Gchil2559.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2559.t1
Unique NameGchil2559.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1602069..1602977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD09353
Preferred nameRNMTL1
PFAMsSpoU_methylase
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02723,RC02817
KEGG koko:K00140,ko:K03437,ko:K03768,ko:K20095
KEGG ReactionR00705,R00706,R00922,R00935
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG ModuleM00013
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Evalue3.7e-53
EggNOG OGsCOG0566@1|root,KOG2506@2759|Eukaryota
EC1.2.1.18,1.2.1.27,5.2.1.8
DescriptionRNA methyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2559Gchil2559Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1602069..1602977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2559.t1Gchil2559.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1602069..1602977 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2559.t1.stop1Gchil2559.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1602069..1602071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2559.t1.CDS1Gchil2559.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1602069..1602584 -
Gchil2559.t1.CDS2Gchil2559.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1602681..1602977 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2559.t1.exon1Gchil2559.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1602069..1602584 -
Gchil2559.t1.exon2Gchil2559.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1602681..1602977 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2559.t1.intron1Gchil2559.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1602585..1602680 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2559.t1.start1Gchil2559.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1602975..1602977 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2559.t1 ID=Gchil2559.t1|Name=Gchil2559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=271bp
MSTGGKISSVKNPRVKEARAMLNRRYREKTGRILLEGRRLISDGLEQHLK
PIEFFYTKQALERSSENASLLSSMQNRGAKDYLVPDAVIRLFSDTVNPQG
LVGIFEKPHPCLPDFPTMSLICEEVRDPGNLGSLLRCAAASGVQFVALTP
GCADVWSLKALRAGMGAQFRVRVRQGMSWVDIVDYMKKNEISIRVADGFA
KKNYSLVDWTIPSALIVGSEATGPSEAAFSAAHEKIAIPMSGEVESLNVA
MAGAAILFEAKRQRDNKHSP*
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spliced messenger RNA

>Gchil2559.t1 ID=Gchil2559.t1|Name=Gchil2559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00004400_pilon:1602069..1602977- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACTGGAGGTAAAATATCCAGCGTGAAGAATCCACGCGTGAAGGA
AGCTCGGGCCATGCTGAATCGGCGTTATCGTGAGAAGACTGGGCGAATTC
TACTTGAAGGAAGACGTCTGATATCGGACGGCTTAGAACAACATTTGAAA
CCTATTGAATTCTTTTACACGAAACAGGCGCTAGAACGGAGTAGCGAGAA
CGCTTCGCTTTTGTCTTCAATGCAGAACAGGGGTGCGAAAGATTATTTGG
TTCCAGACGCCGTAATCCGTTTGTTTTCTGATACAGTCAATCCCCAAGGT
TTAGTTGGTATTTTCGAAAAGCCACATCCATGTCTACCGGATTTTCCAAC
CATGTCTTTAATATGCGAAGAAGTTCGTGACCCGGGAAATCTTGGCAGTT
TACTCAGATGCGCAGCAGCTTCAGGAGTTCAGTTCGTAGCCCTAACACCT
GGGTGTGCCGATGTGTGGAGCCTGAAAGCTCTGCGTGCCGGTATGGGTGC
TCAGTTTCGGGTTCGAGTTCGTCAGGGAATGTCATGGGTTGATATTGTTG
ACTACATGAAGAAAAACGAGATCAGTATTCGAGTAGCTGATGGATTTGCA
AAGAAAAACTACAGTCTCGTCGATTGGACCATTCCCAGTGCACTTATTGT
TGGCTCTGAAGCAACCGGTCCGAGTGAAGCAGCTTTTTCCGCAGCACATG
AGAAAATCGCGATACCGATGTCGGGGGAAGTTGAGAGCCTTAATGTAGCA
ATGGCGGGCGCAGCCATTCTTTTCGAAGCAAAGCGTCAACGTGATAACAA
ACATTCTCCGTAG
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protein sequence of Gchil2559.t1

>Gchil2559.t1 ID=Gchil2559.t1|Name=Gchil2559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MSTGGKISSVKNPRVKEARAMLNRRYREKTGRILLEGRRLISDGLEQHLK
PIEFFYTKQALERSSENASLLSSMQNRGAKDYLVPDAVIRLFSDTVNPQG
LVGIFEKPHPCLPDFPTMSLICEEVRDPGNLGSLLRCAAASGVQFVALTP
GCADVWSLKALRAGMGAQFRVRVRQGMSWVDIVDYMKKNEISIRVADGFA
KKNYSLVDWTIPSALIVGSEATGPSEAAFSAAHEKIAIPMSGEVESLNVA
MAGAAILFEAKRQRDNKHSP*
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mRNA from alignment at tig00004400_pilon:1602069..1602977-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2559.t1 ID=Gchil2559.t1|Name=Gchil2559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00004400_pilon:1602069..1602977- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACTGGAGGTAAAATATCCAGCGTGAAGAATCCACGCGTGAAGGA
AGCTCGGGCCATGCTGAATCGGCGTTATCGTGAGAAGACTGGGCGAATTC
TACTTGAAGGAAGACGTCTGATATCGGACGGCTTAGAACAACATTTGAAA
CCTATTGAATTCTTTTACACGAAACAGGCGCTAGAACGGAGTAGCGAGAA
CGCTTCGCTTTTGTCTTCAATGCAGAACAGGGGTGCGAAAGATTATTTGG
TTCCAGACGCCGTAATCCGTTTGTTTTCTGATACAGTCAATCCCCAAGTA
AGTTGTATTTGCTTCGTAACTCTGCAGACGATCACCTTAAAATGTGCCCG
TACTCCAGGCGGAGATCTAACCGATGAAGAGTATTCGTGCTAGGGTTTAG
TTGGTATTTTCGAAAAGCCACATCCATGTCTACCGGATTTTCCAACCATG
TCTTTAATATGCGAAGAAGTTCGTGACCCGGGAAATCTTGGCAGTTTACT
CAGATGCGCAGCAGCTTCAGGAGTTCAGTTCGTAGCCCTAACACCTGGGT
GTGCCGATGTGTGGAGCCTGAAAGCTCTGCGTGCCGGTATGGGTGCTCAG
TTTCGGGTTCGAGTTCGTCAGGGAATGTCATGGGTTGATATTGTTGACTA
CATGAAGAAAAACGAGATCAGTATTCGAGTAGCTGATGGATTTGCAAAGA
AAAACTACAGTCTCGTCGATTGGACCATTCCCAGTGCACTTATTGTTGGC
TCTGAAGCAACCGGTCCGAGTGAAGCAGCTTTTTCCGCAGCACATGAGAA
AATCGCGATACCGATGTCGGGGGAAGTTGAGAGCCTTAATGTAGCAATGG
CGGGCGCAGCCATTCTTTTCGAAGCAAAGCGTCAACGTGATAACAAACAT
TCTCCGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1602069..1602977-

>Gchil2559.t1 ID=Gchil2559.t1|Name=Gchil2559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00004400_pilon:1602069..1602977- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACTGGAGGTAAAATATCCAGCGTGAAGAATCCACGCGTGAAGGA
AGCTCGGGCCATGCTGAATCGGCGTTATCGTGAGAAGACTGGGCGAATTC
TACTTGAAGGAAGACGTCTGATATCGGACGGCTTAGAACAACATTTGAAA
CCTATTGAATTCTTTTACACGAAACAGGCGCTAGAACGGAGTAGCGAGAA
CGCTTCGCTTTTGTCTTCAATGCAGAACAGGGGTGCGAAAGATTATTTGG
TTCCAGACGCCGTAATCCGTTTGTTTTCTGATACAGTCAATCCCCAAGGT
TTAGTTGGTATTTTCGAAAAGCCACATCCATGTCTACCGGATTTTCCAAC
CATGTCTTTAATATGCGAAGAAGTTCGTGACCCGGGAAATCTTGGCAGTT
TACTCAGATGCGCAGCAGCTTCAGGAGTTCAGTTCGTAGCCCTAACACCT
GGGTGTGCCGATGTGTGGAGCCTGAAAGCTCTGCGTGCCGGTATGGGTGC
TCAGTTTCGGGTTCGAGTTCGTCAGGGAATGTCATGGGTTGATATTGTTG
ACTACATGAAGAAAAACGAGATCAGTATTCGAGTAGCTGATGGATTTGCA
AAGAAAAACTACAGTCTCGTCGATTGGACCATTCCCAGTGCACTTATTGT
TGGCTCTGAAGCAACCGGTCCGAGTGAAGCAGCTTTTTCCGCAGCACATG
AGAAAATCGCGATACCGATGTCGGGGGAAGTTGAGAGCCTTAATGTAGCA
ATGGCGGGCGCAGCCATTCTTTTCGAAGCAAAGCGTCAACGTGATAACAA
ACATTCTCCGTAG
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