Gchil2570.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2570.t1
Unique Name	Gchil2570.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1630652..1632154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704017.1
PFAMs	SWIB
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11650
KEGG Pathway	ko04714,ko05225,map04714,map05225
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009987,GO:0010224,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016514,GO:0019219,GO:0019222,GO:0022411,GO:0022622,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032947,GO:0032984,GO:0032986,GO:0032991,GO:0033554,GO:0034641,GO:0034728,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0046483,GO:0048096,GO:0048364,GO:0048518,GO:0048522,GO:0048580,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097458,GO:0099402,GO:1901360,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000024,GO:2000026,GO:2000112,GO:2000241,GO:2001141
Evalue	1.72e-80
EggNOG OGs	COG5531@1\|root,KOG2570@2759\|Eukaryota
Description	chromatin disassembly
COG category	B
BRITE	ko00000,ko00001,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2570	Gchil2570	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1630652..1632154 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2570.t1.start1	Gchil2570.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1630652..1630654 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2570.t1.CDS1	Gchil2570.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1630652..1632154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2570.t1.exon1	Gchil2570.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1630652..1632154 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2570.t1.stop1	Gchil2570.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1632152..1632154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2570.t1	Gchil2570.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1630652..1632154 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1630652..1632154+
coding sequence from alignment at tig00004400_pilon:1630652..1632154+

mRNA sequence

>Gchil2570.t1 ID=Gchil2570.t1|Name=Gchil2570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp
MEISGEKEDALNSESDVGRAAADFLASASERRKRARASLGPGGEPARKRH
VSSHPSKVNVEAARKSAVTLSGESPAYKKLMEMEERLDLALMRKQQDIKE
MLKSQFFSEKRVFRLYVFNTYRSQPQTPGVTSEDVASWSLRIQGQLLPKK
DPSNDRERGDVGEYQATGVPGLTTTPGPLGVSSGETPSTIPGAYQTSEPA
SVLIGPPPKCSDIFSKVIVELDKDLYPENNMIEWKRKDGEPSSNGFEISR
AGSKEFTAKIYLFVDHKPEQFRISWPLSRLIGVKKETKKNIYNSVWQYVK
KNRLQCVDDRTAVRLDTGLKTLLGPVNQTVEVMKLQQLFAIIKSHMGPLE
PVQIEYEVRLSGDVVDNQDCYDIEVNVQDTSLIESARKAGTFGLGLPQST
EYEALSEKHMVALQKIAEHKKRRDFFVGFCSNPVQFINHLILSQTRDLKV
LGGSTGRNPEEERRASFYQQQWVYEAVPRYLLRKAIADTAEETVESVLKS
*

spliced messenger RNA

>Gchil2570.t1 ID=Gchil2570.t1|Name=Gchil2570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00004400_pilon:1630652..1632154+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTTCAGGAGAAAAAGAAGATGCCCTTAACTCCGAAAGCGACGT
GGGAAGAGCAGCGGCAGATTTCTTAGCATCTGCCTCTGAGCGTCGAAAAC
GAGCGCGTGCCTCCCTGGGGCCAGGGGGAGAACCAGCTCGGAAGCGCCAC
GTTTCTTCGCATCCGTCCAAGGTGAATGTCGAGGCGGCCCGAAAGTCGGC
GGTGACTCTCTCGGGCGAATCCCCGGCATACAAAAAGCTCATGGAAATGG
AGGAGCGTCTTGATCTAGCACTCATGCGCAAACAACAAGACATCAAGGAG
ATGCTAAAATCACAATTCTTTTCCGAAAAGCGCGTTTTCAGACTTTATGT
CTTTAACACATACCGATCGCAGCCTCAGACTCCAGGAGTCACGTCAGAAG
ATGTCGCGTCCTGGTCTCTGCGCATTCAAGGTCAACTACTGCCGAAAAAA
GATCCATCAAACGATAGGGAACGAGGCGATGTGGGTGAATACCAAGCTAC
TGGGGTGCCGGGTCTCACAACAACACCTGGACCGCTTGGAGTGTCATCAG
GAGAAACGCCATCAACCATACCTGGCGCATATCAGACATCAGAGCCCGCC
AGTGTGTTGATTGGTCCTCCACCTAAGTGCTCTGATATATTCAGCAAAGT
TATTGTTGAGCTTGACAAGGATCTATATCCGGAAAATAATATGATTGAAT
GGAAGCGGAAGGATGGAGAGCCTTCTTCAAATGGCTTTGAAATATCACGG
GCCGGATCAAAAGAATTCACAGCGAAGATTTATCTTTTTGTAGATCATAA
ACCAGAGCAATTTCGCATATCATGGCCTTTGTCACGTCTGATCGGAGTTA
AGAAGGAGACAAAGAAAAATATTTATAATAGCGTATGGCAATACGTGAAA
AAGAACAGGCTTCAATGCGTCGACGACCGCACAGCCGTTCGCTTGGATAC
CGGTTTAAAGACTCTTCTTGGCCCTGTCAACCAGACTGTTGAGGTGATGA
AGCTGCAACAATTATTCGCAATCATCAAGAGCCATATGGGCCCACTGGAA
CCTGTGCAAATTGAGTACGAGGTAAGGCTAAGTGGAGATGTGGTGGACAA
TCAGGATTGCTACGACATCGAAGTGAACGTACAGGACACAAGTTTGATTG
AATCTGCTCGAAAGGCTGGGACATTTGGCCTGGGTCTCCCGCAATCAACG
GAATATGAGGCACTCAGTGAAAAGCATATGGTTGCTCTTCAGAAGATTGC
CGAGCATAAAAAGCGAAGGGATTTCTTCGTGGGCTTTTGCTCCAACCCAG
TCCAATTCATTAATCACCTTATTCTGAGTCAAACTAGGGACTTGAAGGTG
TTGGGTGGCAGTACTGGTAGAAACCCTGAAGAAGAACGCAGAGCATCTTT
TTACCAACAACAGTGGGTGTATGAAGCAGTACCTCGATATTTGCTAAGAA
AGGCAATTGCGGACACTGCTGAGGAAACTGTTGAGAGCGTCCTCAAAAGT
TAG

protein sequence of Gchil2570.t1

>Gchil2570.t1 ID=Gchil2570.t1|Name=Gchil2570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=501bp
MEISGEKEDALNSESDVGRAAADFLASASERRKRARASLGPGGEPARKRH
VSSHPSKVNVEAARKSAVTLSGESPAYKKLMEMEERLDLALMRKQQDIKE
MLKSQFFSEKRVFRLYVFNTYRSQPQTPGVTSEDVASWSLRIQGQLLPKK
DPSNDRERGDVGEYQATGVPGLTTTPGPLGVSSGETPSTIPGAYQTSEPA
SVLIGPPPKCSDIFSKVIVELDKDLYPENNMIEWKRKDGEPSSNGFEISR
AGSKEFTAKIYLFVDHKPEQFRISWPLSRLIGVKKETKKNIYNSVWQYVK
KNRLQCVDDRTAVRLDTGLKTLLGPVNQTVEVMKLQQLFAIIKSHMGPLE
PVQIEYEVRLSGDVVDNQDCYDIEVNVQDTSLIESARKAGTFGLGLPQST
EYEALSEKHMVALQKIAEHKKRRDFFVGFCSNPVQFINHLILSQTRDLKV
LGGSTGRNPEEERRASFYQQQWVYEAVPRYLLRKAIADTAEETVESVLKS
*

mRNA from alignment at tig00004400_pilon:1630652..1632154+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2570.t1 ID=Gchil2570.t1|Name=Gchil2570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00004400_pilon:1630652..1632154+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATTTCAGGAGAAAAAGAAGATGCCCTTAACTCCGAAAGCGACGT
GGGAAGAGCAGCGGCAGATTTCTTAGCATCTGCCTCTGAGCGTCGAAAAC
GAGCGCGTGCCTCCCTGGGGCCAGGGGGAGAACCAGCTCGGAAGCGCCAC
GTTTCTTCGCATCCGTCCAAGGTGAATGTCGAGGCGGCCCGAAAGTCGGC
GGTGACTCTCTCGGGCGAATCCCCGGCATACAAAAAGCTCATGGAAATGG
AGGAGCGTCTTGATCTAGCACTCATGCGCAAACAACAAGACATCAAGGAG
ATGCTAAAATCACAATTCTTTTCCGAAAAGCGCGTTTTCAGACTTTATGT
CTTTAACACATACCGATCGCAGCCTCAGACTCCAGGAGTCACGTCAGAAG
ATGTCGCGTCCTGGTCTCTGCGCATTCAAGGTCAACTACTGCCGAAAAAA
GATCCATCAAACGATAGGGAACGAGGCGATGTGGGTGAATACCAAGCTAC
TGGGGTGCCGGGTCTCACAACAACACCTGGACCGCTTGGAGTGTCATCAG
GAGAAACGCCATCAACCATACCTGGCGCATATCAGACATCAGAGCCCGCC
AGTGTGTTGATTGGTCCTCCACCTAAGTGCTCTGATATATTCAGCAAAGT
TATTGTTGAGCTTGACAAGGATCTATATCCGGAAAATAATATGATTGAAT
GGAAGCGGAAGGATGGAGAGCCTTCTTCAAATGGCTTTGAAATATCACGG
GCCGGATCAAAAGAATTCACAGCGAAGATTTATCTTTTTGTAGATCATAA
ACCAGAGCAATTTCGCATATCATGGCCTTTGTCACGTCTGATCGGAGTTA
AGAAGGAGACAAAGAAAAATATTTATAATAGCGTATGGCAATACGTGAAA
AAGAACAGGCTTCAATGCGTCGACGACCGCACAGCCGTTCGCTTGGATAC
CGGTTTAAAGACTCTTCTTGGCCCTGTCAACCAGACTGTTGAGGTGATGA
AGCTGCAACAATTATTCGCAATCATCAAGAGCCATATGGGCCCACTGGAA
CCTGTGCAAATTGAGTACGAGGTAAGGCTAAGTGGAGATGTGGTGGACAA
TCAGGATTGCTACGACATCGAAGTGAACGTACAGGACACAAGTTTGATTG
AATCTGCTCGAAAGGCTGGGACATTTGGCCTGGGTCTCCCGCAATCAACG
GAATATGAGGCACTCAGTGAAAAGCATATGGTTGCTCTTCAGAAGATTGC
CGAGCATAAAAAGCGAAGGGATTTCTTCGTGGGCTTTTGCTCCAACCCAG
TCCAATTCATTAATCACCTTATTCTGAGTCAAACTAGGGACTTGAAGGTG
TTGGGTGGCAGTACTGGTAGAAACCCTGAAGAAGAACGCAGAGCATCTTT
TTACCAACAACAGTGGGTGTATGAAGCAGTACCTCGATATTTGCTAAGAA
AGGCAATTGCGGACACTGCTGAGGAAACTGTTGAGAGCGTCCTCAAAAGT
TAG

Coding sequence (CDS) from alignment at tig00004400_pilon:1630652..1632154+

>Gchil2570.t1 ID=Gchil2570.t1|Name=Gchil2570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00004400_pilon:1630652..1632154+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATTTCAGGAGAAAAAGAAGATGCCCTTAACTCCGAAAGCGACGT
GGGAAGAGCAGCGGCAGATTTCTTAGCATCTGCCTCTGAGCGTCGAAAAC
GAGCGCGTGCCTCCCTGGGGCCAGGGGGAGAACCAGCTCGGAAGCGCCAC
GTTTCTTCGCATCCGTCCAAGGTGAATGTCGAGGCGGCCCGAAAGTCGGC
GGTGACTCTCTCGGGCGAATCCCCGGCATACAAAAAGCTCATGGAAATGG
AGGAGCGTCTTGATCTAGCACTCATGCGCAAACAACAAGACATCAAGGAG
ATGCTAAAATCACAATTCTTTTCCGAAAAGCGCGTTTTCAGACTTTATGT
CTTTAACACATACCGATCGCAGCCTCAGACTCCAGGAGTCACGTCAGAAG
ATGTCGCGTCCTGGTCTCTGCGCATTCAAGGTCAACTACTGCCGAAAAAA
GATCCATCAAACGATAGGGAACGAGGCGATGTGGGTGAATACCAAGCTAC
TGGGGTGCCGGGTCTCACAACAACACCTGGACCGCTTGGAGTGTCATCAG
GAGAAACGCCATCAACCATACCTGGCGCATATCAGACATCAGAGCCCGCC
AGTGTGTTGATTGGTCCTCCACCTAAGTGCTCTGATATATTCAGCAAAGT
TATTGTTGAGCTTGACAAGGATCTATATCCGGAAAATAATATGATTGAAT
GGAAGCGGAAGGATGGAGAGCCTTCTTCAAATGGCTTTGAAATATCACGG
GCCGGATCAAAAGAATTCACAGCGAAGATTTATCTTTTTGTAGATCATAA
ACCAGAGCAATTTCGCATATCATGGCCTTTGTCACGTCTGATCGGAGTTA
AGAAGGAGACAAAGAAAAATATTTATAATAGCGTATGGCAATACGTGAAA
AAGAACAGGCTTCAATGCGTCGACGACCGCACAGCCGTTCGCTTGGATAC
CGGTTTAAAGACTCTTCTTGGCCCTGTCAACCAGACTGTTGAGGTGATGA
AGCTGCAACAATTATTCGCAATCATCAAGAGCCATATGGGCCCACTGGAA
CCTGTGCAAATTGAGTACGAGGTAAGGCTAAGTGGAGATGTGGTGGACAA
TCAGGATTGCTACGACATCGAAGTGAACGTACAGGACACAAGTTTGATTG
AATCTGCTCGAAAGGCTGGGACATTTGGCCTGGGTCTCCCGCAATCAACG
GAATATGAGGCACTCAGTGAAAAGCATATGGTTGCTCTTCAGAAGATTGC
CGAGCATAAAAAGCGAAGGGATTTCTTCGTGGGCTTTTGCTCCAACCCAG
TCCAATTCATTAATCACCTTATTCTGAGTCAAACTAGGGACTTGAAGGTG
TTGGGTGGCAGTACTGGTAGAAACCCTGAAGAAGAACGCAGAGCATCTTT
TTACCAACAACAGTGGGTGTATGAAGCAGTACCTCGATATTTGCTAAGAA
AGGCAATTGCGGACACTGCTGAGGAAACTGTTGAGAGCGTCCTCAAAAGT
TAG