Gchil2584.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2584.t1
Unique NameGchil2584.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1697149..1698614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008606125.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04371
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
Evalue2.08e-121
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota
EC2.7.11.24
DescriptionMAP kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2584Gchil2584Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1697149..1698614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2584.t1Gchil2584.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1697149..1698614 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2584.t1.start1Gchil2584.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1697149..1697151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2584.t1.CDS1Gchil2584.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1697149..1697424 +
Gchil2584.t1.CDS2Gchil2584.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1697555..1697736 +
Gchil2584.t1.CDS3Gchil2584.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1697912..1698614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2584.t1.exon1Gchil2584.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1697149..1697424 +
Gchil2584.t1.exon2Gchil2584.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1697555..1697736 +
Gchil2584.t1.exon3Gchil2584.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1697912..1698614 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2584.t1.intron1Gchil2584.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1697425..1697554 +
Gchil2584.t1.intron2Gchil2584.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1697737..1697911 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2584.t1.stop1Gchil2584.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1698612..1698614 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2584.t1 ID=Gchil2584.t1|Name=Gchil2584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp
MAENTNTVKEIISPLPGKRCYAIRGTSFTVHEKYQLLKAVGVGAYGVVTA
AIDTETGQKVAMKKVSGVFDNLTDAKRVLREIRLMRALDHDNILSLYDLE
APATVESFNEIYMASPLYDKDLSKILDSSVELSDEHNQYFVYQILCALKY
LHSASVMHRDLKPANILIQESCDLAICDFGLARYVDETDDAQQGMTEYVV
TRWYRAPELVLTSEYTNAVDLWALGCIMGDLLGRKVLFPGKDFKNQVEII
CGILGKPTEEDTKHVTSSRARKFLSKLPDTEGVDFSALFPNANPDAIDLM
EKLLKFNPDKRMTAEQALEHPYVREFHDAEFEACATDQINMSQIEPRNES
GTSLSKGDLRRMMLAEIFHYRPDAEIFKNNPELVPQ*
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spliced messenger RNA

>Gchil2584.t1 ID=Gchil2584.t1|Name=Gchil2584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00004400_pilon:1697149..1698614+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGAACACCAATACCGTCAAAGAAATTATCTCCCCGCTTCCTGG
CAAGAGGTGCTACGCGATTCGCGGCACCTCGTTCACCGTTCACGAAAAGT
ACCAGCTTCTCAAAGCCGTGGGCGTTGGCGCCTACGGCGTCGTCACTGCG
GCGATTGACACCGAGACCGGTCAGAAAGTGGCCATGAAGAAAGTCTCGGG
CGTTTTCGACAACCTCACCGACGCCAAACGAGTCCTCCGCGAAATCCGCC
TCATGCGCGCCCTAGACCATGACAACATTCTTTCGTTGTACGACCTTGAA
GCTCCAGCTACCGTCGAAAGTTTTAACGAGATATACATGGCTAGCCCTCT
TTATGACAAGGACCTGAGCAAAATTTTGGACTCGTCAGTCGAACTTTCAG
ACGAACATAACCAGTACTTTGTGTATCAGATTCTGTGCGCATTGAAGTAT
CTTCACAGCGCCTCCGTCATGCATCGAGACCTGAAACCAGCAAACATTCT
CATTCAAGAATCATGTGATCTCGCTATCTGCGACTTTGGTCTTGCACGCT
ACGTCGATGAGACCGATGATGCCCAGCAAGGCATGACCGAATACGTCGTG
ACGCGTTGGTATCGCGCGCCAGAGCTGGTTCTGACGAGCGAGTACACGAA
TGCCGTCGACCTGTGGGCACTCGGGTGTATCATGGGAGATTTACTGGGCC
GCAAAGTGCTCTTTCCCGGGAAGGACTTCAAGAATCAGGTCGAGATAATC
TGTGGGATCCTTGGAAAGCCAACAGAAGAAGACACCAAACACGTAACGTC
ATCCAGAGCCCGGAAGTTTCTGAGCAAGCTTCCAGATACAGAGGGCGTCG
ATTTCTCGGCATTGTTCCCGAATGCGAACCCAGATGCAATTGATCTGATG
GAAAAGCTTCTCAAGTTTAACCCCGACAAACGAATGACGGCAGAACAAGC
GCTGGAGCACCCCTATGTGCGCGAGTTTCACGATGCCGAGTTTGAAGCTT
GTGCCACCGATCAAATTAACATGAGTCAGATAGAACCGCGGAATGAAAGT
GGTACCAGTCTTTCAAAAGGCGACTTGAGACGAATGATGTTGGCAGAAAT
TTTTCACTATCGACCCGATGCAGAGATCTTCAAAAACAACCCGGAGCTGG
TACCGCAGTAG
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protein sequence of Gchil2584.t1

>Gchil2584.t1 ID=Gchil2584.t1|Name=Gchil2584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=387bp
MAENTNTVKEIISPLPGKRCYAIRGTSFTVHEKYQLLKAVGVGAYGVVTA
AIDTETGQKVAMKKVSGVFDNLTDAKRVLREIRLMRALDHDNILSLYDLE
APATVESFNEIYMASPLYDKDLSKILDSSVELSDEHNQYFVYQILCALKY
LHSASVMHRDLKPANILIQESCDLAICDFGLARYVDETDDAQQGMTEYVV
TRWYRAPELVLTSEYTNAVDLWALGCIMGDLLGRKVLFPGKDFKNQVEII
CGILGKPTEEDTKHVTSSRARKFLSKLPDTEGVDFSALFPNANPDAIDLM
EKLLKFNPDKRMTAEQALEHPYVREFHDAEFEACATDQINMSQIEPRNES
GTSLSKGDLRRMMLAEIFHYRPDAEIFKNNPELVPQ*
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mRNA from alignment at tig00004400_pilon:1697149..1698614+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2584.t1 ID=Gchil2584.t1|Name=Gchil2584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1466bp|location=Sequence derived from alignment at tig00004400_pilon:1697149..1698614+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAGAACACCAATACCGTCAAAGAAATTATCTCCCCGCTTCCTGG
CAAGAGGTGCTACGCGATTCGCGGCACCTCGTTCACCGTTCACGAAAAGT
ACCAGCTTCTCAAAGCCGTGGGCGTTGGCGCCTACGGCGTCGTCACTGCG
GCGATTGACACCGAGACCGGTCAGAAAGTGGCCATGAAGAAAGTCTCGGG
CGTTTTCGACAACCTCACCGACGCCAAACGAGTCCTCCGCGAAATCCGCC
TCATGCGCGCCCTAGACCATGACAACGTATGTGTTTGCCATCTCTGTCCA
CTTGGTCCCCTTGGCTAGAGAGACGCTTGTTCTTATTTTTTGTTCTAACA
ACAACGTACGTGCGTGAACTGTGTCTCTGAATGCTTTCGTCTTCTGCCAT
GACTAGATTCTTTCGTTGTACGACCTTGAAGCTCCAGCTACCGTCGAAAG
TTTTAACGAGATATACATGGCTAGCCCTCTTTATGACAAGGACCTGAGCA
AAATTTTGGACTCGTCAGTCGAACTTTCAGACGAACATAACCAGTACTTT
GTGTATCAGATTCTGTGCGCATTGAAGTATCTTCACAGGTAAGCATGGAG
CAAACGGCCGGAGCGGGCGTCGTTTCCGGTTGCTCCACATAATATGTCAC
AGAGCTGGCATCGAGCTGACATCGACGCCAAAAGCACAAACCCATCGCTA
ACATCTCACCGTTTTCTCAAATGCGTTGCGATCGCTGCGTCGAATTCGTC
TTGATGCTCACAGCGCCTCCGTCATGCATCGAGACCTGAAACCAGCAAAC
ATTCTCATTCAAGAATCATGTGATCTCGCTATCTGCGACTTTGGTCTTGC
ACGCTACGTCGATGAGACCGATGATGCCCAGCAAGGCATGACCGAATACG
TCGTGACGCGTTGGTATCGCGCGCCAGAGCTGGTTCTGACGAGCGAGTAC
ACGAATGCCGTCGACCTGTGGGCACTCGGGTGTATCATGGGAGATTTACT
GGGCCGCAAAGTGCTCTTTCCCGGGAAGGACTTCAAGAATCAGGTCGAGA
TAATCTGTGGGATCCTTGGAAAGCCAACAGAAGAAGACACCAAACACGTA
ACGTCATCCAGAGCCCGGAAGTTTCTGAGCAAGCTTCCAGATACAGAGGG
CGTCGATTTCTCGGCATTGTTCCCGAATGCGAACCCAGATGCAATTGATC
TGATGGAAAAGCTTCTCAAGTTTAACCCCGACAAACGAATGACGGCAGAA
CAAGCGCTGGAGCACCCCTATGTGCGCGAGTTTCACGATGCCGAGTTTGA
AGCTTGTGCCACCGATCAAATTAACATGAGTCAGATAGAACCGCGGAATG
AAAGTGGTACCAGTCTTTCAAAAGGCGACTTGAGACGAATGATGTTGGCA
GAAATTTTTCACTATCGACCCGATGCAGAGATCTTCAAAAACAACCCGGA
GCTGGTACCGCAGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1697149..1698614+

>Gchil2584.t1 ID=Gchil2584.t1|Name=Gchil2584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00004400_pilon:1697149..1698614+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAGAACACCAATACCGTCAAAGAAATTATCTCCCCGCTTCCTGG
CAAGAGGTGCTACGCGATTCGCGGCACCTCGTTCACCGTTCACGAAAAGT
ACCAGCTTCTCAAAGCCGTGGGCGTTGGCGCCTACGGCGTCGTCACTGCG
GCGATTGACACCGAGACCGGTCAGAAAGTGGCCATGAAGAAAGTCTCGGG
CGTTTTCGACAACCTCACCGACGCCAAACGAGTCCTCCGCGAAATCCGCC
TCATGCGCGCCCTAGACCATGACAACATTCTTTCGTTGTACGACCTTGAA
GCTCCAGCTACCGTCGAAAGTTTTAACGAGATATACATGGCTAGCCCTCT
TTATGACAAGGACCTGAGCAAAATTTTGGACTCGTCAGTCGAACTTTCAG
ACGAACATAACCAGTACTTTGTGTATCAGATTCTGTGCGCATTGAAGTAT
CTTCACAGCGCCTCCGTCATGCATCGAGACCTGAAACCAGCAAACATTCT
CATTCAAGAATCATGTGATCTCGCTATCTGCGACTTTGGTCTTGCACGCT
ACGTCGATGAGACCGATGATGCCCAGCAAGGCATGACCGAATACGTCGTG
ACGCGTTGGTATCGCGCGCCAGAGCTGGTTCTGACGAGCGAGTACACGAA
TGCCGTCGACCTGTGGGCACTCGGGTGTATCATGGGAGATTTACTGGGCC
GCAAAGTGCTCTTTCCCGGGAAGGACTTCAAGAATCAGGTCGAGATAATC
TGTGGGATCCTTGGAAAGCCAACAGAAGAAGACACCAAACACGTAACGTC
ATCCAGAGCCCGGAAGTTTCTGAGCAAGCTTCCAGATACAGAGGGCGTCG
ATTTCTCGGCATTGTTCCCGAATGCGAACCCAGATGCAATTGATCTGATG
GAAAAGCTTCTCAAGTTTAACCCCGACAAACGAATGACGGCAGAACAAGC
GCTGGAGCACCCCTATGTGCGCGAGTTTCACGATGCCGAGTTTGAAGCTT
GTGCCACCGATCAAATTAACATGAGTCAGATAGAACCGCGGAATGAAAGT
GGTACCAGTCTTTCAAAAGGCGACTTGAGACGAATGATGTTGGCAGAAAT
TTTTCACTATCGACCCGATGCAGAGATCTTCAAAAACAACCCGGAGCTGG
TACCGCAGTAG
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