRFVDAVGSENVRLATNPCRIRFITQEIVILRDDLMQKMVRHCAVK
PDLTEAGLMHAHLVKTVSDQSYLTPLPLSARPVLWAHDHGLWLYPTPHVL
VLADKVDSYICTYERSLGMNPGSFKTDFSFIVYLPAEKRAQQSSLDSEDA
QPRGQSNEKQGEENSVGADADEVKATSDEQHEETDREQGNQTTGDENSDL
SVEGPGQGLEADVDALDSSSSPLGPPEEDIENILASGNSVAHDRSEEKGS
ERKPDDSKQPTETDEQLKQTSELPGELEIMESSEQGDISEDSDDDSHLEP
AEGLRRLDIKTLVRNSLVEDSHPKPQVGDESNSDGE*

mRNA from alignment at tig00004400_pilon:1775835..1778045-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2599.t1 ID=Gchil2599.t1|Name=Gchil2599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00004400_pilon:1775835..1778045- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGCCAGAATAGCAAACGCGGAACGCAAAAGAGCTTTACGATGCTT
CAGGCAGCGTGGGTTCGTTGTGCAGGTCGGGGCGCTAGAACAATTGTTCA
CTATCTTTGACACCGTGGAGAATGGGGAAAGCTTTTCCGCTTTCATCGAG
AAGACAATCGAGATTTTAAACGGCCCGGGAGGTTCAATTGATGGCATATT
TTCGAAAGAGCTAGCAGCTTCCATTGGTGAACGACTAAAACGTGATACAG
AAAGAAAAAGAAGCGATGCGAAAGCAGCTTTAGAAGTAATAAACACCCTC
ACAGTTCCTCGATGGCGACCTCACTCGATTTCTACGATGCAATCAAGAAC
GGCGGGAAGACGAGTTGAAGCACCCGAACGCCCACTTGCCAATGCATCGG
CAAAGAACAAAAGTGAGATGTTCCGAACACGATATGAACTAATTCTCAGT
AAAACCCTCCGCAACCCAAAGTTTAGACCTCCAACTGGAGGGACATTCTC
AATATCAGAGACCAGTCCATATTTTCAATTGACTGGAATTGAAAGTCTGT
CCGGTAGCAAAGGAGACCAGTTGGTGCTTGGGTTATTGACGCAGTTTGAG
GAAGGGGCCTGGTACTTGGAAGATCTCAATGGCACCATCAAAATTGATTT
ATCAGAGGCTTTTGTTACATCCGGCATGCACACGGAAGGTAGTTTCGTTA
TTGCTCAAGGAAAAATATCGGAGCATGAAGGGGAAGAACCGCTATTTAAG
GTGCAAGCGATGGGAACTCCACCTCACGAGTCGCGTAAGGACACCATCAT
AGCTCTTGGGCGCGACTCAAATTTGTTCGGTGGTCAATTTGACATGAGCG
AAACTTTGGAGCTTCTTAAGATTGAAGAACAGAGCTTTGACTCAGTCTTT
CTCTTCATCTCTGATGTCGCTTTGGATAATTCTCGAGTTTTAGCTGGTCT
GCGACATATTTGGAAAGGATTTCTTGAGGACGACATTATTCCATCTGTAG
TTCTTCTCATGGGGAACTTCCTTTCTCATACTTTCGGGCAAAAGCCAGAC
GACGTATCTACTCTATGTGAAAAATTTGGGGTACTTGGCGATATGATCAA
GGATGAGTTTGAGGAACTAATCGGCAAGACCACGTTCGTCATTGTACCTG
GACCAAATGACCCCGGACCAGGAAATGTATTACCGAGACCACCGATGCCA
CAGATGATCACAAAACGATTCGTTGATGCCGTAGGTTCGGAAAATGTTCG
TCTTGCTACAAACCCATGTCGTATTCGATTCATCACCCAAGAGATCGTTA
TTCTACGGGACGATCTCATGCAGAAAATGGTTCGGCATTGCGCGGTAAAA
CCGGATCTAACAGAGGCTGGATTAATGCACGCTCATCTGGTGAAAACTGT
TAGCGATCAGTCATACTTGACCCCACTTCCTCTCTCCGCAAGACCAGTTC
TTTGGGCTCATGACCATGGCCTTTGGCTATATCCCACCCCCCACGTCTTA
GTTTTAGCAGACAAGGTTGATAGCTACATATGCACATACGAGAGAAGCCT
GGGCATGAACCCTGGGTCTTTCAAAACTGACTTTTCTTTCATAGTTTATC
TTCCAGCTGAAAAGCGAGCCCAACAGAGTTCTCTTGACAGCGAAGACGCA
CAACCTCGTGGACAAAGCAATGAAAAGCAAGGAGAAGAGAATAGTGTTGG
AGCTGATGCAGACGAAGTCAAGGCGACATCAGATGAACAGCATGAAGAGA
CAGACAGAGAGCAAGGAAATCAGACCACCGGAGATGAGAACTCAGACCTT
TCCGTCGAAGGGCCGGGCCAGGGGTTGGAGGCGGATGTAGATGCACTCGA
TTCGAGTTCCTCTCCACTTGGCCCCCCCGAAGAGGACATAGAGAATATTC
TCGCATCGGGCAACTCTGTTGCGCACGACCGCTCTGAAGAGAAGGGCTCT
GAAAGAAAGCCAGACGATTCAAAGCAACCGACAGAAACCGATGAACAACT
AAAACAAACTTCTGAGCTTCCAGGCGAACTTGAGATAATGGAAAGCAGTG
AACAAGGTGATATAAGCGAGGATTCCGATGATGATAGTCATCTTGAGCCA
GCCGAAGGGCTCAGACGATTAGATATAAAAACGTTGGTTCGGAACTCGCT
CGTCGAGGATTCGCATCCGAAACCCCAGGTCGGTGATGAGTCTAATTCTG
ACGGGGAGTAA

Coding sequence (CDS) from alignment at tig00004400_pilon:1775835..1778045-

>Gchil2599.t1 ID=Gchil2599.t1|Name=Gchil2599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2211bp|location=Sequence derived from alignment at tig00004400_pilon:1775835..1778045- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGCCAGAATAGCAAACGCGGAACGCAAAAGAGCTTTACGATGCTT
CAGGCAGCGTGGGTTCGTTGTGCAGGTCGGGGCGCTAGAACAATTGTTCA
CTATCTTTGACACCGTGGAGAATGGGGAAAGCTTTTCCGCTTTCATCGAG
AAGACAATCGAGATTTTAAACGGCCCGGGAGGTTCAATTGATGGCATATT
TTCGAAAGAGCTAGCAGCTTCCATTGGTGAACGACTAAAACGTGATACAG
AAAGAAAAAGAAGCGATGCGAAAGCAGCTTTAGAAGTAATAAACACCCTC
ACAGTTCCTCGATGGCGACCTCACTCGATTTCTACGATGCAATCAAGAAC
GGCGGGAAGACGAGTTGAAGCACCCGAACGCCCACTTGCCAATGCATCGG
CAAAGAACAAAAGTGAGATGTTCCGAACACGATATGAACTAATTCTCAGT
AAAACCCTCCGCAACCCAAAGTTTAGACCTCCAACTGGAGGGACATTCTC
AATATCAGAGACCAGTCCATATTTTCAATTGACTGGAATTGAAAGTCTGT
CCGGTAGCAAAGGAGACCAGTTGGTGCTTGGGTTATTGACGCAGTTTGAG
GAAGGGGCCTGGTACTTGGAAGATCTCAATGGCACCATCAAAATTGATTT
ATCAGAGGCTTTTGTTACATCCGGCATGCACACGGAAGGTAGTTTCGTTA
TTGCTCAAGGAAAAATATCGGAGCATGAAGGGGAAGAACCGCTATTTAAG
GTGCAAGCGATGGGAACTCCACCTCACGAGTCGCGTAAGGACACCATCAT
AGCTCTTGGGCGCGACTCAAATTTGTTCGGTGGTCAATTTGACATGAGCG
AAACTTTGGAGCTTCTTAAGATTGAAGAACAGAGCTTTGACTCAGTCTTT
CTCTTCATCTCTGATGTCGCTTTGGATAATTCTCGAGTTTTAGCTGGTCT
GCGACATATTTGGAAAGGATTTCTTGAGGACGACATTATTCCATCTGTAG
TTCTTCTCATGGGGAACTTCCTTTCTCATACTTTCGGGCAAAAGCCAGAC
GACGTATCTACTCTATGTGAAAAATTTGGGGTACTTGGCGATATGATCAA
GGATGAGTTTGAGGAACTAATCGGCAAGACCACGTTCGTCATTGTACCTG
GACCAAATGACCCCGGACCAGGAAATGTATTACCGAGACCACCGATGCCA
CAGATGATCACAAAACGATTCGTTGATGCCGTAGGTTCGGAAAATGTTCG
TCTTGCTACAAACCCATGTCGTATTCGATTCATCACCCAAGAGATCGTTA
TTCTACGGGACGATCTCATGCAGAAAATGGTTCGGCATTGCGCGGTAAAA
CCGGATCTAACAGAGGCTGGATTAATGCACGCTCATCTGGTGAAAACTGT
TAGCGATCAGTCATACTTGACCCCACTTCCTCTCTCCGCAAGACCAGTTC
TTTGGGCTCATGACCATGGCCTTTGGCTATATCCCACCCCCCACGTCTTA
GTTTTAGCAGACAAGGTTGATAGCTACATATGCACATACGAGAGAAGCCT
GGGCATGAACCCTGGGTCTTTCAAAACTGACTTTTCTTTCATAGTTTATC
TTCCAGCTGAAAAGCGAGCCCAACAGAGTTCTCTTGACAGCGAAGACGCA
CAACCTCGTGGACAAAGCAATGAAAAGCAAGGAGAAGAGAATAGTGTTGG
AGCTGATGCAGACGAAGTCAAGGCGACATCAGATGAACAGCATGAAGAGA
CAGACAGAGAGCAAGGAAATCAGACCACCGGAGATGAGAACTCAGACCTT
TCCGTCGAAGGGCCGGGCCAGGGGTTGGAGGCGGATGTAGATGCACTCGA
TTCGAGTTCCTCTCCACTTGGCCCCCCCGAAGAGGACATAGAGAATATTC
TCGCATCGGGCAACTCTGTTGCGCACGACCGCTCTGAAGAGAAGGGCTCT
GAAAGAAAGCCAGACGATTCAAAGCAACCGACAGAAACCGATGAACAACT
AAAACAAACTTCTGAGCTTCCAGGCGAACTTGAGATAATGGAAAGCAGTG
AACAAGGTGATATAAGCGAGGATTCCGATGATGATAGTCATCTTGAGCCA
GCCGAAGGGCTCAGACGATTAGATATAAAAACGTTGGTTCGGAACTCGCT
CGTCGAGGATTCGCATCCGAAACCCCAGGTCGGTGATGAGTCTAATTCTG
ACGGGGAGTAA