Gchil2564.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2564.t1
Unique NameGchil2564.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1618196..1619515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2564Gchil2564Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1618196..1619515 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2564.t1.start1Gchil2564.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1618196..1618198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2564.t1.CDS1Gchil2564.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1618196..1619515 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2564.t1.exon1Gchil2564.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1618196..1619515 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2564.t1.stop1Gchil2564.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1619513..1619515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2564.t1Gchil2564.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1618196..1619515 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2564.t1 ID=Gchil2564.t1|Name=Gchil2564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=440bp
MLLPSWMKKYSYQLEMCGIQKMLFALEDEKLSATFVSRSGGTKAKVTLNY
EYEEMDVIGANIPRGKREFLAYDIAPYISMMEMFLPSERSTDFSFQCLSS
DPDTCTGYRHHYIENTSLNPLLLIDARIANSKEYQWPKSLLRLIRNSVMG
KLKIVDMKELYGWKVRSTASCFGSVLSTNVRTSDMSRNLFPGTHRFFSLN
GLSRNITGRVRNSIMPCICKVLVLNRFGKRFMIGGDILTRAIESFGKKVS
DIDPTVRIEAEEVFFDNSSFHEQVSVVQQSSIVVASHGDANSNFMFLKPE
SYVFEIMPYGFKSDIFRNLSVAYGAQYELIRSQADNEVFKACVEHYNSNG
GPSLTQYLISWERGAQMFWNETIQRRENVGSNFEIPEDEDQESSASLKNL
RECASYQRLSVDLKDLARRVVQVAVRQCRVEGDLGFLHH*
back to top

spliced messenger RNA

>Gchil2564.t1 ID=Gchil2564.t1|Name=Gchil2564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00004400_pilon:1618196..1619515+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTGCCGTCCTGGATGAAAAAATATTCTTATCAACTTGAAATGTG
CGGTATTCAGAAGATGTTATTTGCGCTAGAAGATGAAAAGCTATCCGCCA
CTTTTGTTTCAAGATCTGGGGGAACAAAAGCCAAGGTAACTTTAAATTAT
GAGTATGAAGAAATGGATGTGATAGGAGCAAATATACCTCGAGGGAAACG
TGAGTTCTTAGCTTACGATATTGCTCCGTACATTTCTATGATGGAGATGT
TCTTACCTTCAGAGAGGTCTACCGATTTCAGTTTTCAATGTTTGTCGAGC
GATCCCGACACTTGTACCGGATATCGACACCATTATATCGAGAACACTTC
GCTTAATCCCTTGCTTTTAATTGATGCACGTATTGCAAACTCGAAGGAAT
ATCAGTGGCCCAAAAGCCTCCTGCGACTGATAAGAAACAGTGTCATGGGC
AAATTAAAGATTGTGGACATGAAAGAACTTTACGGATGGAAGGTTCGCTC
AACGGCTTCATGTTTTGGCTCAGTGCTTTCTACGAATGTTCGAACTAGTG
ACATGTCTCGCAATTTATTCCCTGGAACACATCGCTTTTTTTCTTTGAAT
GGCCTGTCCAGAAACATCACAGGTCGAGTCCGGAACTCAATTATGCCATG
CATATGCAAGGTTTTGGTTTTGAATCGATTTGGAAAGAGATTTATGATAG
GAGGTGACATTTTGACGAGAGCTATAGAATCCTTTGGAAAGAAAGTGTCG
GACATCGATCCGACTGTGCGCATAGAGGCAGAAGAAGTCTTCTTCGATAA
CTCATCCTTCCATGAGCAGGTATCAGTTGTACAACAATCTAGCATCGTGG
TGGCATCTCATGGAGATGCAAACTCCAATTTCATGTTCCTTAAACCGGAG
TCATATGTCTTTGAAATTATGCCCTACGGATTCAAATCGGATATTTTCCG
GAACTTATCAGTCGCGTATGGGGCCCAGTATGAACTAATTCGGTCTCAAG
CCGATAATGAGGTGTTTAAGGCATGCGTAGAACACTACAACTCAAACGGA
GGCCCTTCATTGACTCAATATCTTATCTCTTGGGAGCGGGGTGCACAAAT
GTTCTGGAACGAGACAATACAACGTAGAGAAAACGTTGGGTCCAACTTCG
AGATACCAGAAGACGAAGACCAAGAAAGCTCTGCTTCGTTGAAGAATTTG
AGAGAATGTGCCTCATATCAGCGCCTCAGCGTAGATCTCAAAGACTTGGC
GAGAAGAGTCGTACAGGTAGCGGTCCGACAGTGTAGAGTTGAGGGTGATT
TGGGGTTCCTACACCACTGA
back to top

protein sequence of Gchil2564.t1

>Gchil2564.t1 ID=Gchil2564.t1|Name=Gchil2564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=440bp
MLLPSWMKKYSYQLEMCGIQKMLFALEDEKLSATFVSRSGGTKAKVTLNY
EYEEMDVIGANIPRGKREFLAYDIAPYISMMEMFLPSERSTDFSFQCLSS
DPDTCTGYRHHYIENTSLNPLLLIDARIANSKEYQWPKSLLRLIRNSVMG
KLKIVDMKELYGWKVRSTASCFGSVLSTNVRTSDMSRNLFPGTHRFFSLN
GLSRNITGRVRNSIMPCICKVLVLNRFGKRFMIGGDILTRAIESFGKKVS
DIDPTVRIEAEEVFFDNSSFHEQVSVVQQSSIVVASHGDANSNFMFLKPE
SYVFEIMPYGFKSDIFRNLSVAYGAQYELIRSQADNEVFKACVEHYNSNG
GPSLTQYLISWERGAQMFWNETIQRRENVGSNFEIPEDEDQESSASLKNL
RECASYQRLSVDLKDLARRVVQVAVRQCRVEGDLGFLHH*
back to top

mRNA from alignment at tig00004400_pilon:1618196..1619515+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2564.t1 ID=Gchil2564.t1|Name=Gchil2564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00004400_pilon:1618196..1619515+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCTGCCGTCCTGGATGAAAAAATATTCTTATCAACTTGAAATGTG
CGGTATTCAGAAGATGTTATTTGCGCTAGAAGATGAAAAGCTATCCGCCA
CTTTTGTTTCAAGATCTGGGGGAACAAAAGCCAAGGTAACTTTAAATTAT
GAGTATGAAGAAATGGATGTGATAGGAGCAAATATACCTCGAGGGAAACG
TGAGTTCTTAGCTTACGATATTGCTCCGTACATTTCTATGATGGAGATGT
TCTTACCTTCAGAGAGGTCTACCGATTTCAGTTTTCAATGTTTGTCGAGC
GATCCCGACACTTGTACCGGATATCGACACCATTATATCGAGAACACTTC
GCTTAATCCCTTGCTTTTAATTGATGCACGTATTGCAAACTCGAAGGAAT
ATCAGTGGCCCAAAAGCCTCCTGCGACTGATAAGAAACAGTGTCATGGGC
AAATTAAAGATTGTGGACATGAAAGAACTTTACGGATGGAAGGTTCGCTC
AACGGCTTCATGTTTTGGCTCAGTGCTTTCTACGAATGTTCGAACTAGTG
ACATGTCTCGCAATTTATTCCCTGGAACACATCGCTTTTTTTCTTTGAAT
GGCCTGTCCAGAAACATCACAGGTCGAGTCCGGAACTCAATTATGCCATG
CATATGCAAGGTTTTGGTTTTGAATCGATTTGGAAAGAGATTTATGATAG
GAGGTGACATTTTGACGAGAGCTATAGAATCCTTTGGAAAGAAAGTGTCG
GACATCGATCCGACTGTGCGCATAGAGGCAGAAGAAGTCTTCTTCGATAA
CTCATCCTTCCATGAGCAGGTATCAGTTGTACAACAATCTAGCATCGTGG
TGGCATCTCATGGAGATGCAAACTCCAATTTCATGTTCCTTAAACCGGAG
TCATATGTCTTTGAAATTATGCCCTACGGATTCAAATCGGATATTTTCCG
GAACTTATCAGTCGCGTATGGGGCCCAGTATGAACTAATTCGGTCTCAAG
CCGATAATGAGGTGTTTAAGGCATGCGTAGAACACTACAACTCAAACGGA
GGCCCTTCATTGACTCAATATCTTATCTCTTGGGAGCGGGGTGCACAAAT
GTTCTGGAACGAGACAATACAACGTAGAGAAAACGTTGGGTCCAACTTCG
AGATACCAGAAGACGAAGACCAAGAAAGCTCTGCTTCGTTGAAGAATTTG
AGAGAATGTGCCTCATATCAGCGCCTCAGCGTAGATCTCAAAGACTTGGC
GAGAAGAGTCGTACAGGTAGCGGTCCGACAGTGTAGAGTTGAGGGTGATT
TGGGGTTCCTACACCACTGA
back to top

Coding sequence (CDS) from alignment at tig00004400_pilon:1618196..1619515+

>Gchil2564.t1 ID=Gchil2564.t1|Name=Gchil2564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00004400_pilon:1618196..1619515+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCTGCCGTCCTGGATGAAAAAATATTCTTATCAACTTGAAATGTG
CGGTATTCAGAAGATGTTATTTGCGCTAGAAGATGAAAAGCTATCCGCCA
CTTTTGTTTCAAGATCTGGGGGAACAAAAGCCAAGGTAACTTTAAATTAT
GAGTATGAAGAAATGGATGTGATAGGAGCAAATATACCTCGAGGGAAACG
TGAGTTCTTAGCTTACGATATTGCTCCGTACATTTCTATGATGGAGATGT
TCTTACCTTCAGAGAGGTCTACCGATTTCAGTTTTCAATGTTTGTCGAGC
GATCCCGACACTTGTACCGGATATCGACACCATTATATCGAGAACACTTC
GCTTAATCCCTTGCTTTTAATTGATGCACGTATTGCAAACTCGAAGGAAT
ATCAGTGGCCCAAAAGCCTCCTGCGACTGATAAGAAACAGTGTCATGGGC
AAATTAAAGATTGTGGACATGAAAGAACTTTACGGATGGAAGGTTCGCTC
AACGGCTTCATGTTTTGGCTCAGTGCTTTCTACGAATGTTCGAACTAGTG
ACATGTCTCGCAATTTATTCCCTGGAACACATCGCTTTTTTTCTTTGAAT
GGCCTGTCCAGAAACATCACAGGTCGAGTCCGGAACTCAATTATGCCATG
CATATGCAAGGTTTTGGTTTTGAATCGATTTGGAAAGAGATTTATGATAG
GAGGTGACATTTTGACGAGAGCTATAGAATCCTTTGGAAAGAAAGTGTCG
GACATCGATCCGACTGTGCGCATAGAGGCAGAAGAAGTCTTCTTCGATAA
CTCATCCTTCCATGAGCAGGTATCAGTTGTACAACAATCTAGCATCGTGG
TGGCATCTCATGGAGATGCAAACTCCAATTTCATGTTCCTTAAACCGGAG
TCATATGTCTTTGAAATTATGCCCTACGGATTCAAATCGGATATTTTCCG
GAACTTATCAGTCGCGTATGGGGCCCAGTATGAACTAATTCGGTCTCAAG
CCGATAATGAGGTGTTTAAGGCATGCGTAGAACACTACAACTCAAACGGA
GGCCCTTCATTGACTCAATATCTTATCTCTTGGGAGCGGGGTGCACAAAT
GTTCTGGAACGAGACAATACAACGTAGAGAAAACGTTGGGTCCAACTTCG
AGATACCAGAAGACGAAGACCAAGAAAGCTCTGCTTCGTTGAAGAATTTG
AGAGAATGTGCCTCATATCAGCGCCTCAGCGTAGATCTCAAAGACTTGGC
GAGAAGAGTCGTACAGGTAGCGGTCCGACAGTGTAGAGTTGAGGGTGATT
TGGGGTTCCTACACCACTGA
back to top