Gchil2558.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2558.t1
Unique Name	Gchil2558.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1599335..1600246 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX47010
Preferred name	UROS
PFAMs	HEM4
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC01861
KEGG ko	ko:K01719
KEGG Reaction	R03165
KEGG Pathway	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG Module	M00121
GOs	GO:0003674,GO:0003824,GO:0004852,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	2.11e-56
EggNOG OGs	COG1587@1\|root,2QST9@2759\|Eukaryota
EC	4.2.1.75
Description	uroporphyrinogen III biosynthetic process
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2558	Gchil2558	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1599335..1600246 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2558.t1.stop1	Gchil2558.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1599335..1599337 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2558.t1.CDS1	Gchil2558.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1599335..1600246 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2558.t1.exon1	Gchil2558.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1599335..1600246 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2558.t1.start1	Gchil2558.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1600244..1600246 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2558.t1	Gchil2558.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1599335..1600246 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1599335..1600246-
coding sequence from alignment at tig00004400_pilon:1599335..1600246-

mRNA sequence

>Gchil2558.t1 ID=Gchil2558.t1|Name=Gchil2558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MAFILPAFFSRNRGSYATCARPRSRHRFSCVAPRDVDSDSLSNILDTYVR
VALTREARKNKALDDELRRLYPRIEIVHLPCVETVSGEDSEKLPAEIKKS
SCKWIVITSPEAAAVFIKAWRAADYPNLCQIAAVGKATGDCLRVVGIDVD
FEPSKATGKTLVKEFPLPKKTGECVLYPASLKASNVIVDGLTSLGYEVLR
LNTYSTEPVEFHELYKEIGRGTHIITFASPSAVASWVENVGVQEGVTVAC
IGETSAKAAHDAGFTDVHFPESPGLEGWVGVVCDAMRKYEGGIVKRGRIQ
ADE*

spliced messenger RNA

>Gchil2558.t1 ID=Gchil2558.t1|Name=Gchil2558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004400_pilon:1599335..1600246- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTTATCCTACCTGCCTTCTTCTCTCGAAATAGAGGTTCATATGC
TACATGCGCTCGTCCTCGGTCTCGGCATCGGTTTTCCTGTGTTGCTCCTA
GGGATGTTGATTCTGATTCATTGAGTAATATTCTGGATACCTACGTACGC
GTAGCTTTGACTCGTGAAGCACGAAAAAACAAAGCGTTAGATGATGAGTT
GCGAAGACTATATCCTCGGATAGAGATTGTTCATCTTCCATGTGTCGAAA
CCGTTTCAGGAGAAGATTCGGAAAAGCTACCGGCTGAAATCAAAAAGTCT
TCGTGCAAGTGGATCGTGATCACGTCTCCCGAAGCGGCAGCGGTCTTCAT
CAAAGCATGGAGAGCTGCAGACTATCCAAATCTTTGTCAGATTGCGGCCG
TGGGCAAGGCCACTGGGGACTGTCTCCGTGTTGTTGGCATTGACGTGGAC
TTTGAACCGTCAAAGGCAACAGGTAAAACCCTTGTGAAAGAATTTCCTTT
ACCAAAGAAAACTGGGGAGTGCGTCCTTTATCCGGCTAGCTTGAAAGCTT
CGAATGTCATCGTCGACGGGCTTACATCTTTGGGGTATGAGGTTCTTAGG
CTGAACACATATTCTACAGAACCCGTGGAGTTTCATGAATTGTACAAAGA
GATTGGGAGGGGCACTCATATTATAACCTTTGCGTCACCTAGCGCTGTTG
CGTCCTGGGTGGAGAACGTCGGTGTTCAAGAAGGCGTCACAGTAGCTTGC
ATTGGAGAAACATCTGCCAAAGCCGCTCATGACGCAGGGTTTACTGATGT
ACACTTTCCTGAATCCCCAGGACTAGAGGGTTGGGTGGGTGTAGTTTGTG
ATGCTATGAGGAAATACGAGGGAGGAATCGTGAAGAGGGGAAGAATTCAG
GCAGATGAATGA

protein sequence of Gchil2558.t1

>Gchil2558.t1 ID=Gchil2558.t1|Name=Gchil2558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MAFILPAFFSRNRGSYATCARPRSRHRFSCVAPRDVDSDSLSNILDTYVR
VALTREARKNKALDDELRRLYPRIEIVHLPCVETVSGEDSEKLPAEIKKS
SCKWIVITSPEAAAVFIKAWRAADYPNLCQIAAVGKATGDCLRVVGIDVD
FEPSKATGKTLVKEFPLPKKTGECVLYPASLKASNVIVDGLTSLGYEVLR
LNTYSTEPVEFHELYKEIGRGTHIITFASPSAVASWVENVGVQEGVTVAC
IGETSAKAAHDAGFTDVHFPESPGLEGWVGVVCDAMRKYEGGIVKRGRIQ
ADE*

mRNA from alignment at tig00004400_pilon:1599335..1600246-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2558.t1 ID=Gchil2558.t1|Name=Gchil2558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004400_pilon:1599335..1600246- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTTATCCTACCTGCCTTCTTCTCTCGAAATAGAGGTTCATATGC
TACATGCGCTCGTCCTCGGTCTCGGCATCGGTTTTCCTGTGTTGCTCCTA
GGGATGTTGATTCTGATTCATTGAGTAATATTCTGGATACCTACGTACGC
GTAGCTTTGACTCGTGAAGCACGAAAAAACAAAGCGTTAGATGATGAGTT
GCGAAGACTATATCCTCGGATAGAGATTGTTCATCTTCCATGTGTCGAAA
CCGTTTCAGGAGAAGATTCGGAAAAGCTACCGGCTGAAATCAAAAAGTCT
TCGTGCAAGTGGATCGTGATCACGTCTCCCGAAGCGGCAGCGGTCTTCAT
CAAAGCATGGAGAGCTGCAGACTATCCAAATCTTTGTCAGATTGCGGCCG
TGGGCAAGGCCACTGGGGACTGTCTCCGTGTTGTTGGCATTGACGTGGAC
TTTGAACCGTCAAAGGCAACAGGTAAAACCCTTGTGAAAGAATTTCCTTT
ACCAAAGAAAACTGGGGAGTGCGTCCTTTATCCGGCTAGCTTGAAAGCTT
CGAATGTCATCGTCGACGGGCTTACATCTTTGGGGTATGAGGTTCTTAGG
CTGAACACATATTCTACAGAACCCGTGGAGTTTCATGAATTGTACAAAGA
GATTGGGAGGGGCACTCATATTATAACCTTTGCGTCACCTAGCGCTGTTG
CGTCCTGGGTGGAGAACGTCGGTGTTCAAGAAGGCGTCACAGTAGCTTGC
ATTGGAGAAACATCTGCCAAAGCCGCTCATGACGCAGGGTTTACTGATGT
ACACTTTCCTGAATCCCCAGGACTAGAGGGTTGGGTGGGTGTAGTTTGTG
ATGCTATGAGGAAATACGAGGGAGGAATCGTGAAGAGGGGAAGAATTCAG
GCAGATGAATGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1599335..1600246-

>Gchil2558.t1 ID=Gchil2558.t1|Name=Gchil2558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00004400_pilon:1599335..1600246- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTTATCCTACCTGCCTTCTTCTCTCGAAATAGAGGTTCATATGC
TACATGCGCTCGTCCTCGGTCTCGGCATCGGTTTTCCTGTGTTGCTCCTA
GGGATGTTGATTCTGATTCATTGAGTAATATTCTGGATACCTACGTACGC
GTAGCTTTGACTCGTGAAGCACGAAAAAACAAAGCGTTAGATGATGAGTT
GCGAAGACTATATCCTCGGATAGAGATTGTTCATCTTCCATGTGTCGAAA
CCGTTTCAGGAGAAGATTCGGAAAAGCTACCGGCTGAAATCAAAAAGTCT
TCGTGCAAGTGGATCGTGATCACGTCTCCCGAAGCGGCAGCGGTCTTCAT
CAAAGCATGGAGAGCTGCAGACTATCCAAATCTTTGTCAGATTGCGGCCG
TGGGCAAGGCCACTGGGGACTGTCTCCGTGTTGTTGGCATTGACGTGGAC
TTTGAACCGTCAAAGGCAACAGGTAAAACCCTTGTGAAAGAATTTCCTTT
ACCAAAGAAAACTGGGGAGTGCGTCCTTTATCCGGCTAGCTTGAAAGCTT
CGAATGTCATCGTCGACGGGCTTACATCTTTGGGGTATGAGGTTCTTAGG
CTGAACACATATTCTACAGAACCCGTGGAGTTTCATGAATTGTACAAAGA
GATTGGGAGGGGCACTCATATTATAACCTTTGCGTCACCTAGCGCTGTTG
CGTCCTGGGTGGAGAACGTCGGTGTTCAAGAAGGCGTCACAGTAGCTTGC
ATTGGAGAAACATCTGCCAAAGCCGCTCATGACGCAGGGTTTACTGATGT
ACACTTTCCTGAATCCCCAGGACTAGAGGGTTGGGTGGGTGTAGTTTGTG
ATGCTATGAGGAAATACGAGGGAGGAATCGTGAAGAGGGGAAGAATTCAG
GCAGATGAATGA