Gchil2580.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2580.t1
Unique NameGchil2580.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1655351..1656375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LJL8
PFAMsANF_receptor,FKBP_C,SBP_bac_3
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue1.96e-44
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2580Gchil2580Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1655351..1656375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2580.t1Gchil2580.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1655351..1656375 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2580.t1.stop1Gchil2580.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1655351..1655353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2580.t1.CDS1Gchil2580.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1655351..1655863 -
Gchil2580.t1.CDS2Gchil2580.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1656229..1656375 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2580.t1.exon1Gchil2580.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1655351..1655863 -
Gchil2580.t1.exon2Gchil2580.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1656229..1656375 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2580.t1.intron1Gchil2580.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1655864..1656228 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2580.t1.start1Gchil2580.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1656373..1656375 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2580.t1 ID=Gchil2580.t1|Name=Gchil2580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=220bp
MSPRAASGGARFGLAVRVDSWSRVHVERGTKGHVYHGDVDSNCRHTWRRL
LALSAAVYSGVATAFPSAACALSKKRILAKAGSLVQLPSGVSYRDVTVGK
GYVPRNGDTVAIHYSLFYKDLEVESSRESQGLAASPLGFTYGATSGPGSI
MRGVNVGMEGMKVGGLRLITVPPELAFGSKGKAPLIPADSTVDFAVSLLS
CKRSGTNPNSVLDPKSQAY*
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spliced messenger RNA

>Gchil2580.t1 ID=Gchil2580.t1|Name=Gchil2580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00004400_pilon:1655351..1656375- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCCGCGCCGCATCTGGCGGTGCGCGCTTTGGTTTGGCCGTACG
CGTGGATTCGTGGTCTCGTGTTCACGTGGAACGTGGCACCAAGGGCCACG
TGTATCATGGCGACGTGGATTCAAATTGCAGACACACGTGGCGTCGTCTG
TTGGCGCTTTCGGCGGCCGTGTACAGCGGCGTAGCCACTGCGTTTCCGTC
GGCTGCTTGCGCGCTCAGCAAGAAGCGAATCTTAGCCAAGGCGGGGTCGC
TGGTGCAACTGCCGTCGGGTGTTTCGTACCGTGATGTCACCGTTGGTAAG
GGCTACGTGCCAAGGAACGGCGATACTGTCGCCATTCACTATTCCCTTTT
CTACAAGGACCTTGAGGTGGAGAGTAGCCGCGAGAGCCAGGGCTTGGCCG
CCAGTCCGCTGGGCTTTACCTATGGTGCCACGTCTGGCCCGGGCAGCATT
ATGAGAGGCGTCAATGTTGGCATGGAGGGCATGAAAGTTGGTGGCTTGAG
GCTTATTACCGTACCCCCCGAGTTGGCCTTCGGATCAAAAGGAAAGGCAC
CGCTCATTCCCGCCGATTCCACCGTCGACTTTGCCGTCTCCTTGCTCTCC
TGCAAGCGTTCCGGTACCAACCCGAACAGCGTGCTTGACCCCAAGTCACA
GGCCTACTGA
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protein sequence of Gchil2580.t1

>Gchil2580.t1 ID=Gchil2580.t1|Name=Gchil2580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=220bp
MSPRAASGGARFGLAVRVDSWSRVHVERGTKGHVYHGDVDSNCRHTWRRL
LALSAAVYSGVATAFPSAACALSKKRILAKAGSLVQLPSGVSYRDVTVGK
GYVPRNGDTVAIHYSLFYKDLEVESSRESQGLAASPLGFTYGATSGPGSI
MRGVNVGMEGMKVGGLRLITVPPELAFGSKGKAPLIPADSTVDFAVSLLS
CKRSGTNPNSVLDPKSQAY*
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mRNA from alignment at tig00004400_pilon:1655351..1656375-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2580.t1 ID=Gchil2580.t1|Name=Gchil2580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1025bp|location=Sequence derived from alignment at tig00004400_pilon:1655351..1656375- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCCGCGCCGCATCTGGCGGTGCGCGCTTTGGTTTGGCCGTACG
CGTGGATTCGTGGTCTCGTGTTCACGTGGAACGTGGCACCAAGGGCCACG
TGTATCATGGCGACGTGGATTCAAATTGCAGACACACGTGGCGTCGTGTA
AGAAGCTGTGCCACTTGGAAGCGCAATCTGAGATCACGCTGAGGCGCGTC
AGCTCTCTCTAGCTAGAGAGAGGCTGGCGAGGAAGTGCGCACATACGCAC
ACACGCACATCCCCGCCATCCCAGCCATCCCCGCCATCCCCGCCGTCCCC
GCCGTCCCCGCCGTCCCCGCCTTTCGCATCCAATGCGCCGCCGCCCGCAC
GCCCCGCGCGCGCCGCCCGCCCTCGCCTTCTGCGTCCCGGCGCAGCTGCA
GCTGCCGCGCACGCACGCCCCACCGCCGCTGCCCCCGCGCGCGCGCCATC
ACATCTGCGCCGTCGCGCCGCGTGCGCGCCCTCGCGCTCTGCCGCCCATT
TCACGAAGACAGCTGTTGGCGCTTTCGGCGGCCGTGTACAGCGGCGTAGC
CACTGCGTTTCCGTCGGCTGCTTGCGCGCTCAGCAAGAAGCGAATCTTAG
CCAAGGCGGGGTCGCTGGTGCAACTGCCGTCGGGTGTTTCGTACCGTGAT
GTCACCGTTGGTAAGGGCTACGTGCCAAGGAACGGCGATACTGTCGCCAT
TCACTATTCCCTTTTCTACAAGGACCTTGAGGTGGAGAGTAGCCGCGAGA
GCCAGGGCTTGGCCGCCAGTCCGCTGGGCTTTACCTATGGTGCCACGTCT
GGCCCGGGCAGCATTATGAGAGGCGTCAATGTTGGCATGGAGGGCATGAA
AGTTGGTGGCTTGAGGCTTATTACCGTACCCCCCGAGTTGGCCTTCGGAT
CAAAAGGAAAGGCACCGCTCATTCCCGCCGATTCCACCGTCGACTTTGCC
GTCTCCTTGCTCTCCTGCAAGCGTTCCGGTACCAACCCGAACAGCGTGCT
TGACCCCAAGTCACAGGCCTACTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1655351..1656375-

>Gchil2580.t1 ID=Gchil2580.t1|Name=Gchil2580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00004400_pilon:1655351..1656375- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCCGCGCCGCATCTGGCGGTGCGCGCTTTGGTTTGGCCGTACG
CGTGGATTCGTGGTCTCGTGTTCACGTGGAACGTGGCACCAAGGGCCACG
TGTATCATGGCGACGTGGATTCAAATTGCAGACACACGTGGCGTCGTCTG
TTGGCGCTTTCGGCGGCCGTGTACAGCGGCGTAGCCACTGCGTTTCCGTC
GGCTGCTTGCGCGCTCAGCAAGAAGCGAATCTTAGCCAAGGCGGGGTCGC
TGGTGCAACTGCCGTCGGGTGTTTCGTACCGTGATGTCACCGTTGGTAAG
GGCTACGTGCCAAGGAACGGCGATACTGTCGCCATTCACTATTCCCTTTT
CTACAAGGACCTTGAGGTGGAGAGTAGCCGCGAGAGCCAGGGCTTGGCCG
CCAGTCCGCTGGGCTTTACCTATGGTGCCACGTCTGGCCCGGGCAGCATT
ATGAGAGGCGTCAATGTTGGCATGGAGGGCATGAAAGTTGGTGGCTTGAG
GCTTATTACCGTACCCCCCGAGTTGGCCTTCGGATCAAAAGGAAAGGCAC
CGCTCATTCCCGCCGATTCCACCGTCGACTTTGCCGTCTCCTTGCTCTCC
TGCAAGCGTTCCGGTACCAACCCGAACAGCGTGCTTGACCCCAAGTCACA
GGCCTACTGA
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