Gchil2563.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2563.t1
Unique Name	Gchil2563.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	762

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1614149..1616434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709333.1
PFAMs	DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N,DUF726,VPS9
Max annot lvl	2759\|Eukaryota
Evalue	8.94e-44
EggNOG OGs	KOG2385@1\|root,KOG2385@2759\|Eukaryota
Description	Protein of unknown function (DUF726)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2563	Gchil2563	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1614149..1616434 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2563.t1.start1	Gchil2563.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1614149..1614151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2563.t1.CDS1	Gchil2563.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1614149..1616434 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2563.t1.exon1	Gchil2563.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1614149..1616434 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2563.t1.stop1	Gchil2563.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1616432..1616434 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2563.t1	Gchil2563.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1614149..1616434 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1614149..1616434+
coding sequence from alignment at tig00004400_pilon:1614149..1616434+

mRNA sequence

>Gchil2563.t1 ID=Gchil2563.t1|Name=Gchil2563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp
MSFENSADSATSRTSSAQGQCFCFEPAGPGQNLPAAGILAACVASLAPDP
PWLRAYLTRTLHAFSLPPGARDGLIQQALEIASSHNAVPRASEVADAYLR
ASSFGQSQAIPLISAVLEADVINCTVYDARARESVMRYISALNLPPRILY
TAEHQLAELVIALAENSTVNGENVESVGEDEAHTRRRTNMKWLKVGAAGL
FGGLALGISGGLIAPALLPALGTVGLASATGPLAALGGGGAVAVGSLFGA
AGAGVGAAAMKSRTGDIDEFSFEPCTPSHDSSSHAYDTARITPTENIHEA
YIQLSMETRAIGGLLVWEILTSQQFDMVVPARIAFGVQTQDLAHGAARPV
SKWLLSEQFMDVGGLDRNGKGKRRRTTGAVTITENKMYVLRFRLMPGSLT
VNISYRTAFVPPGIEPPVWIMGENEEHATEHEKSKPRSLSMAILVPGLLS
AAENSAYPGMCADQFHKTTPVLAKFGIQTFALRWESQLLLELSNALRKLI
ARMTVSIAAQNGAMMVLPALVGAVALPVSIIGALRTLIGNIWAKAISHAA
ECGYMLAAELASRSFGNRPIVLAGFSVGALVVFSCLQELARRKLDGIVHD
AYLIGAPCTADLAAWREVRSVVSGRLVNAYNPRDWYLELYHRGTNLGSVA
GNRPVKDVEGIANVENVCLTQEQVANHMDYAKRSQQILVDLGIANPEVRR
PWSMDLAVSTQIHEPTHNAEHSSDIFESETGASHSEELDVVLFKSKRRAK
PDRRKYQNSDE*

spliced messenger RNA

>Gchil2563.t1 ID=Gchil2563.t1|Name=Gchil2563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004400_pilon:1614149..1616434+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTTGAAAACAGTGCAGACTCTGCGACCTCACGCACTTCCTCAGC
ACAAGGTCAATGCTTCTGCTTTGAACCGGCTGGTCCAGGGCAAAACCTTC
CCGCCGCCGGAATTCTCGCTGCATGTGTCGCATCTTTGGCACCTGATCCG
CCGTGGTTGAGAGCATATCTAACCAGAACTCTCCACGCGTTCTCGCTGCC
ACCTGGTGCTCGCGATGGCCTCATTCAGCAGGCTTTAGAGATCGCATCAT
CTCACAACGCAGTGCCTCGTGCCTCAGAAGTTGCCGATGCGTATCTCCGC
GCCTCCTCTTTTGGTCAGTCCCAAGCTATTCCCCTCATCTCTGCAGTTCT
TGAAGCAGATGTCATTAACTGCACCGTTTACGATGCGCGAGCTAGAGAAT
CCGTTATGCGGTATATCTCTGCTTTGAATCTTCCACCACGCATTCTATAC
ACTGCTGAGCATCAACTTGCTGAACTCGTGATCGCCCTGGCGGAAAATTC
GACTGTTAATGGTGAAAACGTCGAGTCCGTGGGGGAGGACGAGGCTCATA
CGCGCCGTAGGACAAACATGAAATGGCTTAAGGTTGGCGCTGCAGGTCTA
TTTGGTGGTCTTGCCCTTGGTATAAGCGGCGGACTGATTGCTCCTGCTTT
GTTGCCCGCTTTAGGTACGGTTGGACTGGCTAGCGCCACTGGTCCCTTGG
CAGCCCTTGGCGGTGGTGGTGCTGTAGCTGTCGGAAGCCTCTTTGGAGCA
GCAGGCGCCGGCGTTGGTGCGGCAGCTATGAAAAGCCGCACCGGTGACAT
AGACGAGTTTTCGTTTGAGCCATGCACTCCTTCACATGACAGTTCATCCC
ATGCATATGACACGGCGCGCATAACTCCGACGGAGAACATTCACGAAGCT
TATATTCAGTTATCCATGGAGACAAGAGCCATCGGCGGGCTCTTGGTGTG
GGAAATTCTTACCTCTCAACAGTTTGACATGGTCGTTCCAGCGCGAATTG
CGTTTGGTGTTCAAACTCAAGATTTGGCGCATGGGGCTGCGCGGCCAGTG
TCCAAATGGCTGCTTTCGGAGCAGTTCATGGACGTCGGTGGGCTCGATAG
GAATGGGAAAGGTAAACGTCGACGAACCACTGGAGCAGTCACAATAACTG
AGAACAAAATGTATGTGCTTCGTTTTCGACTGATGCCGGGTTCTCTCACT
GTGAATATTTCGTATCGTACTGCGTTTGTGCCTCCGGGAATAGAGCCTCC
TGTGTGGATCATGGGCGAGAATGAGGAACATGCTACGGAGCATGAGAAGA
GTAAACCTAGATCTCTGTCGATGGCAATCCTCGTTCCTGGGCTGCTTAGC
GCTGCTGAAAACAGCGCATATCCTGGGATGTGCGCCGACCAGTTTCACAA
GACAACCCCGGTTTTGGCAAAGTTTGGGATACAGACGTTTGCATTGAGGT
GGGAATCTCAACTTCTTTTAGAACTGAGTAATGCGCTCAGGAAACTTATT
GCAAGGATGACTGTTTCTATTGCTGCACAGAACGGTGCGATGATGGTTTT
GCCAGCGTTAGTGGGCGCTGTAGCTCTCCCCGTATCAATTATCGGTGCTC
TGCGGACACTAATTGGAAACATATGGGCGAAAGCAATCTCCCATGCAGCA
GAATGCGGATACATGCTTGCCGCTGAACTAGCTTCACGTTCGTTCGGAAA
TCGTCCGATTGTACTAGCAGGTTTCTCCGTGGGTGCGCTAGTAGTATTTA
GTTGTTTGCAAGAGCTTGCGCGACGCAAACTCGACGGCATTGTCCATGAC
GCGTATCTTATCGGTGCTCCTTGCACTGCAGACCTCGCGGCGTGGCGAGA
AGTTCGATCTGTTGTGTCGGGCAGGTTGGTGAATGCCTACAACCCACGTG
ACTGGTATCTGGAACTGTACCATAGAGGAACGAATTTAGGGTCAGTAGCT
GGAAACCGGCCTGTGAAGGACGTGGAAGGCATAGCTAATGTTGAAAATGT
GTGTTTGACTCAAGAACAAGTTGCCAACCATATGGACTACGCAAAACGAT
CACAGCAGATACTTGTTGATCTTGGAATCGCAAATCCTGAAGTCAGGAGA
CCATGGTCGATGGATTTGGCAGTTTCAACCCAAATTCATGAGCCTACTCA
TAATGCAGAACATAGTTCTGACATCTTCGAATCCGAAACTGGTGCTTCAC
ATTCTGAAGAATTAGACGTTGTGCTGTTCAAGTCGAAGAGAAGGGCGAAG
CCGGACAGAAGAAAATACCAGAACTCTGATGAATAA

protein sequence of Gchil2563.t1

>Gchil2563.t1 ID=Gchil2563.t1|Name=Gchil2563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=762bp
MSFENSADSATSRTSSAQGQCFCFEPAGPGQNLPAAGILAACVASLAPDP
PWLRAYLTRTLHAFSLPPGARDGLIQQALEIASSHNAVPRASEVADAYLR
ASSFGQSQAIPLISAVLEADVINCTVYDARARESVMRYISALNLPPRILY
TAEHQLAELVIALAENSTVNGENVESVGEDEAHTRRRTNMKWLKVGAAGL
FGGLALGISGGLIAPALLPALGTVGLASATGPLAALGGGGAVAVGSLFGA
AGAGVGAAAMKSRTGDIDEFSFEPCTPSHDSSSHAYDTARITPTENIHEA
YIQLSMETRAIGGLLVWEILTSQQFDMVVPARIAFGVQTQDLAHGAARPV
SKWLLSEQFMDVGGLDRNGKGKRRRTTGAVTITENKMYVLRFRLMPGSLT
VNISYRTAFVPPGIEPPVWIMGENEEHATEHEKSKPRSLSMAILVPGLLS
AAENSAYPGMCADQFHKTTPVLAKFGIQTFALRWESQLLLELSNALRKLI
ARMTVSIAAQNGAMMVLPALVGAVALPVSIIGALRTLIGNIWAKAISHAA
ECGYMLAAELASRSFGNRPIVLAGFSVGALVVFSCLQELARRKLDGIVHD
AYLIGAPCTADLAAWREVRSVVSGRLVNAYNPRDWYLELYHRGTNLGSVA
GNRPVKDVEGIANVENVCLTQEQVANHMDYAKRSQQILVDLGIANPEVRR
PWSMDLAVSTQIHEPTHNAEHSSDIFESETGASHSEELDVVLFKSKRRAK
PDRRKYQNSDE*

mRNA from alignment at tig00004400_pilon:1614149..1616434+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2563.t1 ID=Gchil2563.t1|Name=Gchil2563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004400_pilon:1614149..1616434+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTTTGAAAACAGTGCAGACTCTGCGACCTCACGCACTTCCTCAGC
ACAAGGTCAATGCTTCTGCTTTGAACCGGCTGGTCCAGGGCAAAACCTTC
CCGCCGCCGGAATTCTCGCTGCATGTGTCGCATCTTTGGCACCTGATCCG
CCGTGGTTGAGAGCATATCTAACCAGAACTCTCCACGCGTTCTCGCTGCC
ACCTGGTGCTCGCGATGGCCTCATTCAGCAGGCTTTAGAGATCGCATCAT
CTCACAACGCAGTGCCTCGTGCCTCAGAAGTTGCCGATGCGTATCTCCGC
GCCTCCTCTTTTGGTCAGTCCCAAGCTATTCCCCTCATCTCTGCAGTTCT
TGAAGCAGATGTCATTAACTGCACCGTTTACGATGCGCGAGCTAGAGAAT
CCGTTATGCGGTATATCTCTGCTTTGAATCTTCCACCACGCATTCTATAC
ACTGCTGAGCATCAACTTGCTGAACTCGTGATCGCCCTGGCGGAAAATTC
GACTGTTAATGGTGAAAACGTCGAGTCCGTGGGGGAGGACGAGGCTCATA
CGCGCCGTAGGACAAACATGAAATGGCTTAAGGTTGGCGCTGCAGGTCTA
TTTGGTGGTCTTGCCCTTGGTATAAGCGGCGGACTGATTGCTCCTGCTTT
GTTGCCCGCTTTAGGTACGGTTGGACTGGCTAGCGCCACTGGTCCCTTGG
CAGCCCTTGGCGGTGGTGGTGCTGTAGCTGTCGGAAGCCTCTTTGGAGCA
GCAGGCGCCGGCGTTGGTGCGGCAGCTATGAAAAGCCGCACCGGTGACAT
AGACGAGTTTTCGTTTGAGCCATGCACTCCTTCACATGACAGTTCATCCC
ATGCATATGACACGGCGCGCATAACTCCGACGGAGAACATTCACGAAGCT
TATATTCAGTTATCCATGGAGACAAGAGCCATCGGCGGGCTCTTGGTGTG
GGAAATTCTTACCTCTCAACAGTTTGACATGGTCGTTCCAGCGCGAATTG
CGTTTGGTGTTCAAACTCAAGATTTGGCGCATGGGGCTGCGCGGCCAGTG
TCCAAATGGCTGCTTTCGGAGCAGTTCATGGACGTCGGTGGGCTCGATAG
GAATGGGAAAGGTAAACGTCGACGAACCACTGGAGCAGTCACAATAACTG
AGAACAAAATGTATGTGCTTCGTTTTCGACTGATGCCGGGTTCTCTCACT
GTGAATATTTCGTATCGTACTGCGTTTGTGCCTCCGGGAATAGAGCCTCC
TGTGTGGATCATGGGCGAGAATGAGGAACATGCTACGGAGCATGAGAAGA
GTAAACCTAGATCTCTGTCGATGGCAATCCTCGTTCCTGGGCTGCTTAGC
GCTGCTGAAAACAGCGCATATCCTGGGATGTGCGCCGACCAGTTTCACAA
GACAACCCCGGTTTTGGCAAAGTTTGGGATACAGACGTTTGCATTGAGGT
GGGAATCTCAACTTCTTTTAGAACTGAGTAATGCGCTCAGGAAACTTATT
GCAAGGATGACTGTTTCTATTGCTGCACAGAACGGTGCGATGATGGTTTT
GCCAGCGTTAGTGGGCGCTGTAGCTCTCCCCGTATCAATTATCGGTGCTC
TGCGGACACTAATTGGAAACATATGGGCGAAAGCAATCTCCCATGCAGCA
GAATGCGGATACATGCTTGCCGCTGAACTAGCTTCACGTTCGTTCGGAAA
TCGTCCGATTGTACTAGCAGGTTTCTCCGTGGGTGCGCTAGTAGTATTTA
GTTGTTTGCAAGAGCTTGCGCGACGCAAACTCGACGGCATTGTCCATGAC
GCGTATCTTATCGGTGCTCCTTGCACTGCAGACCTCGCGGCGTGGCGAGA
AGTTCGATCTGTTGTGTCGGGCAGGTTGGTGAATGCCTACAACCCACGTG
ACTGGTATCTGGAACTGTACCATAGAGGAACGAATTTAGGGTCAGTAGCT
GGAAACCGGCCTGTGAAGGACGTGGAAGGCATAGCTAATGTTGAAAATGT
GTGTTTGACTCAAGAACAAGTTGCCAACCATATGGACTACGCAAAACGAT
CACAGCAGATACTTGTTGATCTTGGAATCGCAAATCCTGAAGTCAGGAGA
CCATGGTCGATGGATTTGGCAGTTTCAACCCAAATTCATGAGCCTACTCA
TAATGCAGAACATAGTTCTGACATCTTCGAATCCGAAACTGGTGCTTCAC
ATTCTGAAGAATTAGACGTTGTGCTGTTCAAGTCGAAGAGAAGGGCGAAG
CCGGACAGAAGAAAATACCAGAACTCTGATGAATAA

Coding sequence (CDS) from alignment at tig00004400_pilon:1614149..1616434+

>Gchil2563.t1 ID=Gchil2563.t1|Name=Gchil2563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2286bp|location=Sequence derived from alignment at tig00004400_pilon:1614149..1616434+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTTTGAAAACAGTGCAGACTCTGCGACCTCACGCACTTCCTCAGC
ACAAGGTCAATGCTTCTGCTTTGAACCGGCTGGTCCAGGGCAAAACCTTC
CCGCCGCCGGAATTCTCGCTGCATGTGTCGCATCTTTGGCACCTGATCCG
CCGTGGTTGAGAGCATATCTAACCAGAACTCTCCACGCGTTCTCGCTGCC
ACCTGGTGCTCGCGATGGCCTCATTCAGCAGGCTTTAGAGATCGCATCAT
CTCACAACGCAGTGCCTCGTGCCTCAGAAGTTGCCGATGCGTATCTCCGC
GCCTCCTCTTTTGGTCAGTCCCAAGCTATTCCCCTCATCTCTGCAGTTCT
TGAAGCAGATGTCATTAACTGCACCGTTTACGATGCGCGAGCTAGAGAAT
CCGTTATGCGGTATATCTCTGCTTTGAATCTTCCACCACGCATTCTATAC
ACTGCTGAGCATCAACTTGCTGAACTCGTGATCGCCCTGGCGGAAAATTC
GACTGTTAATGGTGAAAACGTCGAGTCCGTGGGGGAGGACGAGGCTCATA
CGCGCCGTAGGACAAACATGAAATGGCTTAAGGTTGGCGCTGCAGGTCTA
TTTGGTGGTCTTGCCCTTGGTATAAGCGGCGGACTGATTGCTCCTGCTTT
GTTGCCCGCTTTAGGTACGGTTGGACTGGCTAGCGCCACTGGTCCCTTGG
CAGCCCTTGGCGGTGGTGGTGCTGTAGCTGTCGGAAGCCTCTTTGGAGCA
GCAGGCGCCGGCGTTGGTGCGGCAGCTATGAAAAGCCGCACCGGTGACAT
AGACGAGTTTTCGTTTGAGCCATGCACTCCTTCACATGACAGTTCATCCC
ATGCATATGACACGGCGCGCATAACTCCGACGGAGAACATTCACGAAGCT
TATATTCAGTTATCCATGGAGACAAGAGCCATCGGCGGGCTCTTGGTGTG
GGAAATTCTTACCTCTCAACAGTTTGACATGGTCGTTCCAGCGCGAATTG
CGTTTGGTGTTCAAACTCAAGATTTGGCGCATGGGGCTGCGCGGCCAGTG
TCCAAATGGCTGCTTTCGGAGCAGTTCATGGACGTCGGTGGGCTCGATAG
GAATGGGAAAGGTAAACGTCGACGAACCACTGGAGCAGTCACAATAACTG
AGAACAAAATGTATGTGCTTCGTTTTCGACTGATGCCGGGTTCTCTCACT
GTGAATATTTCGTATCGTACTGCGTTTGTGCCTCCGGGAATAGAGCCTCC
TGTGTGGATCATGGGCGAGAATGAGGAACATGCTACGGAGCATGAGAAGA
GTAAACCTAGATCTCTGTCGATGGCAATCCTCGTTCCTGGGCTGCTTAGC
GCTGCTGAAAACAGCGCATATCCTGGGATGTGCGCCGACCAGTTTCACAA
GACAACCCCGGTTTTGGCAAAGTTTGGGATACAGACGTTTGCATTGAGGT
GGGAATCTCAACTTCTTTTAGAACTGAGTAATGCGCTCAGGAAACTTATT
GCAAGGATGACTGTTTCTATTGCTGCACAGAACGGTGCGATGATGGTTTT
GCCAGCGTTAGTGGGCGCTGTAGCTCTCCCCGTATCAATTATCGGTGCTC
TGCGGACACTAATTGGAAACATATGGGCGAAAGCAATCTCCCATGCAGCA
GAATGCGGATACATGCTTGCCGCTGAACTAGCTTCACGTTCGTTCGGAAA
TCGTCCGATTGTACTAGCAGGTTTCTCCGTGGGTGCGCTAGTAGTATTTA
GTTGTTTGCAAGAGCTTGCGCGACGCAAACTCGACGGCATTGTCCATGAC
GCGTATCTTATCGGTGCTCCTTGCACTGCAGACCTCGCGGCGTGGCGAGA
AGTTCGATCTGTTGTGTCGGGCAGGTTGGTGAATGCCTACAACCCACGTG
ACTGGTATCTGGAACTGTACCATAGAGGAACGAATTTAGGGTCAGTAGCT
GGAAACCGGCCTGTGAAGGACGTGGAAGGCATAGCTAATGTTGAAAATGT
GTGTTTGACTCAAGAACAAGTTGCCAACCATATGGACTACGCAAAACGAT
CACAGCAGATACTTGTTGATCTTGGAATCGCAAATCCTGAAGTCAGGAGA
CCATGGTCGATGGATTTGGCAGTTTCAACCCAAATTCATGAGCCTACTCA
TAATGCAGAACATAGTTCTGACATCTTCGAATCCGAAACTGGTGCTTCAC
ATTCTGAAGAATTAGACGTTGTGCTGTTCAAGTCGAAGAGAAGGGCGAAG
CCGGACAGAAGAAAATACCAGAACTCTGATGAATAA