Gchil2586.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2586.t1
Unique NameGchil2586.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1701921..1702472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO29170
Preferred nameRPP21
PFAMsRpr2
Max annot lvl33208|Metazoa
KEGG koko:K03540
KEGG Pathwayko03013,map03013
GOsGO:0000966,GO:0001682,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050896,GO:0070013,GO:0071704,GO:0090304,GO:0099116,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue6.39e-12
EggNOG OGsCOG2023@1|root,KOG4394@2759|Eukaryota,3A865@33154|Opisthokonta,3BQMA@33208|Metazoa
EC3.1.26.5
DescriptiontRNA 5'-leader removal
COG categoryA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2586Gchil2586Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1701921..1702472 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2586.t1.start1Gchil2586.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1701921..1701923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2586.t1.CDS1Gchil2586.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1701921..1702472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2586.t1.exon1Gchil2586.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1701921..1702472 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2586.t1.stop1Gchil2586.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1702470..1702472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2586.t1Gchil2586.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1701921..1702472 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2586.t1 ID=Gchil2586.t1|Name=Gchil2586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=184bp
MARKRFVKGNAKKKKAPREEDAALRLNHLFAASTILSEKAPSVAKFYARA
SKQICRRVNITVDSVTVKRMFCKKCDGTLLPGVGNHPPTYRIASRRERHL
VVKCGNCGFLKRYLARPPDHSHKKGKKIKVCDAERKVEKAHVNQREPKSD
DVKQKSSASDVMVSRDQEAAPRREWVSSSCQFQ*
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spliced messenger RNA

>Gchil2586.t1 ID=Gchil2586.t1|Name=Gchil2586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00004400_pilon:1701921..1702472+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGGAAGCGATTTGTGAAGGGGAACGCGAAGAAGAAGAAAGCCCC
GAGGGAGGAAGACGCAGCGCTTCGACTAAATCATCTATTCGCTGCATCTA
CAATACTGTCGGAAAAGGCCCCTTCTGTTGCCAAGTTCTACGCACGCGCA
TCAAAGCAAATATGCCGTCGAGTAAACATAACCGTCGATTCTGTGACTGT
CAAGCGCATGTTCTGCAAAAAGTGTGATGGTACTCTTTTACCGGGAGTTG
GTAATCACCCGCCGACATACCGCATAGCGTCACGACGAGAGCGTCATCTT
GTGGTCAAGTGCGGGAACTGCGGGTTTTTGAAGCGTTATCTAGCAAGACC
TCCAGATCATTCTCACAAGAAGGGAAAGAAGATCAAGGTGTGCGATGCAG
AAAGAAAGGTCGAAAAAGCTCATGTGAACCAGAGAGAGCCGAAATCCGAT
GACGTGAAACAAAAGAGTAGTGCTAGTGATGTGATGGTAAGTAGGGATCA
AGAGGCCGCCCCGCGGCGTGAATGGGTTTCAAGTAGTTGCCAATTTCAGT
AA
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protein sequence of Gchil2586.t1

>Gchil2586.t1 ID=Gchil2586.t1|Name=Gchil2586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=184bp
MARKRFVKGNAKKKKAPREEDAALRLNHLFAASTILSEKAPSVAKFYARA
SKQICRRVNITVDSVTVKRMFCKKCDGTLLPGVGNHPPTYRIASRRERHL
VVKCGNCGFLKRYLARPPDHSHKKGKKIKVCDAERKVEKAHVNQREPKSD
DVKQKSSASDVMVSRDQEAAPRREWVSSSCQFQ*
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mRNA from alignment at tig00004400_pilon:1701921..1702472+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2586.t1 ID=Gchil2586.t1|Name=Gchil2586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00004400_pilon:1701921..1702472+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGGAAGCGATTTGTGAAGGGGAACGCGAAGAAGAAGAAAGCCCC
GAGGGAGGAAGACGCAGCGCTTCGACTAAATCATCTATTCGCTGCATCTA
CAATACTGTCGGAAAAGGCCCCTTCTGTTGCCAAGTTCTACGCACGCGCA
TCAAAGCAAATATGCCGTCGAGTAAACATAACCGTCGATTCTGTGACTGT
CAAGCGCATGTTCTGCAAAAAGTGTGATGGTACTCTTTTACCGGGAGTTG
GTAATCACCCGCCGACATACCGCATAGCGTCACGACGAGAGCGTCATCTT
GTGGTCAAGTGCGGGAACTGCGGGTTTTTGAAGCGTTATCTAGCAAGACC
TCCAGATCATTCTCACAAGAAGGGAAAGAAGATCAAGGTGTGCGATGCAG
AAAGAAAGGTCGAAAAAGCTCATGTGAACCAGAGAGAGCCGAAATCCGAT
GACGTGAAACAAAAGAGTAGTGCTAGTGATGTGATGGTAAGTAGGGATCA
AGAGGCCGCCCCGCGGCGTGAATGGGTTTCAAGTAGTTGCCAATTTCAGT
AA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1701921..1702472+

>Gchil2586.t1 ID=Gchil2586.t1|Name=Gchil2586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00004400_pilon:1701921..1702472+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGGAAGCGATTTGTGAAGGGGAACGCGAAGAAGAAGAAAGCCCC
GAGGGAGGAAGACGCAGCGCTTCGACTAAATCATCTATTCGCTGCATCTA
CAATACTGTCGGAAAAGGCCCCTTCTGTTGCCAAGTTCTACGCACGCGCA
TCAAAGCAAATATGCCGTCGAGTAAACATAACCGTCGATTCTGTGACTGT
CAAGCGCATGTTCTGCAAAAAGTGTGATGGTACTCTTTTACCGGGAGTTG
GTAATCACCCGCCGACATACCGCATAGCGTCACGACGAGAGCGTCATCTT
GTGGTCAAGTGCGGGAACTGCGGGTTTTTGAAGCGTTATCTAGCAAGACC
TCCAGATCATTCTCACAAGAAGGGAAAGAAGATCAAGGTGTGCGATGCAG
AAAGAAAGGTCGAAAAAGCTCATGTGAACCAGAGAGAGCCGAAATCCGAT
GACGTGAAACAAAAGAGTAGTGCTAGTGATGTGATGGTAAGTAGGGATCA
AGAGGCCGCCCCGCGGCGTGAATGGGTTTCAAGTAGTTGCCAATTTCAGT
AA
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